genome.fa.s26.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  98  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32523688--32524031	172	2.0	172	99	0	679	34	20	16	28	1.95
32525852--32525884	3	11.0	3	100	0	66	66	0	0	33	0.92
32526340--32526436	28	3.6	28	79	13	114	46	19	6	27	1.74
32526340--32526442	52	2.0	52	88	3	154	45	20	5	28	1.74
32526354--32526442	24	3.5	24	75	14	90	47	20	5	26	1.72
32526406--32526459	24	2.2	24	83	6	63	51	18	1	27	1.56
32527469--32527545	13	5.9	13	80	6	75	29	7	28	33	1.85
32527712--32527833	30	4.0	29	69	23	83	46	1	1	50	1.21
32529021--32529060	20	2.1	19	95	4	71	62	0	0	37	0.95
32529035--32529064	12	2.5	12	94	0	51	63	0	0	36	0.95
32532779--32533088	46	6.7	45	69	15	156	23	26	19	30	1.98
32533610--32533704	46	2.1	46	91	0	154	29	21	10	38	1.86
32538104--32538188	31	2.7	31	89	5	118	29	29	15	25	1.96
32538282--32538619	35	9.7	35	83	4	387	32	24	12	31	1.92
32538284--32538619	70	4.8	70	90	0	494	32	24	12	31	1.92
32538284--32538619	105	3.2	104	87	0	474	32	24	12	31	1.92
32543386--32543793	187	2.2	188	88	0	611	22	27	19	29	1.98
32544896--32546284	492	2.8	492	94	0	2372	40	20	10	28	1.85
32549841--32549878	13	2.9	13	81	14	51	42	0	7	50	1.31
32552749--32552914	83	2.0	83	90	2	262	43	16	19	20	1.87
32553924--32553964	19	2.1	20	86	4	57	56	2	2	39	1.26
32566526--32566570	17	2.6	18	79	10	58	57	15	0	26	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32567920--32567973	19	3.0	19	78	7	60	48	0	0	51	1.00
32568719--32568775	19	2.8	21	75	22	66	54	1	0	43	1.10
32569171--32569243	27	2.7	27	91	0	119	21	28	26	23	1.99
32574753--32575031	62	4.5	62	93	0	452	37	5	7	48	1.55
32576183--32576209	14	1.9	14	100	0	54	37	3	22	37	1.72
32576184--32576217	14	2.4	14	90	0	50	41	2	17	38	1.65
32578182--32578219	17	2.4	16	86	8	51	2	36	2	57	1.26
32578235--32578269	5	7.0	5	100	0	70	0	60	0	40	0.97
32593405--32593526	38	3.2	37	87	9	158	34	14	23	27	1.94
32597934--32597967	6	5.3	6	86	13	50	64	5	0	29	1.17
32598926--32598963	20	1.9	20	94	0	67	15	31	31	21	1.94
32601075--32601118	3	14.7	3	100	0	88	68	0	0	31	0.90
32601073--32601129	6	8.9	7	94	5	63	66	0	1	31	1.02
32606821--32606856	13	2.7	13	91	4	54	52	19	0	27	1.46
32607442--32607476	3	11.7	3	100	0	70	68	0	0	31	0.90
32628398--32628463	27	2.7	24	80	15	80	43	0	36	19	1.51
32629524--32629559	18	2.0	18	89	10	56	44	0	22	33	1.53
32631199--32631264	34	1.9	34	81	6	80	27	22	24	25	2.00
32638924--32639003	34	2.4	34	80	0	97	32	21	22	23	1.98
32648297--32648331	15	2.3	15	90	0	52	65	0	5	28	1.15
32651320--32651347	5	5.6	5	100	0	56	82	0	0	17	0.68
32654354--32654427	36	2.1	36	100	0	148	50	13	14	21	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32664995--32665024	13	2.3	13	94	0	51	13	33	33	20	1.91
32673856--32674265	208	2.0	208	92	0	678	34	14	16	34	1.89
32678783--32678827	11	3.9	11	80	11	54	33	2	2	62	1.20
32679829--32680237	38	9.9	38	94	4	494	35	16	25	22	1.95
32680022--32680281	46	5.7	46	93	0	378	40	15	23	20	1.90
32679943--32680281	138	2.6	129	85	8	415	38	15	24	21	1.92
32680542--32680588	25	2.0	25	83	8	62	53	4	14	27	1.60
32683498--32683593	5	18.2	5	72	21	56	18	4	1	76	1.01
32683501--32683553	25	2.2	24	86	3	70	15	3	0	81	0.83
32683500--32683592	18	4.7	20	79	12	86	18	4	1	76	1.01
32683498--32683593	6	16.0	6	73	8	70	18	4	1	76	1.01
32688737--32688843	55	1.9	55	86	3	153	14	32	29	23	1.94
32690366--32690701	167	2.0	167	100	0	672	25	19	20	34	1.96
32692777--32693001	122	1.9	120	91	1	369	38	11	20	29	1.87
32710455--32710511	26	2.2	26	90	0	87	29	19	14	36	1.91
32715612--32715663	25	2.1	25	85	7	70	15	25	15	44	1.85
32716794--32716822	15	1.9	15	100	0	58	31	13	13	41	1.84
32716945--32716983	20	2.0	20	85	10	53	20	10	2	66	1.33
32729538--32729621	11	7.4	11	75	15	55	20	3	2	73	1.09
32729582--32729634	21	2.5	22	82	11	65	26	1	1	69	1.09
32729545--32729621	5	14.8	5	70	16	50	20	3	2	72	1.12
32729583--32729632	22	2.3	22	83	10	59	28	2	2	68	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32732951--32732992	17	2.6	17	85	10	54	40	0	0	59	0.97
32736823--32736874	26	2.0	26	100	0	104	34	7	19	38	1.80
32750161--32750193	6	5.5	6	96	0	57	18	0	0	81	0.68
32766646--32766677	3	10.3	3	93	6	55	34	0	0	65	0.93
32767236--32767286	21	2.4	21	81	15	61	23	5	9	60	1.50
32769864--32769929	21	3.2	20	78	16	64	57	4	4	33	1.39
32769903--32769938	12	3.0	12	88	11	56	58	0	0	41	0.98
32769820--32770063	130	1.8	134	78	11	279	55	2	8	33	1.44
32770155--32770190	14	2.6	14	91	8	56	50	0	8	41	1.33
32771905--32771973	31	2.2	31	82	10	88	27	17	5	49	1.69
32772025--32772149	57	2.2	58	80	2	144	39	11	15	34	1.83
32774783--32774810	7	4.0	7	100	0	56	28	0	14	57	1.38
32779487--32779574	34	2.6	34	81	12	101	29	25	22	22	1.99
32781844--32781982	60	2.3	59	82	8	165	25	25	20	28	1.99
32781975--32782030	19	2.8	20	79	12	62	33	25	16	25	1.95
32784017--32784060	19	2.4	18	85	7	54	40	9	0	50	1.34
32784523--32784592	36	2.0	35	82	2	86	24	44	0	31	1.54
32787943--32787979	18	2.0	19	94	5	67	32	10	29	27	1.90
32789771--32789870	42	2.3	42	81	3	101	35	25	15	25	1.94
32793565--32793617	26	2.0	26	100	0	106	41	15	11	32	1.82
32796364--32796479	43	2.7	43	79	11	123	33	22	15	28	1.95
32800010--32800124	43	2.7	43	81	6	153	25	17	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32800759--32800843	34	2.5	34	82	3	109	22	2	31	43	1.66
32805027--32805064	20	1.9	20	88	0	58	36	31	13	18	1.89
32807662--32807737	35	2.2	35	83	9	93	39	1	5	53	1.32
32809449--32809518	26	2.7	26	80	2	70	38	7	20	34	1.80
32812615--32812743	27	4.8	27	93	0	195	42	20	12	24	1.86
32812860--32812901	18	2.3	18	84	8	59	16	35	26	21	1.94
32816599--32816727	56	2.3	56	89	0	186	32	25	15	26	1.95
32820997--32821133	40	3.4	40	95	0	247	21	18	30	29	1.97
32827613--32827719	40	2.7	40	91	0	169	21	20	28	28	1.98
32831046--32831083	18	2.1	18	100	0	76	44	0	15	39	1.47
32831108--32831208	52	1.9	52	84	4	132	26	21	26	24	2.00
32841749--32842078	27	12.2	27	81	4	326	42	6	20	31	1.77
32841749--32842078	81	4.1	81	83	4	396	42	6	20	31	1.77
32842044--32842148	54	1.9	54	81	12	126	29	6	22	40	1.79
32842055--32842230	54	3.3	54	80	7	189	28	7	22	41	1.81
32842070--32842224	27	5.8	27	76	9	122	27	8	23	41	1.83
32847129--32847240	27	4.1	27	82	7	129	16	24	22	37	1.93
32847129--32847240	54	2.1	54	86	3	154	16	24	22	37	1.93
32850425--32850612	88	2.1	88	85	4	247	29	28	18	23	1.98
32857689--32857739	27	1.9	26	84	4	66	33	21	27	17	1.96
32857973--32858285	27	11.6	27	87	1	412	40	8	21	29	1.83
32857973--32858302	81	4.1	81	88	1	466	40	8	21	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32858287--32858371	27	3.2	25	77	18	75	27	9	21	42	1.83
32858294--32858448	54	2.9	53	74	10	152	27	8	23	40	1.84
32858323--32858448	27	4.7	27	79	8	114	28	7	24	39	1.82
32858296--32858448	27	5.7	26	76	9	112	28	7	24	39	1.83
32858948--32859054	45	2.4	45	88	1	169	25	16	28	29	1.97
32870079--32870139	31	2.0	31	87	6	88	36	4	22	36	1.76
32871174--32871297	46	2.7	46	91	3	196	17	20	28	33	1.96
32876859--32877124	137	1.9	137	96	0	487	24	18	24	33	1.97
32896776--32896953	27	6.6	27	83	3	205	26	15	28	29	1.96
32896777--32896932	82	1.9	81	88	3	233	26	15	28	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313