genome.fa.s26.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  173  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53775062--53775120	26	2.3	26	78	0	64	33	18	22	25	1.96
53779130--53779176	21	2.2	22	85	11	62	44	0	2	53	1.12
53782341--53782550	54	3.9	53	82	8	203	39	14	19	27	1.90
53782411--53782695	54	5.3	53	77	9	224	39	13	19	28	1.89
53782493--53782731	104	2.2	108	86	5	326	38	13	20	27	1.90
53782569--53782730	54	3.0	54	77	3	182	38	14	19	27	1.90
53784184--53784217	16	2.1	16	88	0	50	11	32	0	55	1.36
53784816--53784853	18	2.1	18	100	0	76	21	5	21	52	1.66
53786968--53787162	89	2.2	86	85	6	275	34	19	9	36	1.84
53788934--53789054	50	2.4	50	88	2	172	33	11	19	36	1.87
53792703--53792783	31	2.6	31	81	9	87	34	9	4	50	1.57
53792663--53792782	61	2.0	61	83	3	152	35	12	5	45	1.66
53797811--53797836	5	5.2	5	100	0	52	38	19	19	23	1.93
53797785--53797836	26	2.0	26	81	7	61	34	15	26	23	1.94
53798471--53798530	30	2.0	31	86	3	86	40	0	40	20	1.52
53798745--53798781	9	4.1	9	92	0	65	29	10	13	45	1.77
53799007--53799115	30	3.7	29	84	9	130	48	4	13	33	1.63
53803334--53803367	17	2.0	17	94	0	59	44	50	0	5	1.26
53804805--53804838	17	2.0	17	94	0	59	44	50	0	5	1.26
53809444--53809477	17	2.0	17	94	0	59	44	50	0	5	1.26
53809725--53809766	3	14.0	3	100	0	84	66	0	0	33	0.92
53814708--53815295	72	8.1	72	89	5	887	29	22	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53816867--53816916	17	2.7	20	78	18	70	10	0	44	46	1.37
53820151--53820200	17	2.7	20	78	18	70	10	0	44	46	1.37
53823862--53823924	28	2.2	28	77	8	65	61	1	12	23	1.39
53831646--53831866	87	2.5	87	81	4	205	36	17	9	35	1.83
53831989--53832047	28	2.2	26	82	11	66	69	6	0	23	1.12
53841327--53841362	18	1.9	19	88	5	56	13	8	2	75	1.15
53842353--53842390	20	1.9	20	89	10	60	36	5	7	50	1.54
53844326--53844371	19	2.4	19	85	7	58	21	21	10	45	1.82
53847495--53847544	6	8.5	6	74	12	50	80	2	14	4	0.95
53847494--53847527	11	3.0	11	91	4	50	85	2	8	2	0.80
53847493--53847544	18	2.9	18	83	11	63	78	1	15	3	0.98
53847493--53847544	17	2.9	19	77	13	56	78	1	15	3	0.98
53847507--53847544	17	2.2	17	90	4	58	78	0	15	5	0.91
53848829--53849389	50	11.3	50	68	4	238	30	22	21	25	1.99
53848810--53849454	99	6.5	99	87	2	794	29	22	22	25	1.99
53849260--53849416	50	3.1	50	71	7	156	28	20	26	24	1.99
53849514--53850122	40	14.7	40	75	9	452	31	23	20	24	1.98
53849554--53849917	87	4.3	85	74	12	286	32	23	19	24	1.97
53849513--53850083	167	3.4	168	85	5	700	32	23	20	23	1.98
53849514--53850122	82	7.4	82	80	6	599	31	23	20	24	1.98
53851860--53851905	20	2.3	20	81	7	58	28	4	4	63	1.33
53853878--53853942	19	3.3	19	80	6	76	36	1	0	61	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53853864--53853948	9	8.7	10	73	18	54	36	2	0	61	1.09
53854017--53854199	91	2.0	91	82	4	219	33	8	20	37	1.83
53854880--53854917	20	2.0	20	89	5	60	34	0	0	65	0.93
53855381--53855442	28	2.2	29	82	8	74	62	1	11	24	1.37
53857626--53857774	72	2.1	72	93	0	253	29	24	20	26	1.99
53866742--53866790	24	2.0	25	84	7	66	53	4	2	40	1.32
53870535--53870584	17	2.7	20	78	18	70	10	0	44	46	1.37
53870995--53871044	17	2.7	20	78	18	70	10	0	44	46	1.37
53875634--53875683	17	2.7	20	78	18	70	10	0	44	46	1.37
53876354--53876396	23	2.0	22	86	9	61	46	16	2	34	1.60
53879825--53879969	48	3.0	48	100	0	290	39	8	14	37	1.76
53880272--53880313	16	2.6	16	81	11	50	69	0	14	16	1.20
53880170--53880356	61	3.1	61	89	4	297	52	6	12	28	1.63
53906068--53906124	28	2.0	28	100	0	114	42	14	21	22	1.88
53909676--53909717	21	2.0	21	100	0	84	28	9	23	38	1.86
53911199--53911272	2	37.0	2	97	0	139	50	48	0	1	1.09
53914328--53914419	46	2.0	46	100	0	184	21	23	32	21	1.98
53918364--53919761	705	2.0	705	98	0	2679	33	16	20	30	1.94
53920193--53920233	20	2.0	20	100	0	82	34	9	9	46	1.70
53922406--53922518	53	2.1	53	90	0	172	23	18	13	44	1.85
53933555--53933716	87	1.9	87	82	2	209	25	24	20	29	1.99
53933567--53934047	44	11.1	44	70	8	170	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53933683--53934047	170	2.1	170	85	7	495	26	23	19	30	1.98
53933909--53934068	87	1.9	85	82	3	205	25	22	21	30	1.99
53942958--53943089	66	2.0	66	98	0	255	20	26	18	34	1.95
53944687--53944786	50	2.0	50	100	0	200	28	34	8	30	1.86
53945616--53945673	29	2.0	29	93	0	98	32	8	32	25	1.86
53948049--53948692	114	5.7	114	91	2	967	25	23	25	25	2.00
53948989--53949042	22	2.4	23	87	3	74	25	0	42	31	1.55
53949253--53949290	15	2.6	15	83	4	51	23	2	36	36	1.69
53949920--53950304	149	2.6	150	88	4	543	47	13	14	24	1.80
53950215--53950398	94	2.0	94	93	0	314	53	10	10	25	1.67
53950309--53950686	152	2.6	139	85	6	483	47	12	13	26	1.79
53949841--53950791	379	2.5	384	88	5	1355	47	12	13	26	1.77
53954451--53954610	80	2.0	80	97	0	302	29	13	21	35	1.91
53954754--53954810	27	2.2	26	81	9	62	26	8	1	63	1.34
53955191--53955234	22	2.0	22	90	0	70	45	25	20	9	1.80
53957175--53957208	7	4.9	7	96	0	59	29	32	0	38	1.58
53957213--53957265	7	7.6	7	78	16	56	28	9	0	62	1.26
53957218--53957269	21	2.4	21	87	3	68	32	7	0	59	1.26
53957299--53957328	15	2.0	15	93	0	51	20	10	0	70	1.16
53958697--53958743	24	2.0	23	84	12	60	31	12	4	51	1.59
53958982--53959025	22	1.9	24	90	9	74	25	20	0	54	1.45
53959625--53959692	13	5.7	11	74	19	57	55	0	1	42	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53959623--53959692	5	14.6	5	70	24	53	55	0	1	42	1.08
53959623--53959691	30	2.4	29	80	7	86	55	0	1	43	1.08
53959789--53959833	23	2.0	23	82	8	56	28	22	0	48	1.50
53966460--53966506	23	2.1	23	84	7	62	29	2	10	57	1.44
53969429--53969463	18	2.0	18	88	5	54	34	11	5	48	1.63
53980964--53981041	31	2.6	29	82	9	93	65	3	1	29	1.18
53980964--53981037	10	7.2	11	73	10	59	67	4	1	27	1.16
53980967--53981077	21	5.5	21	75	8	88	62	3	2	31	1.26
53981109--53981141	10	3.2	11	87	12	52	66	0	6	27	1.15
53981424--53981450	8	3.4	8	100	0	54	59	0	0	40	0.98
53981557--53981602	20	2.2	21	85	11	60	41	4	0	54	1.20
53982096--53982172	4	19.2	4	97	0	136	24	2	25	46	1.65
53985146--53985177	17	1.9	17	93	6	57	53	0	15	31	1.43
53991624--53991656	15	2.2	15	94	0	57	27	15	15	42	1.86
53991741--53991800	16	3.8	16	78	10	61	35	16	11	36	1.85
54001533--54001575	22	1.9	22	81	13	52	53	6	9	30	1.59
54004967--54004996	15	1.9	16	93	6	53	30	23	13	33	1.93
54011707--54011813	25	4.3	25	80	11	121	27	23	17	31	1.97
54012444--54012488	21	2.1	21	84	8	56	55	4	20	20	1.60
54016576--54016617	13	3.3	13	86	3	50	76	7	0	16	1.00
54020303--54020340	18	2.1	18	100	0	76	39	26	23	10	1.87
54028862--54028907	24	1.9	24	90	0	74	34	10	13	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54030320--54030364	21	2.1	21	84	8	56	42	6	4	46	1.50
54030439--54030464	11	2.4	11	100	0	52	7	7	0	84	0.77
54030953--54030991	18	2.1	19	85	4	53	41	0	0	58	0.98
54031330--54031369	9	4.4	9	87	0	62	42	20	10	27	1.83
54031389--54031437	6	7.7	6	84	8	62	20	4	16	59	1.53
54031478--54031521	18	2.4	18	88	0	61	13	0	43	43	1.44
54055998--54056043	11	4.2	11	82	0	56	63	6	8	21	1.46
54078432--54078479	19	2.6	20	78	15	59	70	0	2	27	0.98
54086731--54086832	37	2.8	37	80	5	100	35	9	23	31	1.87
54086760--54086897	71	1.9	71	82	0	168	34	10	23	31	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313