genome.fa.s26.2.7.7.80.10.50.1000.226.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  226  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69557909--69557973	25	2.6	25	80	2	78	20	26	18	35	1.95
69565511--69565565	25	2.2	24	83	3	65	23	21	21	32	1.98
69565547--69565600	25	2.2	25	89	0	81	24	20	20	35	1.96
69579309--69579366	30	1.9	30	92	0	98	44	27	6	20	1.77
69586248--69586441	40	4.8	40	84	2	237	18	30	18	33	1.94
69586303--69586370	20	3.4	20	74	8	75	13	36	20	29	1.91
69586289--69586377	20	4.5	19	72	8	70	20	33	19	26	1.96
69590505--69590669	78	2.1	80	84	6	212	44	12	12	30	1.78
69593033--69593078	25	1.9	23	91	8	74	60	10	13	15	1.58
69593034--69593077	11	3.7	11	77	16	52	63	11	13	11	1.52
69608941--69609191	33	7.4	33	66	26	132	17	20	29	32	1.96
69608937--69609191	102	2.5	103	90	0	422	18	20	29	31	1.96
69610738--69611093	42	8.4	42	83	7	366	30	19	23	27	1.98
69611541--69611598	21	2.8	21	86	0	80	1	41	22	34	1.64
69617115--69617645	9	59.0	9	74	15	440	35	1	18	45	1.58
69617365--69617431	28	2.4	28	97	0	125	35	2	14	46	1.61
69617457--69617539	12	6.6	12	67	24	55	30	2	21	45	1.65
69617437--69617628	64	3.0	64	87	9	241	32	1	21	44	1.62
69617630--69617719	37	2.4	37	94	3	155	42	0	12	45	1.41
69617737--69617860	63	2.0	63	96	0	230	41	7	8	42	1.62
69617832--69617883	13	4.0	13	82	5	61	46	1	7	44	1.43
69619568--69619598	10	3.0	10	90	9	53	67	0	3	29	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69620426--69620762	147	2.3	147	80	3	374	37	20	14	27	1.91
69625084--69625114	15	2.1	15	93	0	53	38	6	0	54	1.26
69634577--69634650	31	2.4	31	100	0	148	45	12	14	27	1.80
69638894--69639011	25	4.5	27	69	7	91	25	25	20	28	1.99
69638891--69639011	52	2.3	52	89	0	197	25	25	19	28	1.99
69639657--69639704	20	2.4	20	77	19	55	60	4	18	16	1.51
69645563--69645853	50	5.8	50	79	2	282	27	21	28	23	1.99
69647554--69647807	56	4.8	53	87	5	295	28	18	27	25	1.98
69647559--69647856	56	5.7	50	86	3	231	28	19	26	25	1.98
69653267--69653302	13	2.8	13	100	0	72	33	13	16	36	1.89
69665758--69665795	19	2.0	19	85	10	51	21	42	0	36	1.53
69668790--69668961	40	4.3	40	85	2	213	27	27	20	23	1.99
69671705--69671912	27	7.8	26	86	3	281	14	20	23	40	1.90
69671704--69671912	80	2.6	80	86	3	294	15	20	23	40	1.90
69686928--69686977	19	2.9	17	75	16	50	12	6	14	68	1.39
69688219--69688257	19	2.1	19	85	9	53	38	2	17	41	1.64
69690932--69690972	11	3.5	11	93	6	64	39	12	9	39	1.76
69696256--69696358	43	2.4	43	100	0	206	22	15	35	26	1.94
69696340--69696413	29	2.5	30	85	10	100	25	14	33	25	1.94
69696770--69696906	40	3.4	39	81	7	123	27	21	26	24	2.00
69696724--69696920	80	2.5	81	80	5	204	25	22	26	25	2.00
69701876--69701954	37	2.1	37	90	0	122	24	18	31	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69702725--69703016	150	1.9	150	97	0	548	35	13	20	30	1.90
69703034--69703099	31	2.1	31	97	0	123	45	10	13	30	1.77
69703309--69703441	67	2.0	67	95	0	239	36	12	19	32	1.89
69712503--69712580	21	3.7	21	76	17	81	35	8	16	38	1.80
69715062--69715124	31	2.0	31	93	0	108	41	11	26	20	1.86
69719600--69720183	44	13.3	43	61	16	115	26	29	23	20	1.99
69719542--69720191	88	7.4	88	97	0	1176	27	29	23	19	1.98
69720218--69720974	44	17.8	44	81	8	904	30	17	24	27	1.98
69720218--69720974	126	5.9	126	83	8	810	30	17	24	27	1.98
69720213--69720974	170	4.5	170	88	4	1076	30	18	24	27	1.98
69720813--69720984	82	2.1	82	91	0	272	29	19	23	27	1.98
69721765--69721840	22	3.3	22	64	10	62	26	30	10	32	1.90
69721742--69721878	47	2.9	47	98	0	265	28	30	8	32	1.87
69724271--69724820	44	12.6	44	83	4	670	27	17	25	29	1.97
69724896--69725037	50	2.8	50	75	0	131	30	20	21	26	1.98
69725074--69725270	44	4.6	44	69	11	120	28	20	21	28	1.98
69725074--69725325	128	2.0	129	83	2	319	29	20	20	29	1.98
69726585--69726624	20	2.0	20	90	0	62	25	10	0	65	1.24
69726829--69726893	27	2.5	26	76	11	60	26	3	7	63	1.36
69728100--69728142	14	3.1	14	83	12	54	18	2	0	79	0.85
69728100--69728138	18	2.2	18	90	9	62	17	2	0	79	0.84
69728873--69728951	41	1.9	41	86	0	113	44	15	24	16	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69729136--69729214	25	3.2	25	71	10	72	20	40	11	27	1.87
69729470--69729514	22	2.0	23	86	4	65	22	2	11	64	1.36
69730190--69730341	28	5.2	28	66	25	100	44	6	3	45	1.46
69730208--69730361	27	5.2	31	65	25	98	42	5	3	48	1.43
69730172--69730379	59	3.5	59	98	0	398	43	5	3	47	1.44
69730376--69730458	43	1.9	43	95	0	148	46	9	4	38	1.58
69738441--69738929	247	2.0	247	90	0	771	24	16	28	30	1.97
69738852--69738890	18	2.1	19	85	4	53	28	15	15	41	1.87
69739159--69739185	6	4.5	6	100	0	54	14	0	0	85	0.61
69741977--69742057	25	3.2	25	75	3	74	37	12	16	34	1.86
69744140--69744164	12	2.1	12	100	0	50	24	0	24	52	1.48
69749918--69750000	43	1.9	43	85	4	114	34	28	12	24	1.91
69749970--69750051	43	1.9	43	82	0	101	29	18	19	32	1.95
69752673--69752742	35	2.0	35	94	0	122	32	15	27	24	1.95
69753192--69753350	54	3.0	51	78	15	153	22	18	21	37	1.94
69753220--69753350	53	2.5	53	91	1	208	21	19	21	38	1.94
69753219--69753350	27	4.9	27	88	1	203	21	18	21	37	1.94
69756139--69756302	60	2.8	60	99	0	321	57	0	12	29	1.35
69763098--69763140	2	21.5	2	95	0	77	0	2	46	51	1.13
69764913--69764970	19	2.7	22	84	10	68	37	8	15	37	1.78
69765854--69765909	28	2.0	28	100	0	112	46	3	17	32	1.66
69780841--69781017	27	6.5	27	81	3	167	25	15	29	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69780841--69780996	82	1.9	81	82	3	197	26	16	30	27	1.96
69780841--69781017	54	3.3	54	80	4	187	25	15	29	28	1.96
69780837--69781017	82	2.2	81	79	2	193	26	16	29	28	1.96
69783473--69783552	32	2.5	32	79	0	97	36	27	22	13	1.92
69783507--69783659	80	1.9	80	90	2	245	35	26	20	16	1.94
69783801--69783890	24	3.8	24	83	0	117	48	20	5	25	1.70
69783872--69783948	26	3.0	25	80	14	77	36	20	18	24	1.95
69783932--69784422	27	18.1	27	79	1	444	22	20	20	37	1.95
69783932--69784422	81	6.0	81	82	3	502	22	20	20	37	1.95
69792321--69792362	22	1.9	22	90	9	68	30	0	0	69	0.89
69792750--69793011	108	2.5	105	80	9	318	26	1	14	57	1.47
69796680--69796893	112	1.9	108	84	5	277	57	15	1	25	1.48
69798018--69798619	105	5.8	102	82	10	668	58	14	1	25	1.43
69798153--69798484	112	3.0	109	88	5	463	59	13	1	25	1.43
69798379--69798627	101	2.5	98	85	5	333	60	14	0	25	1.37
69798053--69798677	208	3.0	207	72	15	526	59	14	0	24	1.41
69799073--69799122	24	2.1	24	82	10	59	68	4	0	28	1.08
69802924--69802989	22	3.0	22	93	6	109	24	0	31	43	1.54
69803522--69803561	18	2.3	17	83	8	53	45	7	30	17	1.76
69807174--69807418	122	2.0	122	95	0	445	31	10	19	38	1.86
69832101--69832263	68	2.4	68	82	4	177	22	19	19	39	1.93
69837966--69838142	27	6.5	27	83	3	203	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69837967--69838122	82	1.9	81	88	3	233	26	15	28	29	1.96
69837963--69838142	82	2.2	81	83	3	227	27	15	27	30	1.96
69840050--69840080	16	1.9	16	93	0	53	9	6	6	77	1.12
69841763--69841825	20	3.0	20	76	17	65	46	1	3	49	1.27
69842356--69842507	38	4.0	38	83	0	187	27	23	19	28	1.98
69842325--69842507	76	2.4	75	82	2	217	27	23	19	29	1.98
69843570--69843626	16	3.2	17	76	13	62	43	0	0	56	0.99
69843564--69843638	22	3.3	22	71	14	62	46	0	0	53	1.00
69843588--69843635	25	1.9	25	82	0	60	47	0	0	52	1.00
69850657--69850691	15	2.3	15	90	0	52	80	0	0	20	0.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313