genome.fa.s26.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  117  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37945018--37945057	20	2.0	20	85	9	55	37	12	7	42	1.71
37945566--37945633	23	3.2	20	71	20	50	51	7	0	41	1.30
37951389--37951430	21	2.0	21	95	0	75	38	11	14	35	1.83
37953590--37953664	27	2.8	27	84	8	98	17	20	37	25	1.94
37953681--37953721	19	2.2	19	90	0	64	29	0	19	51	1.47
37953932--37953983	19	2.8	19	94	5	90	38	0	11	50	1.39
37953681--37954188	260	1.9	262	96	0	948	45	9	5	39	1.59
37954147--37954203	27	2.1	27	90	0	87	49	14	1	35	1.53
37954244--37954330	22	3.7	22	82	14	120	32	1	13	52	1.48
37954239--37954338	49	2.0	49	94	0	173	33	1	13	53	1.46
37954320--37954391	8	8.4	8	71	14	54	36	1	15	47	1.54
37954546--37954612	27	2.5	27	90	0	98	17	31	17	32	1.94
37962259--37962397	40	3.5	40	76	11	144	31	24	15	28	1.96
37963533--37963565	16	2.1	16	94	0	57	0	27	0	72	0.85
37978422--37978517	29	3.2	29	72	18	106	46	4	2	46	1.33
37978415--37978527	61	1.9	59	96	3	208	47	4	1	46	1.33
37979494--37979519	4	6.5	4	100	0	52	26	0	0	73	0.84
37986717--37986769	16	3.2	16	78	5	52	39	7	0	52	1.30
37987122--37987152	15	2.1	15	100	0	62	45	0	0	54	0.99
37990244--37990468	90	2.5	89	90	2	337	39	21	16	22	1.92
37992705--37992763	22	2.7	22	70	0	55	18	8	8	64	1.46
37992796--37992855	30	2.0	30	96	0	111	25	3	15	56	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37992977--37993002	11	2.4	11	100	0	52	73	0	0	26	0.84
37993268--37993301	14	2.5	14	85	4	52	64	0	0	35	0.94
37994903--37994963	30	2.0	31	81	9	72	44	0	3	52	1.17
38000622--38000657	16	2.2	16	90	0	54	38	2	8	50	1.47
38001955--38001982	9	3.1	9	100	0	56	78	0	0	21	0.75
38006107--38006132	8	3.2	8	100	0	52	61	0	0	38	0.96
38006394--38006436	16	2.6	16	85	10	52	46	2	0	51	1.13
38006392--38006438	15	3.1	15	82	14	53	51	2	0	46	1.13
38010317--38010367	13	3.9	13	89	0	75	25	11	23	39	1.89
38010951--38010994	22	2.0	21	91	4	70	40	4	13	40	1.65
38017743--38017794	20	2.6	20	78	0	59	34	15	11	38	1.83
38025370--38025415	20	2.3	20	81	7	58	36	17	8	36	1.81
38030187--38030225	12	3.2	13	85	14	64	64	0	0	35	0.94
38038941--38039403	229	2.0	229	99	0	908	30	12	22	34	1.91
38052631--38052828	41	4.8	41	89	0	297	30	29	21	18	1.97
38052976--38053242	47	5.6	47	77	6	284	38	14	5	40	1.71
38052933--38053256	96	3.4	96	92	2	515	39	14	5	40	1.69
38063942--38064065	46	2.8	46	91	3	200	27	22	16	33	1.96
38063942--38064176	37	5.8	45	87	8	207	26	21	15	36	1.93
38064027--38064203	37	4.8	37	95	0	300	26	20	13	38	1.90
38071637--38071760	46	2.8	46	91	3	200	27	22	16	33	1.96
38071637--38071871	37	5.8	45	87	8	207	26	21	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38071722--38071898	37	4.8	37	95	0	300	26	20	13	38	1.90
38077557--38077593	17	2.2	17	90	0	56	35	10	5	48	1.61
38083796--38084014	84	2.6	83	83	7	278	36	18	9	35	1.83
38084390--38084485	9	9.9	10	75	13	78	36	1	1	61	1.10
38084390--38084452	19	3.4	19	79	14	69	34	1	1	61	1.15
38084403--38084494	10	9.5	10	70	11	50	34	0	2	63	1.07
38084403--38084509	19	5.7	18	72	13	74	31	0	1	65	1.10
38084390--38084500	48	2.3	47	81	7	118	33	0	1	63	1.11
38084402--38084509	29	3.8	28	78	8	103	32	0	1	64	1.10
38084440--38084496	10	5.9	10	77	6	55	31	0	1	66	1.02
38086234--38086465	93	2.5	93	81	7	244	32	10	18	38	1.85
38086989--38087095	39	2.8	38	83	8	119	46	19	5	28	1.72
38086982--38087108	19	6.6	19	74	7	87	44	19	7	27	1.78
38087126--38087151	13	2.0	13	100	0	52	53	23	0	23	1.46
38087007--38087167	19	8.7	19	70	12	102	47	22	3	26	1.67
38094151--38094235	33	2.5	33	79	12	91	51	9	11	27	1.69
38094286--38094498	52	4.1	52	75	10	150	43	12	13	30	1.81
38094302--38094503	35	5.7	35	72	10	144	43	12	13	30	1.81
38094319--38094490	90	1.9	89	84	5	231	43	13	13	29	1.83
38094135--38094503	18	21.4	18	70	15	194	45	11	12	30	1.77
38094543--38094604	17	3.6	16	79	12	70	38	12	14	33	1.84
38094135--38094604	18	27.3	17	66	19	153	44	11	13	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38094916--38094973	10	6.0	9	77	15	62	1	18	0	79	0.82
38094915--38094973	20	3.1	18	80	19	75	1	20	0	77	0.85
38094994--38095043	24	2.2	23	89	7	75	6	30	42	22	1.77
38095135--38095348	104	2.1	103	97	0	401	7	16	34	42	1.75
38095337--38095417	6	13.0	6	77	14	67	0	22	0	77	0.76
38095337--38095420	15	6.1	14	78	10	77	0	22	0	77	0.77
38095343--38095420	27	2.9	27	80	12	81	0	23	0	76	0.78
38095950--38096108	29	5.4	29	77	8	133	39	4	24	31	1.75
38095950--38096108	59	2.7	58	76	9	162	39	4	24	31	1.75
38095950--38096086	29	4.7	29	77	13	136	39	2	24	32	1.70
38096462--38098127	163	10.5	164	90	5	2071	35	20	16	27	1.94
38096467--38098127	76	21.0	77	83	8	1743	35	20	16	27	1.94
38099013--38099046	17	1.9	18	88	5	52	0	8	8	82	0.85
38104349--38104777	35	12.5	35	70	11	225	46	10	12	30	1.76
38104349--38104534	69	2.7	71	84	5	231	45	11	12	30	1.77
38104348--38104777	18	25.0	18	70	14	232	46	10	12	30	1.76
38104840--38104898	17	3.4	16	75	13	55	40	11	11	35	1.79
38104842--38104902	18	3.5	17	74	14	61	39	11	13	36	1.80
38105259--38105317	10	6.0	10	79	16	61	1	16	0	81	0.78
38105419--38105475	13	4.2	13	76	8	60	0	26	8	64	1.22
38105423--38105474	25	2.2	23	86	6	68	0	25	5	69	1.10
38105588--38105644	14	4.3	14	74	19	50	0	24	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38105592--38105650	6	9.3	6	80	10	64	0	25	0	74	0.82
38106205--38106317	29	3.9	29	77	13	106	39	2	26	30	1.70
38114937--38115078	71	2.0	71	98	0	275	36	13	14	35	1.86
38121198--38121240	19	2.2	19	84	16	52	53	0	4	41	1.21
38124119--38124161	22	2.0	22	90	0	68	37	18	27	16	1.92
38126879--38126934	27	2.1	27	86	0	76	42	14	17	25	1.87
38135762--38135822	31	2.0	31	93	0	104	16	27	22	32	1.96
38144687--38144862	58	3.2	56	79	12	211	28	22	14	34	1.94
38144642--38144862	51	4.2	51	84	6	277	28	22	14	33	1.94
38144788--38144825	14	2.7	14	87	0	58	23	28	7	39	1.83
38150414--38150722	44	6.6	44	77	16	300	31	15	23	29	1.95
38150421--38150724	51	6.3	51	85	8	404	31	14	24	29	1.95
38151141--38151229	30	3.0	30	82	9	110	33	22	3	40	1.71
38151144--38151301	29	5.4	30	72	13	114	32	23	5	39	1.76
38151622--38151688	35	1.9	35	87	6	100	76	10	13	0	1.03
38151802--38151866	4	15.8	4	76	17	62	73	1	23	1	1.00
38151802--38151880	31	2.6	30	82	9	88	73	1	24	1	0.98
38151803--38151866	23	2.9	22	86	11	78	75	1	21	1	0.98
38151807--38151866	19	3.0	19	79	13	66	75	1	21	1	0.99
38152630--38152672	21	2.1	20	91	4	68	37	13	9	39	1.78
38152669--38152833	75	2.2	74	84	5	208	31	12	9	46	1.73
38152630--38152833	37	5.5	37	76	13	179	31	12	9	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38152866--38152978	20	6.3	17	68	17	59	36	7	11	44	1.70
38152843--38152921	37	2.1	37	85	2	104	40	6	10	43	1.64
38152856--38152939	37	2.2	38	85	4	107	40	9	10	39	1.73
38152853--38152976	55	2.2	57	84	8	155	37	8	11	42	1.72
38152907--38153011	36	2.9	35	84	13	133	36	9	10	43	1.72
38158377--38158444	1	68.0	1	76	0	64	88	8	2	0	0.62
38158377--38158432	10	5.4	10	85	14	78	89	10	0	0	0.49
38158377--38158444	17	4.1	16	83	10	84	88	8	2	0	0.62
38158377--38158444	24	2.8	23	84	8	82	88	8	2	0	0.62
38158377--38158432	18	3.3	18	87	7	75	89	10	0	0	0.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313