genome.fa.s26.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  154  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48788008--48788069	22	2.7	22	87	5	79	46	1	1	50	1.20
48788043--48788095	16	3.3	16	91	0	88	45	3	5	45	1.45
48788145--48788396	83	3.0	83	97	1	468	39	3	7	48	1.50
48788205--48788348	40	3.5	40	74	15	159	38	3	7	50	1.48
48788443--48788468	10	2.6	10	100	0	52	50	11	0	38	1.39
48790744--48791000	43	6.0	43	79	2	185	26	26	19	27	1.99
48790799--48791004	86	2.4	86	87	0	277	25	27	18	28	1.98
48791071--48791116	21	2.2	21	88	0	65	6	45	13	34	1.69
48793117--48793309	9	22.8	9	74	12	176	31	1	21	45	1.59
48793122--48793152	16	1.9	16	93	0	53	29	3	16	51	1.59
48793108--48793309	25	8.0	25	83	3	178	32	0	21	45	1.58
48793077--48793305	34	6.7	35	71	14	126	32	1	20	45	1.60
48793117--48793309	34	5.5	34	71	17	151	31	1	21	45	1.59
48793424--48793813	64	6.1	64	72	12	298	35	4	14	46	1.64
48793620--48793895	9	30.6	9	66	15	106	33	3	17	45	1.66
48793568--48793749	82	2.2	83	92	1	294	35	4	16	43	1.70
48793570--48793904	146	2.3	146	88	2	485	34	4	16	44	1.68
48793738--48793895	82	1.9	82	90	2	255	34	3	17	44	1.65
48793620--48793900	18	17.1	18	65	24	133	33	3	16	45	1.66
48795607--48795913	147	2.1	149	79	8	317	33	24	16	25	1.96
48798158--48798413	113	2.4	106	89	7	385	43	14	5	36	1.68
48800427--48800472	14	3.2	14	77	17	58	15	8	54	21	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48800595--48800638	22	2.0	22	86	8	63	54	4	0	40	1.21
48801950--48802051	30	3.4	30	94	0	177	16	29	34	19	1.94
48808335--48808416	27	3.0	27	76	13	71	62	2	1	34	1.16
48816120--48816207	39	2.2	39	87	2	122	10	2	21	65	1.33
48818121--48818248	61	2.1	60	86	4	177	33	16	17	32	1.93
48818939--48818976	3	12.7	3	100	0	76	34	0	0	65	0.93
48821740--48821777	20	2.0	20	89	5	60	52	7	0	39	1.31
48821753--48821802	26	1.9	26	87	0	73	46	4	0	50	1.20
48821767--48821808	20	2.2	19	87	8	59	54	0	0	45	0.99
48821776--48821818	20	2.2	20	91	0	68	55	2	0	41	1.12
48822346--48822394	25	2.0	25	83	0	62	26	22	14	36	1.92
48827785--48827823	18	2.0	20	85	9	55	56	5	0	38	1.22
48827796--48827856	31	2.0	31	86	0	86	55	0	0	44	0.99
48832140--48832190	24	2.2	24	77	22	56	33	0	5	60	1.21
48833512--48833575	13	4.9	13	75	7	58	37	4	18	39	1.72
48833718--48833781	33	2.0	30	82	8	74	48	3	4	43	1.39
48835348--48835380	15	2.2	15	89	10	50	42	0	0	57	0.98
48840843--48840894	18	3.1	17	81	10	70	50	13	9	26	1.72
48841751--48841827	41	1.9	40	89	7	120	23	16	31	28	1.96
48843949--48844211	134	2.0	131	94	2	463	34	19	18	28	1.95
48845633--48845696	33	1.9	33	93	0	110	21	12	31	34	1.91
48851051--48851114	23	2.8	23	73	13	60	37	10	4	46	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48851918--48852118	100	2.0	100	100	0	402	29	11	6	51	1.65
48854738--48854783	20	2.3	21	81	11	60	65	2	2	30	1.16
48855270--48855321	18	2.9	17	75	13	52	40	0	1	57	1.10
48855871--48855909	19	2.1	19	85	0	51	33	20	2	43	1.65
48856647--48856758	56	2.0	56	89	3	172	42	0	37	19	1.52
48856670--48856760	30	3.2	30	67	17	84	41	0	34	24	1.55
48856872--48856902	9	3.4	9	90	0	53	38	22	12	25	1.90
48864701--48864792	46	2.0	46	97	0	175	31	15	31	21	1.94
48869265--48869928	233	2.8	241	84	4	715	32	12	18	37	1.88
48880623--48880677	26	2.1	26	93	0	74	36	20	34	9	1.84
48882671--48882726	23	2.5	22	77	8	67	37	3	1	57	1.27
48886261--48886310	13	3.7	14	80	15	61	36	6	2	56	1.36
48888753--48888795	21	2.0	22	81	9	52	65	6	2	25	1.30
48890436--48890461	6	4.3	6	100	0	52	50	15	0	34	1.45
48890323--48890618	148	2.0	148	99	0	583	37	16	6	38	1.75
48890584--48890609	6	4.3	6	100	0	52	50	15	0	34	1.45
48901149--48901243	44	2.1	44	82	1	109	25	24	20	30	1.98
48901400--48901820	88	4.8	88	99	0	833	21	27	27	24	1.99
48902625--48902677	26	2.0	26	88	0	79	37	20	22	18	1.94
48902754--48902815	25	2.5	24	74	5	61	45	19	20	14	1.85
48905351--48905385	18	1.9	18	88	0	52	31	2	14	51	1.57
48915271--48915331	9	6.7	9	72	10	52	22	4	3	68	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48915273--48915327	20	2.8	20	84	10	62	21	5	3	69	1.25
48920390--48920440	19	2.8	18	77	16	59	84	3	3	7	0.86
48920394--48920441	25	1.9	24	91	4	69	81	4	6	8	0.98
48922145--48922673	87	6.1	87	90	0	799	29	22	24	24	1.99
48922810--48922937	44	2.9	45	84	3	170	31	18	25	25	1.98
48922964--48923047	42	2.0	42	83	4	107	27	15	26	30	1.96
48924503--48924563	9	6.7	9	72	10	52	22	4	3	68	1.23
48924505--48924559	20	2.8	20	84	10	62	21	5	3	69	1.25
48928448--48928517	21	3.4	21	92	3	108	41	15	27	15	1.88
48935623--48935718	24	4.0	24	90	0	147	43	7	28	20	1.78
48938031--48938063	16	2.0	17	88	5	50	48	3	6	42	1.43
48939431--48939485	21	2.6	21	79	0	65	12	7	58	21	1.59
48939479--48939541	21	3.0	21	80	0	72	14	7	60	17	1.57
48941161--48941194	14	2.5	13	86	9	50	73	2	0	23	0.97
48941990--48942069	40	2.0	40	100	0	160	32	2	30	35	1.71
48944100--48944160	16	3.6	16	78	10	59	49	3	1	45	1.28
48944100--48944160	17	3.5	17	80	6	61	49	3	1	45	1.28
48944311--48944373	9	6.6	10	71	10	51	53	1	1	42	1.19
48945901--48945930	12	2.6	11	90	10	51	10	50	33	6	1.62
48945904--48945929	12	2.2	12	100	0	52	7	53	30	7	1.57
48946353--48946386	3	11.3	3	100	0	68	32	0	0	67	0.91
48946933--48947075	72	2.0	72	92	0	241	27	16	18	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48955506--48955546	21	2.0	21	90	0	64	53	9	12	24	1.68
48955852--48955878	14	1.9	14	100	0	54	22	0	29	48	1.51
48956715--48956801	24	3.6	24	90	0	129	50	6	17	25	1.70
48963735--48963786	24	2.2	24	89	0	77	55	9	1	32	1.43
48966321--48966359	3	13.0	3	94	0	69	35	33	0	30	1.58
48973896--48973927	8	4.0	8	95	0	55	46	12	15	25	1.81
48976353--48976387	19	1.9	17	88	11	52	34	28	2	34	1.72
48981010--48981068	21	2.7	22	79	12	68	55	10	3	30	1.49
48991854--48991906	24	2.2	24	96	3	99	32	11	13	43	1.79
48995660--48996103	225	2.0	224	96	0	816	39	17	6	37	1.74
48996546--48996588	21	2.0	21	90	0	68	58	9	4	27	1.49
48997572--48997602	15	2.0	15	93	6	53	74	0	6	19	1.03
49000741--49000832	34	2.6	34	85	11	91	38	9	4	47	1.56
49000757--49000832	34	2.3	34	90	6	120	35	11	2	50	1.53
49005183--49005215	7	4.7	7	100	0	66	27	0	15	57	1.38
49005866--49005905	18	2.2	18	90	0	62	22	32	5	40	1.76
49006337--49006483	25	6.1	25	79	10	180	40	0	14	45	1.45
49007305--49007451	25	6.1	25	79	10	180	40	0	14	45	1.45
49005913--49007850	968	2.0	968	99	0	3860	30	20	19	29	1.97
49008988--49009445	117	3.8	117	87	6	598	32	21	14	31	1.93
49012402--49012454	25	2.1	25	100	0	106	49	11	16	22	1.78
49015214--49015768	43	12.9	43	87	1	738	30	25	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49016073--49016142	21	3.3	21	79	0	77	7	41	17	34	1.76
49017277--49017301	5	5.0	5	100	0	50	20	0	0	80	0.72
49017560--49017585	13	2.0	13	100	0	52	30	0	7	61	1.24
49017804--49017880	16	4.7	16	68	6	55	37	10	3	48	1.56
49020492--49020518	12	2.2	12	100	0	54	22	40	0	37	1.54
49020825--49022510	843	2.0	843	100	0	3372	31	16	18	33	1.93
49022462--49022632	51	3.3	49	75	13	123	71	5	13	9	1.29
49023365--49023398	7	5.0	7	92	7	61	70	0	14	14	1.17
49023365--49023398	13	2.5	14	95	4	61	70	0	14	14	1.17
49024696--49024818	44	2.8	43	73	4	113	36	20	16	26	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313