genome.fa.s26.2.7.7.80.10.50.1000.216.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  216  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66463204--66463271	30	2.2	31	86	5	93	17	45	1	35	1.58
66463344--66463383	19	2.0	21	85	9	57	22	32	0	45	1.53
66463871--66463897	10	2.7	10	100	0	54	33	11	11	44	1.75
66471335--66471640	161	1.9	161	95	0	549	30	31	5	32	1.81
66473670--66473719	20	2.5	20	76	0	55	50	0	4	46	1.20
66475780--66475824	18	2.5	18	89	7	65	26	11	37	24	1.89
66476860--66477044	7	26.6	7	69	3	104	45	32	2	19	1.62
66476910--66476976	34	1.9	35	87	3	100	49	32	1	16	1.55
66476909--66477018	48	2.3	49	80	4	125	47	32	1	18	1.59
66476893--66477012	62	1.9	62	86	0	168	47	31	1	19	1.59
66477211--66477256	7	6.6	7	84	0	65	47	36	0	15	1.45
66478710--66478857	50	3.0	50	76	6	140	36	17	24	21	1.95
66485918--66486097	94	1.9	94	90	0	288	32	17	16	33	1.93
66488014--66488054	17	2.4	16	84	11	55	87	0	12	0	0.53
66503080--66503317	28	8.5	28	91	1	345	31	28	13	25	1.94
66503080--66503317	56	4.2	56	94	2	381	31	28	13	25	1.94
66509791--66510004	84	2.5	84	96	0	392	34	12	15	36	1.86
66509959--66510275	143	2.2	144	82	5	374	38	8	15	37	1.78
66510277--66510923	143	4.5	142	81	4	707	37	10	13	37	1.80
66510277--66510848	143	4.0	142	83	4	724	37	10	13	38	1.80
66510277--66510848	285	2.0	283	85	5	778	37	10	13	38	1.80
66510697--66511145	220	2.0	222	85	3	609	39	9	14	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66510929--66511393	143	3.3	142	76	3	439	38	9	14	37	1.79
66509959--66511381	648	2.2	651	91	1	2264	37	9	14	37	1.80
66511406--66511539	66	2.0	66	83	0	169	41	8	18	31	1.80
66511472--66511909	143	3.1	139	80	7	479	38	7	14	39	1.74
66512079--66512252	86	2.0	86	84	4	226	34	9	17	37	1.83
66512258--66512394	68	2.0	68	82	2	168	40	10	11	36	1.77
66512326--66512764	143	3.1	143	94	1	740	34	11	14	38	1.83
66512728--66512885	79	2.0	79	98	1	309	36	7	13	42	1.73
66512385--66513313	505	1.8	507	84	3	1291	36	10	15	38	1.81
66512807--66513941	143	7.9	142	78	8	838	38	7	15	38	1.76
66513760--66514185	233	1.8	233	87	3	642	35	10	16	38	1.83
66513993--66515635	143	11.5	142	78	7	1348	36	9	15	39	1.79
66513474--66514472	521	1.9	517	79	5	1111	37	8	14	39	1.78
66513993--66515635	285	5.7	284	79	6	1468	36	9	15	39	1.79
66513042--66514889	949	1.9	946	79	7	2008	37	8	15	38	1.78
66513993--66515635	428	3.8	428	78	7	1246	36	9	15	39	1.79
66515564--66515721	86	1.8	86	89	5	248	33	9	17	39	1.82
66515420--66515840	229	1.9	225	88	4	648	37	9	16	37	1.80
66515634--66517699	143	14.6	142	79	5	1943	36	9	15	38	1.80
66515634--66517702	285	7.3	286	81	5	2076	36	9	15	38	1.80
66517621--66517786	86	1.9	86	90	2	262	37	10	16	35	1.83
66517717--66518237	143	3.7	142	83	2	623	36	10	13	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66520734--66520842	50	2.2	50	83	6	132	25	29	25	19	1.98
66523213--66525383	143	15.4	141	77	7	1781	36	9	15	38	1.81
66523224--66525383	283	7.6	281	80	6	1967	36	9	15	38	1.81
66523213--66525340	710	3.0	698	79	8	2093	36	9	15	38	1.80
66527444--66527788	142	2.4	143	83	2	419	37	8	15	38	1.78
66527800--66528947	142	8.1	141	81	7	876	36	9	14	40	1.77
66527800--66528947	141	8.1	141	82	6	872	36	9	14	40	1.77
66528554--66528779	71	3.1	77	59	23	178	30	10	14	45	1.78
66528880--66529016	68	2.0	69	88	1	204	46	8	12	32	1.72
66528948--66531197	143	15.8	141	82	4	2097	37	9	15	38	1.79
66528496--66529446	499	1.9	497	81	5	1168	37	8	15	39	1.78
66531596--66531637	22	1.9	22	85	0	57	42	14	19	23	1.87
66531955--66532022	29	2.3	29	84	2	82	38	14	13	33	1.85
66539053--66539078	6	4.3	6	100	0	52	84	0	0	15	0.62
66539408--66539449	8	5.2	8	78	21	52	76	0	9	14	1.02
66539776--66539917	64	2.2	64	81	6	164	15	35	19	29	1.93
66554072--66554101	12	2.5	12	94	0	51	0	20	50	30	1.49
66558461--66558499	19	2.1	19	95	0	69	28	10	41	20	1.85
66567418--66567731	143	2.2	143	83	2	398	36	8	14	40	1.76
66567679--66567835	78	2.0	78	98	0	233	26	15	17	40	1.90
66567777--66570702	142	20.6	141	79	6	2570	36	8	15	39	1.79
66567777--66570702	285	10.3	285	80	5	2775	36	8	15	39	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66569078--66569102	7	3.6	7	100	0	50	28	0	16	56	1.41
66571945--66574511	143	18.0	141	80	5	2412	36	9	15	38	1.79
66571945--66580803	285	30.9	282	71	12	2811	36	9	15	39	1.79
66571945--66580801	858	10.5	842	69	13	3463	36	9	15	38	1.79
66571945--66574511	283	9.0	281	83	5	2346	36	9	15	38	1.79
66574513--66577899	142	24.3	141	70	11	1605	36	9	14	39	1.78
66576129--66577919	143	12.6	141	77	4	1558	36	9	14	39	1.79
66577816--66578003	104	1.8	104	80	4	227	31	11	14	42	1.81
66577920--66578369	144	3.2	143	85	2	550	38	8	14	38	1.78
66578300--66578490	100	1.9	100	83	4	251	34	10	23	31	1.89
66578157--66578612	243	1.9	240	81	5	562	36	9	18	35	1.84
66578401--66580803	143	16.9	142	81	4	2291	35	8	16	39	1.79
66582575--66582604	15	2.0	15	100	0	60	0	60	6	33	1.23
66585497--66585543	23	2.0	25	84	16	64	61	2	2	34	1.20
66595542--66595784	50	4.7	51	81	8	271	26	21	28	23	1.99
66596032--66596070	12	3.2	12	85	0	51	51	5	23	20	1.67
66596033--66596076	20	2.2	20	87	0	61	52	4	25	18	1.64
66599190--66599217	9	3.1	9	100	0	56	53	0	25	21	1.46
66609329--66609379	20	2.5	20	100	0	102	39	31	13	15	1.87
66612438--66612765	23	13.8	24	74	7	89	39	17	14	27	1.89
66612439--66612765	72	4.6	70	77	7	271	40	17	14	27	1.89
66612439--66612726	23	12.0	25	70	11	115	40	17	14	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66612446--66612765	48	6.7	46	72	7	201	40	17	15	27	1.89
66613600--66613697	42	2.3	43	92	3	164	27	24	8	39	1.83
66622516--66622672	48	3.3	47	85	4	206	33	30	14	21	1.93
66624833--66624882	21	2.5	20	87	6	66	28	4	24	44	1.72
66627799--66627932	27	5.0	27	75	3	119	23	28	14	34	1.93
66627827--66627947	54	2.2	53	86	5	163	23	28	14	33	1.94
66646791--66646833	22	2.0	21	82	13	52	41	0	0	58	0.98
66648325--66648365	18	2.2	19	91	4	66	60	0	0	39	0.96
66654750--66654959	40	5.3	39	89	4	242	25	21	27	25	1.99
66654697--66654959	120	2.2	120	82	4	309	25	21	27	25	1.99
66654698--66654994	80	3.7	80	81	6	230	26	21	27	24	1.99
66664427--66664604	40	4.5	39	85	4	198	26	20	27	25	1.99
66664433--66664604	80	2.2	79	85	3	229	25	21	27	25	1.99
66664460--66664637	79	2.2	80	82	3	200	25	21	28	24	1.99
66677497--66677552	20	2.7	21	83	10	62	64	8	5	21	1.42
66678261--66678559	50	5.9	50	81	4	271	27	20	28	23	1.99
66678262--66678507	50	4.8	50	85	3	294	26	20	30	22	1.99
66684541--66684582	20	2.0	22	90	9	70	45	14	0	40	1.45
66686591--66686620	15	2.0	15	93	0	51	46	3	6	43	1.46
66688676--66688727	25	2.1	25	92	0	86	15	26	15	42	1.87
66689854--66690037	38	4.7	37	68	17	122	42	1	3	51	1.29
66689836--66690194	120	3.0	120	96	0	646	43	1	3	51	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66698256--66698330	17	4.7	16	71	15	66	46	0	1	52	1.09
66702065--66702094	15	2.0	15	93	0	51	63	3	6	26	1.35
66711763--66711868	41	2.6	41	90	0	158	32	23	20	23	1.98
66719336--66719438	41	2.5	41	91	0	170	31	24	21	23	1.99
66725604--66725688	42	2.1	40	88	4	125	29	18	15	36	1.92
66734903--66735149	33	7.4	32	71	8	129	32	16	25	25	1.96
66734906--66735147	133	1.8	133	83	1	324	32	16	25	25	1.96
66740676--66740720	20	2.2	20	88	4	63	24	20	40	15	1.91
66747733--66747805	19	3.8	19	85	0	110	35	17	9	36	1.83
66748019--66748649	44	14.6	43	72	14	387	26	23	20	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313