genome.fa.s26.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  144  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46282317--46282395	34	2.3	33	82	8	97	75	0	20	3	0.95
46282312--46282390	20	3.7	19	76	23	70	77	0	17	5	0.95
46282668--46282755	45	1.9	46	83	2	115	28	12	9	50	1.71
46282725--46282920	108	1.8	108	87	2	295	26	17	10	45	1.80
46285470--46285503	10	3.6	9	85	14	50	79	0	8	11	0.94
46286331--46287062	87	8.3	87	68	10	297	27	21	20	30	1.98
46286545--46287090	44	12.3	45	70	12	173	26	22	20	30	1.98
46286320--46286703	174	2.2	175	92	1	655	27	21	20	30	1.98
46286321--46287004	44	15.4	44	69	12	188	27	21	19	31	1.98
46287078--46287496	86	4.8	86	86	3	468	25	23	22	29	1.99
46287153--46287288	43	3.1	43	67	17	109	26	25	20	27	1.99
46287182--46287320	44	3.2	44	67	13	115	25	22	24	28	2.00
46287312--46287446	44	3.1	44	63	16	118	28	22	20	28	1.99
46287098--46287504	174	2.3	173	82	5	491	24	22	22	29	1.99
46292214--46292262	19	2.5	20	80	6	57	40	12	20	26	1.87
46295825--46296051	44	5.2	44	66	17	148	23	24	25	26	2.00
46295774--46296435	88	7.5	88	84	3	767	27	23	24	24	2.00
46296135--46296273	44	3.2	43	67	15	113	25	25	25	24	2.00
46296167--46296304	44	3.2	43	69	8	134	24	22	28	24	2.00
46296581--46297740	84	13.9	84	94	2	1564	33	22	21	22	1.97
46297422--46297762	83	4.1	83	95	1	587	33	23	20	22	1.97
46298808--46298855	13	3.7	13	78	8	53	29	0	6	64	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46298832--46298865	17	2.0	17	88	0	50	32	2	2	61	1.26
46300343--46300391	25	2.0	25	83	0	62	59	6	4	30	1.41
46301990--46302031	22	1.9	22	85	9	59	26	16	16	40	1.90
46310363--46310406	18	2.6	16	83	13	61	52	0	0	47	1.00
46310368--46310410	18	2.4	18	100	0	86	53	0	0	46	1.00
46310423--46310510	33	2.7	32	80	13	99	48	14	9	27	1.74
46310491--46310555	34	1.9	33	84	9	87	41	13	7	36	1.74
46310540--46310674	67	2.0	67	85	0	180	37	18	8	35	1.82
46317622--46317657	18	2.0	18	100	0	72	11	16	27	44	1.82
46322780--46323232	44	9.8	44	72	14	315	28	21	18	31	1.97
46322744--46323094	98	3.7	98	84	9	472	27	20	19	31	1.97
46322834--46323188	188	1.9	187	87	3	516	28	20	18	32	1.97
46322922--46323202	144	2.0	142	81	4	332	27	22	18	32	1.97
46323066--46323275	88	2.4	90	80	6	223	29	22	17	30	1.97
46323115--46323275	44	3.6	44	81	6	157	29	23	19	27	1.98
46332296--46332395	49	2.0	49	98	0	191	20	31	16	33	1.94
46337206--46337314	56	1.9	57	98	1	211	54	21	11	13	1.70
46337913--46338455	44	11.9	46	76	9	481	26	22	20	30	1.99
46337916--46338350	90	4.8	90	98	0	836	25	22	20	30	1.98
46338299--46338402	52	2.0	52	98	0	199	25	26	22	25	2.00
46347439--46347499	30	2.0	30	96	0	113	19	29	16	34	1.94
46354549--46354608	30	2.0	31	86	3	86	43	8	5	43	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46363872--46363960	37	2.4	37	92	0	151	42	14	7	34	1.75
46364003--46364078	33	2.3	33	97	0	143	43	15	5	35	1.70
46366112--46366227	36	3.2	35	82	4	135	31	49	5	14	1.65
46366210--46366244	3	11.7	3	93	0	61	31	65	0	2	1.07
46366129--46366225	36	2.7	37	87	6	137	29	49	6	14	1.67
46372606--46372644	14	2.8	14	84	0	51	33	7	15	43	1.75
46372614--46372679	34	1.9	35	87	3	98	33	9	13	43	1.76
46372628--46372666	20	2.0	20	84	0	51	30	10	12	46	1.75
46378506--46378608	52	2.0	51	90	7	163	44	4	11	38	1.62
46378742--46378783	22	2.0	22	90	4	68	45	7	9	38	1.64
46378771--46378871	33	3.1	30	71	18	78	50	1	0	46	1.19
46383791--46383846	15	3.7	15	77	11	53	67	5	1	25	1.21
46383816--46383855	21	1.9	21	84	0	53	75	2	0	22	0.93
46384605--46384767	49	3.3	49	100	0	326	42	16	6	34	1.73
46387361--46387441	42	1.9	42	90	5	128	24	14	18	41	1.88
46391283--46391354	10	7.6	9	77	14	65	83	0	11	5	0.80
46391283--46391354	23	3.1	22	76	13	65	83	0	11	5	0.80
46392732--46392866	45	3.0	45	65	8	105	32	18	22	25	1.97
46392877--46393038	43	3.7	43	70	8	112	30	24	24	20	1.99
46392920--46393082	44	3.7	44	69	8	134	29	22	25	23	1.99
46392874--46393083	87	2.4	87	92	0	357	30	23	23	22	1.99
46393136--46393313	43	4.1	44	64	17	104	33	20	19	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46393081--46393372	129	2.3	129	92	0	485	32	21	19	26	1.97
46393345--46393394	22	2.2	22	96	3	91	20	26	20	34	1.96
46394139--46394165	14	1.9	14	100	0	54	14	7	3	74	1.18
46395328--46395366	12	3.2	12	85	0	51	48	20	0	30	1.50
46395376--46395439	26	2.4	28	77	12	73	39	7	4	48	1.53
46401945--46402079	40	3.4	41	77	9	118	37	22	22	17	1.94
46402119--46402297	41	4.4	41	88	4	263	13	22	27	35	1.92
46402119--46402326	82	2.5	82	91	0	326	14	24	26	34	1.94
46402119--46402326	41	5.1	41	83	11	239	14	24	26	34	1.94
46407941--46407981	15	2.8	15	81	3	57	26	0	34	39	1.57
46409279--46409350	37	1.9	38	88	2	110	19	1	43	36	1.60
46409317--46409371	25	2.3	24	81	15	69	18	0	47	34	1.49
46412293--46412339	23	2.0	23	95	0	85	44	21	2	31	1.64
46412290--46412342	16	3.3	16	76	15	56	43	22	1	32	1.64
46413931--46414065	40	3.4	41	77	9	118	37	22	22	17	1.94
46414105--46414237	41	3.2	40	88	4	194	14	23	28	33	1.94
46415302--46417462	31	72.2	33	64	27	566	42	12	2	42	1.54
46415330--46415375	9	5.6	9	89	10	64	43	23	0	32	1.54
46415442--46416667	56	21.6	56	96	3	2213	41	12	1	44	1.53
46416516--46416602	9	10.6	9	69	22	57	44	17	2	35	1.61
46416553--46416599	23	2.0	23	95	0	85	44	21	2	31	1.64
46416550--46416602	16	3.3	16	76	15	56	43	22	1	32	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46416506--46416833	167	2.0	159	91	5	523	44	13	0	41	1.49
46416717--46417666	9	107.3	9	66	21	114	44	13	3	39	1.59
46416717--46416762	16	2.9	16	96	0	83	47	21	0	30	1.51
46416673--46417462	195	4.1	189	88	6	951	45	11	3	40	1.56
46416782--46417462	65	10.5	65	90	5	967	45	11	3	39	1.57
46417450--46417596	16	8.8	16	72	14	93	43	18	1	36	1.59
46417450--46417576	25	5.1	24	67	16	64	43	17	0	38	1.55
46417449--46417596	34	4.4	32	72	15	95	43	18	1	36	1.58
46417634--46417666	16	2.1	16	94	0	57	51	18	0	30	1.46
46420889--46421059	66	2.6	65	85	6	220	42	18	26	12	1.85
46421041--46421142	21	4.9	21	81	0	114	36	16	42	4	1.70
46421494--46421714	43	5.1	43	78	3	221	24	17	30	28	1.97
46421494--46421717	86	2.6	86	83	5	292	24	17	30	27	1.97
46422032--46422099	27	2.5	27	80	4	75	55	7	7	29	1.54
46422080--46422119	16	2.5	16	84	8	55	55	5	5	35	1.44
46422236--46422274	3	13.3	3	83	5	53	61	0	2	35	1.10
46423575--46424134	100	5.6	100	88	3	804	24	25	21	28	1.99
46423588--46424141	50	11.1	50	64	6	260	24	25	21	28	1.99
46425542--46425591	7	7.0	7	80	13	57	14	12	0	74	1.09
46432033--46432082	26	2.0	25	88	4	73	2	34	0	64	1.05
46433032--46433107	23	3.4	22	70	5	71	21	21	21	36	1.95
46434079--46434362	100	2.9	97	77	11	292	42	3	5	48	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46434305--46434362	28	2.0	29	86	3	82	34	1	8	55	1.41
46446534--46446575	17	2.6	17	81	7	52	35	2	16	45	1.61
46449502--46449526	8	3.1	8	100	0	50	36	0	40	24	1.55
46462141--46462337	97	2.0	97	95	0	349	37	22	18	22	1.94
46462986--46463236	74	3.4	73	83	9	309	33	19	21	25	1.97
46463016--46463179	34	4.4	40	70	22	113	35	18	20	25	1.95
46463002--46463227	35	6.2	35	69	19	108	34	18	20	26	1.96
46464710--46464769	30	2.0	31	87	9	88	41	0	36	21	1.54
46464952--46464976	9	2.8	9	100	0	50	32	12	12	44	1.78
46465464--46465507	7	6.4	7	85	15	65	54	0	0	45	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313