genome.fa.s26.2.7.7.80.10.50.1000.225.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  225  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69105111--69105153	21	2.0	22	81	9	52	25	16	25	32	1.96
69107680--69108552	448	1.9	448	97	0	1656	35	18	16	29	1.93
69108943--69109815	448	1.9	448	95	0	1584	36	18	16	29	1.92
69110209--69112422	448	4.9	448	96	0	3991	36	17	16	29	1.92
69112799--69113670	450	1.9	446	92	1	1458	36	18	15	29	1.92
69114057--69115367	447	2.9	446	93	2	2239	36	17	16	29	1.92
69115758--69116628	448	1.9	446	95	0	1580	36	18	15	29	1.92
69116204--69119063	815	3.5	813	96	0	5261	32	17	18	31	1.95
69121087--69121250	27	6.1	27	76	9	131	32	17	21	28	1.96
69125200--69125257	24	2.3	25	82	11	75	34	0	8	56	1.30
69127452--69127496	22	2.0	22	100	0	90	26	4	22	46	1.70
69128296--69128455	40	4.1	39	81	8	173	35	21	18	25	1.96
69128896--69129062	14	11.7	14	70	11	88	23	0	28	47	1.56
69128901--69129062	21	7.6	21	73	12	98	22	0	29	46	1.56
69128964--69129011	15	3.3	15	76	5	53	18	0	33	47	1.49
69128959--69129008	22	2.3	21	79	3	55	22	0	30	48	1.51
69128901--69129068	79	2.1	78	80	6	178	23	0	30	45	1.57
69128901--69129091	7	26.7	7	71	12	75	24	0	30	44	1.58
69132554--69132599	24	1.9	24	95	0	83	54	2	6	36	1.39
69140209--69140262	21	2.6	21	96	0	99	20	12	7	59	1.58
69154157--69154262	43	2.5	43	85	3	133	18	16	25	39	1.91
69154188--69154282	43	2.2	43	76	0	100	26	16	24	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69154502--69154610	35	3.1	35	78	5	128	30	6	33	30	1.83
69154502--69154610	37	3.0	37	81	5	125	30	6	33	30	1.83
69159753--69162467	890	3.0	891	91	4	4238	32	27	13	27	1.93
69167082--69167139	31	1.9	31	89	3	91	31	22	32	13	1.93
69170097--69170177	28	2.9	28	90	0	135	28	7	8	55	1.57
69173177--69173254	31	2.5	31	85	0	102	5	32	0	62	1.17
69177262--69177394	71	1.9	71	84	3	178	37	28	18	15	1.91
69177261--69177408	71	2.1	71	80	2	172	36	29	18	15	1.92
69177726--69177771	16	2.9	16	78	9	58	50	8	0	41	1.33
69186116--69186185	35	2.0	35	97	0	131	42	12	22	21	1.87
69188255--69188397	27	5.3	26	83	5	142	41	16	18	23	1.90
69196057--69196170	27	4.2	28	86	4	155	44	19	15	20	1.86
69196335--69196441	26	4.1	26	91	0	169	18	19	24	37	1.94
69196544--69196602	28	2.1	28	93	0	100	25	25	20	28	1.99
69196607--69197135	265	2.0	265	93	1	918	28	12	16	41	1.85
69203509--69204005	264	1.9	264	90	0	796	35	6	20	37	1.80
69209987--69210017	7	4.4	7	100	0	62	74	0	0	25	0.82
69214789--69214853	6	10.8	6	98	0	121	16	33	18	30	1.94
69216081--69216122	21	2.0	22	86	13	61	66	0	2	30	1.04
69216068--69216115	22	2.1	23	85	14	64	66	0	0	33	0.92
69217566--69217681	59	2.0	59	98	0	223	39	10	28	21	1.86
69227349--69227907	132	4.2	132	96	0	1001	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69227689--69227869	44	4.1	44	65	16	104	28	19	22	29	1.98
69235426--69235554	44	2.9	43	79	13	145	31	26	18	24	1.98
69238656--69238836	40	4.6	40	83	6	172	25	20	27	27	1.99
69246579--69246788	40	5.3	39	89	4	242	25	21	27	25	1.99
69246526--69246788	120	2.2	120	82	4	309	25	21	27	25	1.99
69246527--69246823	80	3.7	80	81	6	230	26	21	27	24	1.99
69267433--69267533	52	1.9	52	97	0	193	32	22	18	25	1.97
69273989--69274089	52	1.9	52	95	0	184	33	22	17	25	1.96
69277659--69277783	64	2.0	64	96	0	232	28	7	24	39	1.82
69285047--69285174	64	2.0	64	92	0	211	29	7	23	39	1.81
69310137--69310215	37	2.1	37	90	0	122	25	31	18	24	1.98
69310334--69310525	47	4.1	47	91	0	267	27	32	8	31	1.87
69323207--69323465	27	9.7	27	81	5	303	22	16	20	40	1.90
69323193--69323462	53	5.1	53	84	3	310	22	16	20	41	1.90
69334436--69334687	60	4.2	59	77	9	210	25	26	13	34	1.92
69334436--69334714	30	9.4	30	79	9	168	23	27	13	35	1.93
69334525--69334664	58	2.4	61	87	9	193	26	27	14	32	1.95
69338602--69338798	80	2.5	80	90	4	317	23	20	28	26	1.99
69338602--69338778	40	4.4	40	96	1	311	24	20	29	25	1.99
69348428--69348639	40	5.3	39	77	5	219	25	20	27	26	1.99
69348438--69348639	80	2.5	80	93	0	343	25	20	27	26	1.99
69350309--69350414	43	2.5	42	82	1	131	30	13	25	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69363357--69364785	750	1.9	745	81	5	1754	32	21	13	32	1.92
69385676--69385706	3	10.3	3	100	0	62	67	0	0	32	0.91
69385705--69385746	3	14.0	3	100	0	84	33	0	0	66	0.92
69388765--69388832	30	2.2	31	82	7	77	47	22	10	20	1.80
69388979--69389012	3	11.3	3	100	0	68	35	0	32	32	1.58
69389786--69389819	3	11.7	3	87	6	52	0	26	0	73	0.83
69389778--69389821	12	3.8	12	85	8	65	0	22	0	77	0.77
69390134--69390199	29	2.3	26	80	16	78	59	4	4	31	1.38
69394820--69394912	25	3.7	25	82	4	98	35	19	24	20	1.96
69394855--69394943	24	3.6	25	77	8	78	34	19	28	17	1.95
69396417--69396558	59	2.4	58	79	1	158	38	14	27	19	1.90
69401253--69401277	5	5.0	5	100	0	50	20	0	20	60	1.37
69408893--69408960	26	2.7	26	82	10	81	35	17	22	25	1.95
69413352--69413410	27	2.2	27	84	6	75	30	10	30	28	1.90
69417209--69417279	33	2.1	34	81	2	81	29	22	23	23	1.99
69417654--69418121	27	17.4	27	88	3	642	16	19	19	44	1.88
69429037--69429070	6	5.7	6	96	0	50	23	0	23	52	1.47
69429105--69429137	17	2.1	17	88	11	52	24	0	0	75	0.80
69430439--69430587	39	3.8	40	82	4	187	16	28	13	41	1.86
69430427--69430587	59	2.7	58	83	5	189	16	27	13	42	1.86
69430439--69430593	20	7.8	19	76	9	134	16	27	13	42	1.86
69433585--69433617	17	2.0	17	88	5	50	18	6	12	63	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69437778--69437829	20	2.6	20	84	0	77	11	25	21	42	1.86
69439297--69439380	26	3.2	26	82	1	78	22	22	21	33	1.97
69439322--69439380	27	2.2	26	84	3	73	18	22	22	37	1.94
69444157--69444186	12	2.5	12	94	0	51	6	23	40	30	1.80
69445592--69445639	23	2.0	24	84	4	62	56	12	2	29	1.48
69447327--69447370	22	2.0	21	83	12	54	38	4	15	40	1.68
69447656--69447919	40	6.7	40	89	5	360	25	21	27	25	1.99
69447656--69447952	119	2.5	118	81	9	338	26	21	27	25	1.99
69449507--69449620	20	5.7	20	81	2	122	9	23	18	48	1.77
69449514--69449611	40	2.5	40	87	0	142	10	24	17	47	1.78
69449629--69449676	20	2.4	20	92	0	87	18	27	22	31	1.97
69457172--69457290	20	5.9	20	73	3	87	14	27	18	39	1.89
69461120--69461168	20	2.5	20	81	15	66	12	24	6	57	1.58
69461435--69461611	50	3.6	49	83	1	194	22	29	21	26	1.99
69465745--69465805	2	30.5	2	100	0	122	0	49	0	50	1.00
69472192--69472298	55	1.9	55	94	3	189	40	13	9	37	1.76
69474708--69474732	8	3.1	8	100	0	50	60	12	0	28	1.32
69474856--69475106	25	10.2	25	71	14	130	19	26	18	34	1.95
69474889--69475122	74	3.2	73	78	11	244	21	25	19	33	1.97
69475061--69475132	25	2.8	26	83	8	87	23	27	19	29	1.98
69484919--69484943	3	8.3	3	100	0	50	0	68	0	32	0.90
69501722--69502020	108	2.8	109	86	4	396	37	18	15	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69502068--69502105	20	1.9	20	89	10	60	57	0	13	28	1.36
69502464--69502537	9	7.8	9	85	10	60	55	0	6	37	1.27
69503551--69503600	24	2.0	24	88	3	73	12	8	6	74	1.22
69506279--69506308	14	2.1	15	93	6	53	40	0	6	53	1.27
69506380--69506438	27	2.1	28	81	6	66	52	5	15	27	1.63
69506776--69506828	5	10.8	5	91	4	90	60	0	39	0	0.97
69514457--69514525	25	2.7	25	82	8	77	24	26	21	27	1.99
69515670--69515699	16	1.9	16	93	6	53	30	0	20	50	1.49
69521890--69521919	16	1.9	16	93	6	53	30	0	20	50	1.49
69551747--69551819	29	2.5	28	73	10	74	42	16	10	30	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313