Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  158  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49948839--49948875
11
3.3
11
88
3
56
0
24
0
75
0.80
49948837--49948873
16
2.3
15
86
13
56
0
21
0
78
0.75
49949692--49949769
34
2.3
34
86
4
113
26
15
16
41
1.88
49950146--49950199
21
2.6
21
90
0
81
33
20
16
29
1.95
49956857--49957010
76
2.0
76
93
0
263
33
17
22
27
1.96
49957900--49957956
26
2.2
26
84
15
73
43
7
1
47
1.40
49957896--49957957
28
2.3
26
79
20
74
43
8
1
46
1.42
49965268--49965402
40
3.4
39
76
7
139
31
25
18
23
1.97
49965268--49965403
41
3.5
40
75
7
134
32
25
18
23
1.97
49966285--49966335
18
2.9
17
77
11
50
0
21
5
72
1.05
49966344--49966476
5
26.6
5
100
0
266
60
0
0
39
0.97
49970533--49970576
15
2.8
16
82
6
63
36
2
0
61
1.09
49976489--49976791
27
11.2
27
87
2
405
41
19
20
18
1.90
49977141--49977214
28
2.6
28
91
0
112
22
27
25
24
2.00
49985266--49985480
112
1.9
112
88
0
322
32
21
13
32
1.93
49996207--49996231
5
5.0
5
100
0
50
60
0
0
40
0.97
49996257--49996326
23
3.0
23
89
0
113
25
17
17
40
1.90
49997083--49997125
16
2.7
15
79
13
50
58
2
2
37
1.24
49998481--49998535
3
18.3
3
100
0
110
67
0
0
32
0.91
49998788--49998831
16
2.8
15
80
10
52
68
0
0
31
0.90
50005387--50005433
3
15.7
3
81
0
58
29
4
4
61
1.34
50005450--50005496
16
2.8
16
78
12
51
31
4
4
59
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50005697--50005738
16
2.7
16
85
3
59
35
0
4
59
1.19
50005697--50005744
14
3.5
13
78
18
53
37
0
4
58
1.18
50005783--50005835
21
2.5
21
81
6
54
32
1
9
56
1.42
50014405--50014497
46
2.0
46
87
0
132
47
18
19
15
1.83
50015789--50016193
50
8.1
50
71
1
299
32
24
19
23
1.97
50015800--50016194
100
4.0
100
91
0
619
33
23
18
23
1.97
50016112--50016277
87
1.9
87
91
2
271
36
22
16
24
1.94
50019379--50019417
18
2.2
17
86
13
53
33
0
20
46
1.51
50019644--50019688
23
2.0
23
95
0
81
20
22
24
33
1.97
50023469--50023580
48
2.3
48
92
0
188
35
5
8
50
1.57
50038772--50038801
15
2.0
15
100
0
60
53
6
0
40
1.27
50039867--50039900
16
2.1
16
88
0
50
20
14
20
44
1.87
50041941--50042076
50
2.7
51
82
3
150
25
17
25
31
1.97
50042054--50042090
14
2.6
14
100
0
74
21
18
27
32
1.97
50042369--50043022
327
2.0
327
100
0
1308
44
9
14
31
1.78
50052472--50052563
46
2.0
46
84
0
121
43
20
20
15
1.88
50052558--50052593
15
2.4
15
90
9
56
86
0
2
11
0.68
50053456--50053536
24
3.4
24
89
0
126
33
13
24
28
1.93
50053832--50053935
46
2.3
46
89
0
154
29
16
25
27
1.97
50054025--50054064
21
1.9
21
89
0
62
37
10
37
15
1.80
50056320--50056349
15
2.0
15
100
0
60
53
6
0
40
1.27
50059347--50059373
11
2.5
11
100
0
54
29
14
11
44
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50059659--50059702
19
2.4
19
88
3
63
31
36
18
13
1.90
50059891--50059964
11
6.6
11
81
6
87
24
31
1
43
1.63
50059890--50059966
22
3.5
22
83
15
104
24
29
1
44
1.62
50059890--50059964
33
2.2
33
86
9
107
24
30
1
44
1.62
50060579--50061142
126
4.5
125
88
3
810
29
24
16
29
1.96
50060579--50061142
251
2.2
251
89
1
846
29
24
16
29
1.96
50061260--50061290
9
3.4
9
95
0
53
54
25
0
19
1.44
50071666--50071734
31
2.2
31
84
0
84
37
5
14
42
1.70
50074059--50074102
19
2.2
20
88
4
63
72
4
2
20
1.13
50074059--50074225
9
17.5
10
67
17
79
63
3
2
30
1.24
50074114--50074189
28
2.7
28
85
6
91
61
2
2
32
1.23
50074079--50074210
37
3.6
35
77
17
115
62
2
2
33
1.20
50075605--50075781
86
2.1
86
93
0
300
49
15
17
17
1.80
50076752--50076919
10
17.4
10
75
16
90
38
1
1
58
1.16
50076753--50076877
9
12.8
9
75
18
58
38
1
0
59
1.13
50077423--50077484
28
2.1
29
82
11
74
54
3
1
40
1.26
50078324--50078392
25
2.8
23
82
10
75
65
0
2
31
1.08
50079467--50079553
37
2.4
37
84
3
104
22
16
16
44
1.85
50079549--50079642
36
2.6
36
79
1
98
18
29
13
38
1.89
50079503--50079642
37
3.8
37
77
2
104
20
25
14
40
1.90
50084223--50084281
30
1.9
31
86
3
84
28
20
3
47
1.66
50090294--50090334
16
2.6
16
85
11
50
46
9
7
36
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50091542--50091591
19
2.9
16
78
21
57
32
2
0
66
1.03
50091939--50091967
15
2.0
15
93
6
51
62
0
3
34
1.12
50102185--50102242
27
2.1
27
90
0
89
43
8
6
41
1.62
50105116--50105217
41
2.5
40
84
6
123
27
25
18
28
1.98
50106868--50106892
13
1.9
13
100
0
50
68
24
0
8
1.16
50113281--50113514
113
2.1
113
82
8
282
21
22
24
31
1.98
50113852--50113900
18
2.5
21
80
9
59
61
10
2
26
1.39
50114166--50114196
15
2.0
16
93
6
55
16
0
45
38
1.47
50114488--50114565
14
5.6
14
73
0
66
7
0
44
47
1.31
50114984--50115492
230
2.2
230
89
1
761
28
18
19
33
1.95
50115822--50115865
19
2.3
19
84
0
61
31
43
2
22
1.66
50117379--50117440
20
3.2
20
86
4
90
46
8
4
40
1.55
50117499--50117589
19
5.1
18
68
17
64
50
20
0
28
1.49
50117479--50117618
26
5.4
26
94
0
246
49
20
0
30
1.49
50117510--50117589
19
4.5
19
70
20
73
50
20
0
30
1.49
50118666--50118868
42
4.8
42
98
0
370
22
21
21
33
1.97
50119871--50119959
45
2.0
45
90
0
142
49
13
19
17
1.79
50125915--50125998
32
2.6
32
94
0
141
44
14
7
34
1.72
50128025--50128167
25
5.8
25
72
6
87
19
25
20
33
1.97
50131108--50131133
11
2.4
11
100
0
52
76
7
0
15
0.99
50131118--50131153
10
3.6
10
92
0
54
69
2
0
27
1.02
50131140--50131199
18
3.3
18
83
6
68
58
5
0
36
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50131129--50131199
19
3.7
19
81
5
81
59
4
0
36
1.17
50131178--50131230
25
2.2
24
83
10
63
52
5
0
41
1.25
50137713--50137984
143
1.9
143
96
0
508
41
24
17
16
1.89
50143864--50143888
9
2.8
9
100
0
50
40
0
0
60
0.97
50144222--50144265
13
3.3
13
83
3
52
63
2
0
34
1.07
50146257--50146317
24
2.5
24
74
10
70
55
3
1
39
1.26
50150720--50151680
44
22.2
44
72
9
514
30
20
16
31
1.95
50150740--50151285
129
4.2
129
94
0
853
30
20
16
32
1.95
50150660--50151463
85
9.3
86
72
10
315
30
21
16
31
1.95
50150960--50151506
173
3.2
172
78
7
651
30
21
16
31
1.95
50151089--50151502
217
1.9
217
94
0
729
30
22
16
31
1.95
50150960--50151680
346
2.1
347
92
2
1207
30
21
16
31
1.96
50151300--50151637
129
2.6
129
94
0
577
30
22
16
29
1.96
50151049--50151727
173
3.9
173
79
6
748
30
21
16
31
1.96
50151735--50151894
88
1.8
88
82
4
207
25
24
23
26
2.00
50153146--50153175
8
3.6
8
91
8
51
10
10
0
80
0.92
50153146--50153179
9
3.9
9
96
3
61
11
11
0
76
1.02
50155639--50155679
14
3.0
15
86
13
54
7
14
0
78
0.96
50155639--50155681
13
3.2
13
81
12
52
6
16
0
76
0.99
50156563--50156594
3
10.7
3
100
0
64
34
0
0
65
0.93
50156670--50156695
5
5.2
5
100
0
52
19
0
0
80
0.71
50158213--50158321
37
3.0
37
93
2
177
24
22
16
36
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50158285--50158491
46
4.6
46
76
20
220
28
21
13
36
1.92
50158285--50158403
52
2.2
52
89
5
177
26
22
13
36
1.92
50158383--50158455
36
2.0
36
97
0
137
27
20
15
36
1.92
50158338--50158491
82
1.9
81
87
4
229
28
22
13
35
1.92
50163404--50163443
22
2.0
21
85
14
57
55
2
5
37
1.35
50188384--50188440
30
2.0
28
83
13
71
50
3
21
24
1.64
50188391--50188454
29
2.2
29
77
8
67
51
3
21
23
1.62
50190257--50190287
14
2.2
14
100
0
62
54
9
6
29
1.57
50191107--50191405
46
6.6
46
95
1
516
33
15
21
29
1.94
50193276--50193326
23
2.2
24
85
3
68
56
5
1
35
1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313