genome.fa.s26.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  135  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43685441--43685474	18	1.9	18	88	5	52	38	0	41	20	1.53
43689471--43689975	255	2.0	255	99	0	1001	23	14	44	17	1.85
43693497--43693551	24	2.3	23	81	3	56	36	16	23	23	1.94
43693514--43693567	23	2.3	23	83	3	63	27	16	25	29	1.97
43693862--43693894	16	2.0	17	88	5	50	45	9	0	45	1.35
43694743--43694831	31	2.8	31	84	1	106	42	4	2	50	1.35
43703719--43703780	30	2.1	30	82	11	74	20	50	0	29	1.49
43706771--43706795	11	2.3	11	100	0	50	40	0	0	60	0.97
43712672--43712754	10	8.3	10	67	23	50	42	1	0	56	1.07
43712672--43712798	11	11.7	11	66	21	56	44	3	0	51	1.17
43712712--43712748	18	1.9	19	89	10	58	45	0	0	54	1.00
43712705--43712754	21	2.4	22	80	12	70	48	0	0	52	1.00
43719788--43719838	14	3.6	14	74	12	50	35	3	1	58	1.28
43722441--43722479	20	2.0	20	94	0	69	17	28	15	38	1.91
43722445--43722494	20	2.5	19	84	12	64	18	26	18	38	1.93
43734045--43734076	13	2.5	13	94	0	55	31	0	12	56	1.37
43734216--43734246	16	1.9	16	93	0	53	35	3	32	29	1.73
43741353--43741467	60	1.9	60	87	0	167	47	5	17	29	1.69
43744728--43744785	29	2.0	30	96	3	109	41	8	29	20	1.82
43745501--43745538	17	2.1	19	85	9	53	73	0	0	26	0.83
43745458--43745571	43	2.6	44	78	10	112	68	1	4	25	1.18
43756179--43756238	29	2.1	29	84	12	79	28	20	5	46	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43758724--43758756	16	2.1	16	88	5	50	27	21	18	33	1.96
43763399--43763476	30	2.6	30	77	2	75	46	17	10	25	1.80
43764800--43764865	19	3.4	19	70	27	57	36	1	1	60	1.15
43789473--43789518	25	1.9	25	91	8	78	39	0	2	58	1.10
43795112--43795246	42	3.2	42	78	0	153	16	22	17	43	1.87
43798398--43798438	20	2.1	19	86	13	57	46	4	7	41	1.53
43806991--43807037	21	2.2	22	92	3	78	21	38	19	21	1.94
43812631--43812685	20	2.5	22	82	11	69	49	0	0	50	1.00
43812650--43812689	21	1.9	21	85	10	55	57	0	0	42	0.98
43816440--43816495	15	3.4	16	78	11	53	67	1	1	28	1.10
43816331--43816495	9	18.4	9	67	23	66	62	3	4	30	1.29
43816439--43816500	25	2.6	23	78	12	63	67	1	1	29	1.09
43816469--43816524	28	2.0	28	83	10	71	64	1	5	28	1.26
43819361--43819414	19	2.7	20	80	8	74	59	5	0	35	1.21
43819591--43819645	9	6.2	9	73	10	51	60	1	3	34	1.25
43819591--43819645	27	2.1	26	82	3	65	60	1	3	34	1.25
43822710--43822754	22	2.1	22	87	4	65	68	4	11	15	1.34
43826780--43826808	15	2.0	15	93	6	51	51	6	6	34	1.55
43827454--43827515	22	2.7	22	87	5	79	48	0	1	50	1.10
43827489--43827530	16	2.6	16	96	0	75	47	0	7	45	1.30
43827460--43827515	23	2.5	23	85	2	78	51	0	1	46	1.11
43827652--43827695	24	1.9	24	90	9	74	61	2	0	36	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43837817--43837861	22	2.0	22	91	0	72	26	6	13	53	1.64
43838912--43838952	21	2.0	21	90	4	66	65	24	7	2	1.30
43840504--43840574	25	2.8	25	93	0	115	38	21	21	19	1.94
43841527--43841619	5	18.6	5	95	0	159	58	2	0	39	1.10
43841533--43841667	35	3.9	34	83	8	98	51	2	0	45	1.16
43845274--43845397	65	1.9	65	93	0	212	35	8	26	29	1.85
43846136--43846165	13	2.4	12	94	5	51	83	0	16	0	0.65
43846136--43846165	6	4.8	6	92	8	51	83	0	16	0	0.65
43849492--43849546	24	2.2	25	84	9	69	38	3	40	18	1.68
43852060--43852093	15	2.3	15	90	10	52	61	0	0	38	0.96
43859608--43859640	6	5.3	6	96	3	57	15	0	3	81	0.80
43866063--43866096	16	2.2	15	89	5	50	70	2	0	26	1.01
43868592--43868635	18	2.6	17	85	7	54	68	0	0	31	0.90
43868670--43868707	16	2.4	16	86	8	51	65	0	0	34	0.93
43868681--43868715	16	2.2	16	89	0	52	62	2	0	34	1.10
43876364--43876477	43	2.7	42	82	5	140	46	18	7	28	1.75
43882074--43882129	22	2.4	23	79	8	60	28	0	5	66	1.14
43889065--43889103	13	2.9	14	84	7	53	51	7	2	38	1.44
43889068--43889112	14	3.3	14	84	3	56	44	6	6	42	1.57
43889070--43889114	13	3.4	13	84	6	54	46	6	6	40	1.56
43898358--43898405	11	4.4	11	81	0	51	58	6	10	25	1.54
43900159--43900196	18	2.2	18	85	4	51	47	10	0	42	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43907614--43907789	71	2.5	70	83	3	194	29	13	22	34	1.93
43907807--43908136	75	4.4	74	86	3	430	32	15	19	33	1.93
43907793--43908136	147	2.3	147	85	5	478	31	14	18	34	1.92
43908029--43908392	127	2.8	128	78	6	371	27	15	22	35	1.94
43909307--43909421	44	2.6	44	84	2	140	35	13	22	28	1.92
43909307--43909440	46	3.0	45	81	4	144	35	13	23	27	1.93
43910745--43910997	73	3.5	72	92	3	400	32	18	18	31	1.95
43911961--43911988	3	9.3	3	100	0	56	32	0	0	67	0.91
43911948--43912194	126	2.0	126	82	9	308	30	6	6	57	1.48
43917835--43917879	21	2.2	20	88	4	63	51	2	0	46	1.13
43917869--43917893	7	3.6	7	100	0	50	72	0	0	28	0.86
43919164--43919691	262	2.0	262	98	0	1011	31	21	17	30	1.96
43936158--43936236	37	2.1	38	88	6	117	27	10	32	29	1.89
43936196--43936296	51	2.0	51	96	0	184	23	15	33	26	1.95
43939417--43939477	23	2.7	23	71	19	63	40	8	4	45	1.55
43944338--43944398	30	2.0	30	96	0	113	44	18	3	34	1.66
43951816--43951861	24	1.9	24	95	0	83	50	4	28	17	1.65
43954604--43954718	57	2.0	57	94	0	203	27	25	11	35	1.90
43954895--43954955	23	2.7	23	89	0	86	22	29	4	42	1.75
43960573--43960651	39	2.0	39	97	0	149	34	7	22	35	1.83
43968008--43968076	31	2.2	31	84	5	86	34	13	8	43	1.74
43978820--43979225	188	2.1	189	83	9	493	24	11	18	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43992724--43993812	44	24.1	44	75	7	571	32	15	21	29	1.94
43992691--43993812	89	12.4	88	78	7	770	32	15	21	29	1.94
43992781--43993782	133	7.4	133	77	7	751	32	15	21	29	1.95
43995440--43995483	21	2.3	18	84	11	52	29	6	4	59	1.44
43996386--43996507	2	61.0	2	100	0	244	50	0	0	50	1.00
43996793--43996832	15	2.8	14	85	7	53	65	0	7	27	1.20
43999298--43999455	48	3.3	48	100	0	316	31	13	12	41	1.82
43999796--43999867	35	2.1	35	91	0	117	41	13	9	34	1.78
44003152--44003207	27	2.1	26	90	3	85	53	23	7	14	1.64
44004820--44004852	15	2.1	16	88	5	50	81	0	3	15	0.80
44004819--44004852	14	2.3	14	90	10	50	79	0	2	17	0.86
44006530--44007221	44	15.6	44	77	5	532	28	20	18	32	1.96
44006551--44007221	132	5.0	132	81	4	621	28	20	18	33	1.96
44006861--44007042	94	1.9	94	80	0	211	30	19	17	32	1.95
44009319--44009381	3	21.7	3	73	12	51	34	3	3	58	1.30
44009818--44009854	15	2.5	14	87	12	56	75	0	8	16	1.02
44010150--44010183	16	2.0	18	88	11	54	50	0	20	29	1.49
44010590--44010621	3	10.7	3	100	0	64	34	0	0	65	0.93
44010940--44011041	37	2.6	37	74	9	89	21	20	25	32	1.98
44011581--44011618	19	2.0	19	100	0	76	42	0	15	42	1.47
44018228--44018266	19	2.1	19	90	0	60	53	15	0	30	1.42
44022074--44022116	21	2.0	22	82	13	54	13	2	13	69	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44028664--44028701	6	6.2	6	93	6	67	47	0	0	52	1.00
44029290--44029325	13	3.0	12	88	11	56	19	0	0	80	0.71
44036515--44036626	59	1.9	58	92	5	190	31	23	11	33	1.90
44047437--44048352	132	6.9	132	94	0	1517	28	16	26	28	1.97
44048423--44048572	45	3.2	45	67	18	124	28	19	22	29	1.98
44048390--44048578	97	2.0	95	94	2	333	29	19	22	29	1.98
44050108--44050158	3	17.3	3	75	4	50	33	1	3	60	1.26
44064753--44064785	2	16.5	2	100	0	66	48	51	0	0	1.00
44069896--44070660	382	2.0	382	90	2	1196	36	16	13	33	1.88
44071237--44071309	32	2.3	32	81	6	87	16	36	24	21	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313