genome.fa.s26.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  141  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45371703--45371747	17	2.6	17	85	0	63	48	17	8	24	1.75
45371869--45371929	30	2.0	30	100	0	122	34	9	19	36	1.85
45374627--45374667	4	10.5	4	80	15	50	73	2	0	24	0.96
45374627--45374667	18	2.3	18	87	4	57	73	2	0	24	0.96
45380952--45380995	24	2.0	22	82	13	54	61	13	2	22	1.43
45381175--45381232	22	2.6	22	81	7	64	43	17	1	37	1.59
45381188--45381258	21	3.4	20	80	11	72	40	15	5	38	1.71
45381245--45381270	12	2.2	12	100	0	52	42	15	7	34	1.75
45381384--45381413	14	2.2	13	94	5	51	13	0	10	76	1.01
45383974--45384002	12	2.3	13	94	5	51	34	10	0	55	1.34
45389000--45389099	39	2.5	39	88	7	157	42	24	16	18	1.89
45389061--45389332	75	3.6	75	81	2	303	40	19	19	21	1.92
45394130--45394170	20	2.0	20	85	9	55	34	2	2	60	1.23
45396920--45397008	42	2.1	42	95	2	162	42	2	7	47	1.45
45398194--45398226	18	1.9	17	88	11	50	72	0	0	27	0.85
45409647--45409682	3	12.0	3	100	0	72	33	0	0	66	0.92
45416296--45416330	17	2.1	17	94	0	61	31	20	42	5	1.75
45418246--45418289	23	1.9	23	85	0	61	40	6	13	38	1.71
45420019--45420043	12	2.1	12	100	0	50	16	8	24	52	1.70
45424394--45424515	52	2.3	54	82	10	153	41	2	3	52	1.31
45428650--45428687	3	12.7	3	100	0	76	0	31	0	68	0.90
45443995--45444046	24	2.2	24	92	0	86	51	9	1	36	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45447908--45447959	24	2.2	24	89	0	77	51	11	1	34	1.49
45464818--45465018	95	2.1	95	97	0	375	40	8	16	34	1.79
45504143--45504492	124	2.8	125	94	1	605	32	22	16	28	1.96
45520337--45520381	24	1.9	23	81	4	54	44	4	0	51	1.21
45526574--45526607	17	2.0	17	88	0	50	32	0	8	58	1.29
45534919--45534963	22	2.2	19	84	11	54	42	0	4	53	1.21
45535919--45535958	3	13.3	3	100	0	80	65	0	0	35	0.93
45536453--45536571	30	3.8	30	74	16	105	29	25	15	29	1.96
45538627--45538890	130	2.0	130	96	0	483	34	17	15	32	1.91
45539412--45539467	21	2.7	21	91	0	94	25	8	37	28	1.86
45543397--45543468	32	2.3	32	95	2	128	37	22	0	40	1.54
45544377--45544414	20	1.9	20	84	10	51	57	15	10	15	1.64
45548082--45548174	17	5.4	17	88	2	114	39	2	9	48	1.48
45548062--45548200	9	15.4	9	75	8	122	38	1	12	47	1.50
45548053--45548184	53	2.5	54	83	4	171	39	1	11	47	1.49
45548053--45548200	35	4.1	36	79	6	140	39	1	12	47	1.49
45548188--45548212	12	2.1	12	100	0	50	32	0	16	52	1.44
45548053--45548226	9	19.2	9	73	12	97	36	1	14	47	1.52
45548270--45548309	19	2.1	19	86	9	55	47	2	5	45	1.38
45548281--45548354	25	3.3	21	74	17	62	52	1	9	36	1.42
45549791--45549900	19	6.9	16	71	22	88	36	18	14	30	1.91
45549815--45549894	14	5.4	14	69	19	63	35	18	13	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45550363--45550645	148	1.9	148	84	1	379	36	22	17	24	1.95
45551110--45551166	15	3.7	15	74	4	51	40	36	3	19	1.69
45551985--45552854	115	7.8	114	75	8	685	27	23	18	29	1.98
45551985--45552851	229	3.9	223	76	8	747	28	23	18	29	1.98
45558519--45558563	20	2.3	20	96	3	83	62	0	0	37	0.96
45574863--45574911	13	3.8	13	80	0	62	32	8	24	34	1.85
45575170--45575211	14	3.1	14	82	3	50	52	0	2	45	1.13
45575400--45575439	16	2.5	16	95	0	71	50	2	5	42	1.37
45600020--45600805	399	2.0	400	95	0	1405	33	21	16	28	1.95
45609260--45609288	12	2.4	12	100	0	58	58	0	6	34	1.25
45611236--45611577	132	2.6	132	91	0	542	24	24	20	30	1.98
45611307--45611489	44	4.2	43	70	9	109	25	25	18	30	1.98
45613804--45613861	5	11.0	5	82	14	64	0	22	0	77	0.77
45613805--45613863	6	9.8	6	75	12	50	0	22	0	77	0.76
45613802--45613863	11	5.7	11	79	11	74	0	24	0	75	0.80
45613805--45613886	37	2.3	35	83	8	101	3	19	1	75	1.02
45614899--45615001	51	2.0	52	92	3	172	57	0	1	40	1.10
45614967--45615042	31	2.4	31	93	2	134	60	0	2	36	1.11
45614941--45615077	71	1.9	71	94	2	240	59	0	2	37	1.13
45614899--45615072	82	2.1	82	82	14	209	58	0	2	39	1.13
45614899--45615032	11	12.9	11	72	17	108	56	0	2	41	1.11
45614899--45615082	40	4.5	40	78	16	157	58	0	2	38	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45616429--45616475	19	2.5	20	86	6	62	44	8	19	27	1.79
45618510--45618538	12	2.4	12	100	0	58	58	0	6	34	1.25
45624820--45624858	16	2.3	18	83	16	57	20	2	2	74	1.06
45625731--45625804	31	2.4	31	84	4	87	41	8	12	37	1.72
45633006--45633089	18	4.4	19	75	11	82	61	1	1	35	1.11
45633016--45633105	10	9.4	10	69	9	62	62	3	1	33	1.19
45632998--45633096	20	5.2	18	77	15	74	61	2	1	35	1.14
45633006--45633105	19	5.3	19	78	9	80	63	3	1	33	1.17
45633328--45633375	23	2.1	23	84	7	62	37	2	0	60	1.09
45635351--45635462	51	2.2	51	96	0	206	28	29	0	41	1.56
45635463--45635527	31	2.2	31	94	5	116	36	0	0	63	0.95
45636553--45636577	7	3.6	7	100	0	50	28	0	12	60	1.32
45637623--45637732	29	3.8	29	100	0	220	45	26	0	28	1.54
45637739--45637963	116	1.9	116	88	1	335	39	11	9	40	1.74
45639942--45639966	13	1.9	13	100	0	50	48	8	24	20	1.76
45640161--45640191	14	2.3	14	94	5	55	67	0	32	0	0.91
45640140--45640195	14	3.9	14	76	21	53	69	0	30	0	0.89
45640149--45640195	17	2.8	17	81	12	60	65	0	34	0	0.93
45640355--45640686	22	15.0	21	74	17	239	31	1	12	54	1.46
45640379--45640435	19	2.9	19	86	2	78	33	0	14	52	1.41
45640480--45640540	19	3.1	19	82	13	86	32	0	13	54	1.39
45640355--45640637	49	6.5	40	70	23	189	31	1	12	54	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45640521--45640686	27	6.7	27	76	18	157	30	2	13	53	1.52
45640489--45640686	49	4.1	49	88	1	299	32	2	12	53	1.50
45640493--45640685	97	2.0	98	96	1	361	31	2	12	53	1.51
45643351--45643484	29	4.8	29	90	9	224	46	24	0	29	1.53
45643351--45643484	53	2.4	55	93	6	227	46	24	0	29	1.53
45646854--45646895	16	2.7	15	85	7	57	38	2	2	57	1.25
45649824--45649864	22	1.9	21	90	5	64	0	36	2	60	1.10
45649924--45650026	27	3.8	27	89	2	145	23	35	20	20	1.96
45650543--45650894	125	2.8	125	97	0	659	32	20	16	29	1.95
45652728--45652786	31	1.9	31	89	3	93	47	10	11	30	1.73
45662058--45663653	800	2.0	800	99	0	3165	32	17	19	30	1.95
45667738--45667765	3	9.3	3	100	0	56	67	0	0	32	0.91
45667883--45667924	23	1.9	22	85	9	59	59	4	4	30	1.39
45672000--45672027	13	2.2	13	100	0	56	39	0	21	39	1.54
45678121--45678256	41	3.1	41	70	19	119	26	19	19	34	1.96
45678150--45678873	51	15.6	50	65	17	208	28	19	17	34	1.95
45678088--45678311	92	2.4	92	89	1	333	28	18	16	36	1.93
45678372--45678918	45	12.0	45	72	12	348	28	19	17	34	1.95
45678472--45678769	41	6.8	41	71	14	175	27	20	18	33	1.96
45678372--45678910	181	3.0	181	89	0	799	28	20	17	33	1.95
45678665--45678915	137	1.8	138	83	5	337	29	19	19	31	1.96
45682599--45682641	21	2.0	21	82	8	52	23	20	4	51	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45691718--45691751	17	2.1	16	88	5	50	2	14	5	76	1.09
45691740--45691790	14	3.6	14	76	7	50	17	13	0	68	1.21
45691940--45691976	14	2.4	17	86	13	53	51	0	0	48	1.00
45693050--45693093	22	2.0	22	100	0	88	18	13	13	54	1.71
45702043--45702069	11	2.5	11	100	0	54	55	0	0	44	0.99
45707397--45707472	26	3.0	25	83	12	84	30	0	7	61	1.24
45707426--45707477	26	2.0	26	100	0	104	26	0	11	61	1.30
45707583--45707633	23	2.3	22	86	10	68	49	0	7	43	1.32
45707886--45707959	29	2.5	29	77	4	76	27	13	14	44	1.83
45708811--45708848	19	2.1	19	90	5	60	7	7	5	78	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313