Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  103  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33985964--33986004
20
2.0
20
95
0
73
48
2
4
43
1.37
34001162--34001507
172
2.0
172
96
0
638
18
28
9
42
1.82
34001776--34001811
18
2.1
17
94
5
63
25
11
0
63
1.27
34009572--34009609
7
5.4
7
87
0
58
21
0
36
42
1.53
34011129--34011167
20
2.1
19
85
9
53
2
28
17
51
1.59
34014922--34014960
20
2.1
19
85
9
53
2
28
17
51
1.59
34022119--34022178
8
7.5
8
73
14
52
58
1
0
40
1.08
34022141--34022171
15
2.1
15
93
0
53
61
0
0
38
0.96
34022222--34022280
20
3.1
19
83
9
75
28
5
0
66
1.13
34022228--34022288
20
3.0
20
73
17
56
31
3
0
65
1.09
34022445--34022494
21
2.4
21
76
6
57
40
28
12
20
1.87
34022624--34022675
26
2.0
26
85
7
70
50
1
1
46
1.23
34024168--34024200
17
1.9
17
93
0
57
6
18
12
63
1.48
34024724--34024799
28
2.9
26
84
5
82
43
9
17
30
1.80
34028556--34028613
18
3.2
18
68
18
57
63
3
6
25
1.35
34028551--34028630
37
2.2
37
97
2
153
65
2
7
25
1.32
34029524--34029548
13
1.9
13
100
0
50
52
16
16
16
1.76
34031542--34031700
44
3.7
43
74
12
148
23
15
27
33
1.94
34031542--34031700
43
3.7
43
77
9
164
23
15
27
33
1.94
34034053--34034120
34
2.0
34
82
5
84
36
2
7
52
1.44
34035746--34035783
20
1.9
20
94
0
67
31
0
10
57
1.32
34038359--34038545
93
2.0
93
98
0
365
18
18
7
55
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34038876--34038910
17
2.1
17
88
0
52
28
31
25
14
1.95
34039089--34039129
21
2.0
21
90
9
66
21
36
21
19
1.95
34040256--34040313
30
1.9
30
85
0
80
17
32
32
17
1.93
34042115--34042180
6
11.6
5
79
20
60
75
4
3
16
1.09
34042115--34042180
18
3.8
16
79
15
69
75
4
3
16
1.09
34042114--34042180
24
2.9
22
82
12
89
76
4
2
16
1.08
34046957--34047000
6
7.3
6
80
10
54
79
0
6
13
0.92
34048814--34048851
18
2.1
19
95
5
69
76
0
7
15
1.01
34048805--34048857
18
3.1
17
84
10
63
71
0
11
16
1.13
34053635--34053692
30
1.9
30
85
0
80
17
27
32
22
1.96
34066958--34067008
19
2.7
18
77
17
59
74
5
1
17
1.11
34066958--34067009
18
2.8
19
82
8
63
73
5
1
19
1.14
34075017--34075055
15
2.4
17
83
16
55
33
0
0
66
0.92
34075018--34075050
16
2.1
16
94
5
59
33
0
0
66
0.92
34075024--34075117
20
4.6
20
68
19
59
35
2
2
60
1.20
34075104--34075240
5
29.0
5
68
17
62
35
2
0
61
1.16
34075069--34075181
52
2.2
52
81
13
126
32
2
1
62
1.19
34075068--34075223
10
14.8
10
65
23
63
32
2
1
62
1.19
34075369--34075410
18
2.4
17
88
8
57
35
0
2
61
1.09
34075439--34075489
22
2.3
23
80
12
61
33
3
13
49
1.61
34086850--34086888
17
2.2
18
90
4
62
17
46
23
12
1.83
34088061--34088136
38
2.0
38
92
0
125
50
15
11
22
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34090497--34090540
20
2.3
19
84
4
52
43
6
6
43
1.57
34093032--34093140
41
2.7
41
82
2
132
36
21
16
25
1.94
34093054--34093164
41
2.8
40
83
5
138
36
22
18
23
1.95
34093316--34093421
50
2.1
51
92
3
187
41
18
1
37
1.62
34093336--34093421
24
3.5
24
66
17
68
40
20
1
37
1.61
34094092--34094133
21
2.0
22
90
4
68
0
30
0
69
0.89
34094097--34094144
21
2.3
20
82
13
53
2
25
2
70
1.09
34101464--34101600
55
2.5
55
78
4
159
27
29
29
13
1.94
34107231--34107266
18
2.0
18
89
10
56
55
13
0
30
1.39
34108693--34108722
15
2.0
15
93
0
51
63
23
0
13
1.29
34109936--34109971
2
18.0
2
100
0
72
50
0
50
0
1.00
34111009--34111125
60
2.0
59
83
5
146
41
5
4
49
1.44
34112662--34112751
45
2.0
45
83
12
114
1
21
3
74
1.03
34112661--34112745
20
4.3
19
76
16
68
1
21
2
75
0.99
34127869--34128003
50
2.7
50
86
3
191
20
27
21
30
1.98
34135466--34135606
50
3.0
49
82
9
184
26
27
20
25
1.99
34138920--34138945
10
2.6
10
100
0
52
19
0
7
73
1.07
34139474--34139545
35
2.1
35
100
0
144
33
11
30
25
1.90
34142202--34142256
22
2.5
22
91
8
85
45
0
7
47
1.30
34143556--34143622
18
3.6
18
75
11
62
40
5
14
38
1.71
34143554--34143694
39
3.6
39
87
0
201
36
9
14
39
1.79
34143546--34143692
78
1.9
78
88
0
222
38
8
14
38
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34150816--34150853
19
2.0
19
85
10
51
68
0
10
21
1.19
34156586--34156651
34
2.0
33
82
8
80
25
25
24
24
2.00
34157100--34157133
17
1.9
17
88
5
50
14
44
29
11
1.81
34161151--34161185
17
2.0
18
88
5
54
65
0
0
34
0.93
34162404--34162447
3
13.7
3
90
9
61
68
0
2
29
1.02
34162397--34162447
15
3.2
15
81
18
59
66
0
1
31
1.03
34162422--34162460
18
2.2
18
85
0
51
66
0
10
23
1.22
34172309--34172333
9
2.8
9
100
0
50
12
60
16
12
1.60
34175981--34176036
28
2.0
28
82
6
69
32
5
1
60
1.29
34176087--34176151
14
4.6
14
74
11
53
33
3
0
63
1.10
34176471--34176511
21
2.0
21
90
0
64
21
2
2
73
1.07
34177643--34177682
21
1.9
21
84
0
53
27
25
7
40
1.82
34194717--34194796
39
2.1
39
92
0
133
51
21
10
17
1.74
34201026--34201211
61
3.0
61
99
0
363
48
3
8
39
1.51
34217734--34217831
29
3.3
29
64
18
76
51
18
20
10
1.75
34217708--34217839
59
2.3
59
88
6
214
50
15
23
9
1.74
34217920--34217969
10
5.0
10
86
13
68
20
8
2
70
1.23
34218686--34218720
18
2.0
18
88
5
54
25
17
2
54
1.57
34223396--34223435
16
2.6
16
88
7
57
60
0
0
40
0.97
34223413--34223470
25
2.5
21
81
18
55
58
0
1
39
1.08
34232512--34232928
217
1.9
218
91
0
674
29
11
19
39
1.87
34234126--34234194
33
2.1
33
100
0
138
27
10
20
42
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34234474--34234524
26
2.0
26
84
7
68
29
3
3
62
1.31
34234361--34234736
186
2.0
190
84
6
498
43
9
11
35
1.72
34235343--34235385
20
2.2
20
82
0
50
44
4
9
41
1.57
34243591--34243645
21
2.6
21
82
0
65
25
40
23
10
1.87
34243975--34244017
19
2.3
19
91
0
68
37
18
16
27
1.92
34256702--34256747
17
2.6
18
86
6
58
50
0
2
47
1.13
34256848--34256891
16
3.0
16
71
25
51
40
0
0
59
0.98
34258637--34258891
62
4.1
63
81
2
273
27
24
27
20
1.99
34258659--34258918
125
2.1
125
83
5
321
27
24
27
20
1.99
34261365--34261401
16
2.3
16
100
0
74
16
21
18
43
1.88
34262605--34262629
13
1.9
13
100
0
50
48
0
4
48
1.20
34271235--34271432
63
3.2
62
80
2
236
29
27
25
18
1.98
34276868--34276924
30
1.9
30
85
0
78
28
22
7
42
1.80
34278897--34278944
16
2.8
18
76
20
57
35
0
0
64
0.94
34278843--34278929
33
3.0
28
71
19
79
33
4
0
62
1.16
34278843--34278944
16
6.6
16
71
14
56
34
3
0
61
1.14
34279175--34279225
15
3.3
15
71
15
50
29
0
7
62
1.23
34279169--34279229
31
1.9
32
87
9
90
32
0
6
60
1.22
34280049--34280284
118
2.0
118
98
0
454
27
17
19
34
1.95
34291351--34291565
44
4.9
44
74
12
181
31
16
24
27
1.96
34291246--34291666
132
3.2
132
93
0
682
30
17
25
27
1.97
34291258--34291653
88
4.5
86
72
12
252
30
17
25
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34291730--34292205
198
2.4
201
88
2
697
30
18
20
29
1.97
34293880--34293961
33
2.6
30
75
17
78
34
4
0
60
1.18
34293938--34293980
19
2.3
19
84
11
54
37
2
0
60
1.10
34293879--34293977
11
9.0
11
68
21
57
34
5
0
60
1.18
34293876--34293961
30
2.9
29
75
14
102
33
4
0
61
1.17
34294211--34294261
15
3.3
15
71
15
50
29
0
7
62
1.23
34294205--34294265
31
1.9
32
87
9
90
32
0
6
60
1.22
34297322--34297385
21
3.0
22
76
15
64
39
3
0
57
1.14
34304735--34304779
21
2.3
19
79
17
56
73
8
0
17
1.08
34304740--34304780
21
2.0
21
90
4
66
73
7
0
19
1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313