genome.fa.s26.2.7.7.80.10.50.1000.201.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  201  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61743271--61743312	22	2.1	19	86	13	57	52	0	2	45	1.13
61743375--61743433	30	2.0	30	83	6	75	47	11	8	32	1.70
61744017--61744058	22	2.1	19	86	13	57	52	0	2	45	1.13
61744121--61744179	30	2.0	30	83	6	75	47	11	8	32	1.70
61743097--61744589	746	2.0	746	100	0	2986	41	13	9	35	1.77
61752228--61752265	11	3.5	11	88	0	58	26	2	42	28	1.69
61752800--61753035	118	2.0	118	99	0	463	39	12	4	43	1.62
61759347--61759405	25	2.4	25	91	0	91	35	18	20	25	1.95
61761277--61761318	21	2.0	22	81	13	52	11	7	4	76	1.15
61763963--61764155	50	3.8	50	84	0	260	19	30	23	26	1.98
61763962--61764155	100	1.9	101	89	1	300	19	30	23	26	1.98
61764250--61764281	13	2.5	13	94	0	55	56	12	0	31	1.37
61770762--61770802	20	2.0	20	95	0	73	29	21	0	48	1.50
61773750--61773829	39	2.1	39	85	0	106	36	20	28	15	1.92
61773806--61773887	39	2.1	39	86	0	110	34	14	32	18	1.91
61778131--61778222	37	2.5	37	82	8	107	46	1	21	30	1.58
61782975--61783083	39	2.8	39	82	0	137	34	18	28	18	1.94
61783003--61783076	20	3.8	20	70	3	60	29	17	32	20	1.95
61785880--61785928	24	2.0	24	100	0	98	12	8	24	55	1.64
61798154--61798191	9	4.1	10	83	16	55	26	31	0	42	1.56
61798155--61798191	18	2.1	18	100	0	74	27	29	0	43	1.55
61808612--61808735	27	4.6	27	82	8	144	45	19	18	16	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61808625--61808729	54	1.9	54	94	0	183	45	20	18	15	1.85
61808636--61808767	27	4.9	27	82	7	119	46	22	16	14	1.83
61808625--61808767	54	2.7	54	83	11	170	45	23	16	14	1.84
61808773--61808832	27	2.2	27	87	0	84	33	20	26	20	1.97
61808786--61808861	26	2.9	26	84	2	80	28	21	25	25	1.99
61808856--61808924	24	2.9	24	82	0	75	28	8	21	40	1.83
61808880--61808939	24	2.5	24	83	0	75	26	8	21	43	1.81
61809115--61809268	32	4.8	33	75	7	156	20	22	20	35	1.96
61809115--61809268	64	2.4	64	89	2	229	20	22	20	35	1.96
61813558--61813985	40	10.7	40	99	0	838	22	27	20	30	1.98
61836007--61836036	15	1.9	16	93	6	53	0	16	0	83	0.65
61838500--61838590	30	3.0	30	90	0	128	28	15	19	36	1.92
61838711--61838735	7	3.6	7	100	0	50	28	0	28	44	1.55
61841467--61841521	22	2.5	22	75	0	56	52	3	3	40	1.36
61842973--61843026	24	2.4	22	75	12	56	40	7	0	51	1.30
61846697--61846730	14	2.3	15	90	5	52	55	0	0	44	0.99
61846723--61846802	10	8.6	9	69	12	54	65	2	2	30	1.19
61846734--61846828	46	2.1	47	78	9	106	62	4	2	31	1.26
61846740--61846802	19	3.4	18	80	6	63	61	3	1	33	1.21
61847025--61847105	39	2.1	38	84	6	101	29	2	3	64	1.24
61847065--61847125	28	2.2	28	85	5	79	36	1	1	60	1.16
61856115--61856268	74	2.1	74	93	0	263	29	7	26	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61857144--61857297	74	2.1	74	93	0	263	29	7	26	37	1.83
61859461--61859591	45	2.9	45	80	0	145	43	13	17	25	1.86
61860888--61860922	17	2.1	17	100	0	70	22	0	31	45	1.53
61872769--61872820	23	2.3	23	83	6	61	30	25	21	23	1.99
61872816--61872879	23	2.8	23	85	0	83	32	17	15	34	1.91
61872843--61872891	11	4.3	12	72	12	50	36	16	12	34	1.86
61872916--61872985	36	1.9	36	85	0	95	35	20	14	30	1.92
61873133--61873189	24	2.4	24	85	5	71	33	22	21	22	1.97
61876540--61876570	11	2.8	11	100	0	62	54	0	0	45	0.99
61876526--61876629	39	2.6	40	84	7	140	62	0	1	35	1.06
61877614--61877673	31	1.9	31	83	10	77	36	3	5	55	1.38
61887613--61887655	17	2.7	16	86	13	54	41	0	18	39	1.51
61888177--61888206	15	2.0	15	93	0	51	63	6	0	30	1.20
61888592--61888639	17	2.5	20	75	25	59	68	10	8	12	1.39
61894491--61894760	135	2.0	134	82	5	330	24	18	17	38	1.92
61896107--61896139	17	1.9	17	88	11	50	30	3	21	45	1.67
61898865--61898923	26	2.3	26	85	5	75	47	11	11	28	1.76
61917630--61917662	13	2.5	13	100	0	66	39	33	0	27	1.57
61919545--61919656	44	2.6	43	82	5	136	28	18	22	30	1.97
61919463--61920097	45	14.5	45	71	12	358	30	19	23	26	1.98
61919675--61920094	133	3.2	133	74	8	340	30	19	22	26	1.98
61919815--61920132	174	1.8	174	87	4	480	33	18	20	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61919700--61920147	89	5.1	89	72	9	195	32	19	22	25	1.97
61921597--61921665	24	2.9	24	68	18	63	36	5	2	55	1.39
61921622--61921662	20	2.0	21	86	13	59	36	4	0	58	1.20
61925995--61926345	92	3.8	92	74	12	333	33	17	19	29	1.95
61925951--61926393	182	2.4	182	87	2	649	32	17	20	29	1.95
61926273--61926433	44	3.8	41	78	13	157	29	19	21	29	1.98
61926314--61926743	44	9.5	44	70	14	193	30	18	20	30	1.96
61926540--61926837	92	3.3	92	74	11	306	31	17	19	31	1.95
61926495--61926841	181	1.9	181	92	2	581	31	17	20	30	1.96
61926309--61926801	96	5.4	96	71	13	344	32	17	20	29	1.96
61926177--61926837	318	2.1	313	84	6	848	32	17	19	29	1.95
61928490--61928518	5	5.8	5	100	0	58	17	0	0	82	0.66
61939646--61939679	3	11.3	3	90	0	50	70	26	0	2	1.01
61941918--61942006	45	2.0	45	88	4	135	30	3	8	57	1.46
61942450--61942538	44	2.2	41	79	15	103	26	12	11	49	1.74
61942465--61942554	44	2.0	44	97	0	171	27	13	12	46	1.78
61947737--61947812	26	2.9	26	73	7	73	34	15	6	43	1.73
61947958--61947995	19	2.1	18	85	14	51	13	23	0	63	1.30
61950613--61950647	13	2.7	13	81	0	52	25	11	8	54	1.64
61952309--61952367	25	2.4	24	83	5	73	69	6	8	15	1.34
61955070--61955094	9	2.8	9	100	0	50	60	0	0	40	0.97
61955500--61955543	17	2.5	18	82	14	56	47	2	0	50	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61959968--61960026	29	2.0	29	81	12	68	47	22	8	22	1.77
61959977--61960040	29	2.2	29	86	8	85	46	23	6	23	1.74
61961573--61961998	22	19.4	22	85	0	557	42	18	11	27	1.85
61962910--61962950	18	2.3	18	100	0	82	39	14	0	46	1.45
61968863--61968899	13	2.8	13	100	0	74	48	16	5	29	1.68
61972610--61972737	34	3.8	34	77	8	134	67	0	30	1	1.06
61972823--61972876	28	2.0	27	85	3	72	42	3	9	44	1.54
61976343--61976376	16	2.1	17	88	5	52	64	11	0	23	1.26
61976677--61976741	27	2.4	27	84	0	85	21	30	29	18	1.97
61981315--61981354	21	1.9	21	85	10	55	37	12	0	50	1.41
61981781--61981871	27	3.4	27	86	3	130	20	24	32	21	1.98
61982109--61982137	3	9.7	3	100	0	58	34	0	0	65	0.93
61984689--61984779	27	3.4	27	83	3	112	21	30	24	23	1.99
61985625--61985675	22	2.5	21	81	18	63	50	13	17	17	1.77
61985830--61985855	9	2.9	9	100	0	52	57	0	0	42	0.98
61985919--61985986	31	2.2	30	85	12	86	42	0	0	57	0.98
61986050--61986106	15	3.5	15	76	17	60	49	0	1	49	1.11
61986030--61986088	19	3.0	19	76	9	64	47	1	3	47	1.29
62002668--62002713	20	2.3	20	92	7	76	54	2	2	41	1.25
62002977--62003033	21	2.8	20	81	7	53	33	3	1	61	1.23
62002958--62003020	22	2.7	24	78	7	67	39	1	1	57	1.18
62003000--62003079	19	4.3	19	74	16	69	33	6	0	60	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62003026--62003149	9	12.9	10	69	19	59	41	6	0	52	1.27
62002979--62003088	10	11.1	10	67	18	52	33	5	0	60	1.26
62003000--62003149	20	7.8	20	70	16	104	39	6	0	54	1.27
62002979--62003149	77	2.2	79	80	7	179	38	5	0	54	1.29
62012349--62012435	42	2.1	42	88	0	129	45	3	4	45	1.40
62012270--62012459	103	1.8	103	96	0	353	43	3	5	47	1.41
62015057--62015322	103	2.6	104	91	0	426	19	20	30	29	1.97
62022549--62022814	103	2.6	104	90	3	419	19	20	29	29	1.97
62031166--62031317	27	5.6	27	93	3	232	30	28	13	26	1.94
62031166--62031342	55	3.2	55	90	0	264	31	29	13	25	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313