genome.fa.s26.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  108  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35411280--35411357	40	1.9	41	82	10	97	26	28	20	24	1.99
35415558--35415735	27	6.6	27	84	3	205	29	28	15	26	1.96
35415579--35415734	82	1.9	81	88	3	233	29	28	15	26	1.96
35428887--35429058	40	4.3	40	80	5	188	25	26	23	24	2.00
35437204--35437230	12	2.2	12	100	0	54	51	7	0	40	1.30
35437679--35437804	28	4.5	28	92	2	191	26	12	27	32	1.93
35437679--35437804	55	2.2	57	90	2	193	26	12	27	32	1.93
35437707--35437817	28	4.0	27	91	3	143	29	11	25	33	1.91
35440772--35440840	32	2.1	33	91	2	113	31	11	20	36	1.88
35441456--35441569	52	2.2	52	85	0	147	37	14	19	28	1.91
35441460--35441559	24	4.0	24	72	10	92	40	16	18	26	1.90
35441595--35441743	51	2.9	51	91	4	239	32	14	24	28	1.95
35445370--35445439	35	2.0	35	91	0	113	42	25	7	24	1.80
35455791--35456549	379	2.0	379	100	0	1518	31	20	15	33	1.93
35460001--35460089	30	3.0	30	79	8	92	58	15	16	8	1.62
35460001--35460080	15	5.4	15	79	7	83	60	13	17	8	1.58
35460012--35460089	15	5.2	15	78	6	70	57	15	16	10	1.64
35463050--35463220	93	1.8	93	89	0	270	29	27	20	22	1.99
35463045--35463217	46	3.7	46	77	10	181	30	26	20	23	1.98
35466289--35466396	55	2.0	55	86	0	153	13	30	26	28	1.94
35477679--35477822	48	3.0	48	84	1	191	20	14	30	34	1.92
35485194--35485236	21	2.0	21	86	0	59	37	18	16	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35491463--35491502	21	1.9	21	94	0	71	45	15	12	27	1.82
35494383--35494546	43	3.8	43	80	0	168	32	23	14	29	1.94
35495890--35495962	32	2.2	32	80	4	83	50	24	10	13	1.74
35496981--35497090	49	2.2	49	82	3	141	34	12	11	40	1.80
35497139--35497222	40	2.1	40	97	0	159	38	9	7	45	1.64
35502018--35502042	9	2.8	9	100	0	50	32	0	12	56	1.36
35505845--35505884	3	13.0	3	94	5	71	32	0	0	67	0.91
35517859--35517900	19	2.0	20	86	13	59	59	7	0	33	1.25
35518811--35518859	23	2.1	24	84	3	64	65	6	18	10	1.43
35520506--35520674	85	2.0	85	95	0	302	36	13	17	33	1.88
35529965--35529990	5	5.2	5	100	0	52	38	19	19	23	1.93
35530136--35530179	19	2.3	19	88	0	61	59	25	2	13	1.46
35530247--35530638	215	1.8	212	91	4	653	56	20	5	17	1.62
35533297--35533353	29	2.0	29	82	6	71	29	24	17	28	1.97
35533580--35533614	16	2.2	16	89	0	52	11	22	14	51	1.74
35534712--35534759	16	3.0	16	84	6	62	18	4	22	54	1.61
35540901--35540991	29	3.2	29	81	10	107	29	31	14	24	1.94
35545624--35545669	23	2.0	23	84	12	60	45	10	6	36	1.65
35545631--35545675	23	2.0	23	82	8	56	40	13	8	37	1.76
35546257--35546452	59	3.4	58	90	6	251	30	24	18	26	1.98
35546315--35546452	59	2.3	59	100	0	276	31	25	16	26	1.97
35562702--35562748	25	2.0	25	83	8	62	27	14	4	53	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35562842--35563378	295	1.8	295	98	0	1047	25	23	12	38	1.90
35563484--35563621	59	2.3	59	100	0	276	31	25	16	26	1.97
35569594--35569679	43	2.0	45	86	4	122	69	10	17	2	1.27
35569743--35569780	3	12.3	3	88	5	58	68	0	2	28	1.03
35571402--35571505	25	4.2	25	82	4	131	40	20	5	33	1.76
35571402--35571523	50	2.4	50	83	5	140	38	19	5	36	1.76
35574244--35574354	31	3.6	30	73	17	111	41	0	8	49	1.38
35574220--35574349	61	2.1	61	91	0	215	43	0	6	49	1.35
35581164--35581254	44	2.1	44	95	0	164	50	13	8	27	1.70
35586561--35586586	13	2.0	13	100	0	52	38	0	15	46	1.46
35588768--35588844	31	2.5	32	77	10	88	40	1	3	54	1.27
35591204--35591336	46	2.9	46	86	0	176	41	14	23	21	1.89
35590982--35591753	265	2.9	268	88	6	1023	40	11	22	25	1.88
35591054--35591841	261	3.0	261	89	6	1102	40	10	21	26	1.86
35591858--35591904	25	2.0	25	83	8	62	53	4	14	27	1.60
35594887--35594942	29	2.0	28	92	3	94	42	8	3	44	1.53
35597485--35597513	13	2.1	14	93	6	51	44	0	0	55	0.99
35599519--35599578	30	2.0	30	90	0	93	58	13	1	26	1.45
35600652--35600694	9	4.9	9	81	13	54	65	0	0	34	0.93
35602956--35603011	18	3.5	15	81	18	60	37	10	16	35	1.83
35602962--35603025	17	3.6	17	87	8	92	37	12	14	35	1.83
35602954--35603032	35	2.2	37	86	13	121	37	10	16	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35602954--35603025	19	3.9	19	89	10	123	37	11	15	36	1.83
35602954--35603048	17	4.8	22	84	12	79	36	9	15	37	1.80
35605575--35605648	37	2.0	37	100	0	148	40	8	10	40	1.70
35607526--35607604	32	2.4	33	83	10	92	15	10	11	63	1.52
35616451--35616486	11	3.2	11	88	7	54	63	5	2	27	1.30
35616456--35616485	12	2.5	12	100	0	60	73	6	0	20	1.05
35620563--35620619	28	2.0	28	96	0	105	36	5	3	54	1.40
35621982--35622008	4	6.8	4	100	0	54	22	0	0	77	0.76
35623421--35623530	26	4.2	26	94	2	177	34	4	24	36	1.76
35627493--35627531	20	2.0	19	94	0	60	25	28	15	28	1.95
35630676--35630788	27	4.2	27	85	3	129	16	23	23	36	1.94
35630674--35630788	54	2.1	54	88	3	169	16	23	23	36	1.94
35639106--35639831	130	5.6	130	84	1	891	38	13	16	30	1.88
35639096--35639830	259	2.8	260	87	0	1015	38	13	17	31	1.88
35639589--35640051	224	2.1	224	82	1	561	38	14	17	29	1.89
35641288--35641339	24	2.1	26	82	10	65	46	21	13	19	1.84
35655748--35655844	29	3.3	29	80	5	90	39	23	13	23	1.90
35657311--35657437	47	2.7	47	86	2	166	35	29	14	19	1.92
35666919--35666957	15	2.6	15	79	0	51	43	0	35	20	1.52
35674950--35674988	21	1.9	20	84	5	51	30	0	7	61	1.24
35676089--35676201	60	1.9	60	85	3	156	36	18	4	40	1.71
35681537--35681615	34	2.3	34	88	0	122	37	15	12	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35682489--35682526	15	2.4	17	91	8	62	76	0	13	10	1.02
35684919--35684972	29	1.9	27	85	7	72	20	22	7	50	1.73
35685618--35685689	23	3.1	23	73	15	76	44	0	1	54	1.08
35687884--35687914	15	2.1	15	93	0	53	83	0	3	12	0.75
35694348--35694494	34	4.3	34	85	0	186	33	13	16	36	1.88
35694650--35694788	34	4.1	34	85	0	188	30	18	17	33	1.94
35694240--35694788	302	1.8	300	88	1	839	31	17	17	33	1.93
35695881--35696163	41	6.9	41	87	0	325	33	22	18	25	1.96
35695881--35696160	122	2.3	123	84	1	348	34	22	17	25	1.96
35696462--35696528	28	2.4	28	82	7	73	50	22	0	26	1.49
35696713--35696802	43	2.0	45	82	4	112	28	6	25	38	1.81
35698466--35698495	14	2.1	15	93	6	53	50	13	0	36	1.42
35700986--35701035	23	2.2	23	100	0	100	34	16	16	34	1.90
35701158--35701593	241	1.8	241	98	0	845	33	18	14	32	1.92
35705636--35705717	31	2.5	33	78	7	96	14	2	19	63	1.41
35708681--35708808	3	42.3	3	73	7	98	28	7	2	60	1.37
35709032--35709081	6	8.3	6	90	0	55	22	0	0	78	0.76
35709032--35709081	9	5.6	9	83	9	66	22	0	0	78	0.76
35709035--35709069	12	2.9	12	95	0	61	20	0	0	80	0.72
35710366--35710626	128	2.0	128	97	0	495	29	15	18	36	1.92
35726066--35726463	199	2.0	199	99	0	787	36	15	14	33	1.88
35730169--35730211	20	2.2	20	91	0	68	27	39	18	13	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35730175--35730220	20	2.3	20	88	0	65	23	36	23	15	1.93
35733255--35733288	17	2.1	17	94	5	61	55	11	5	26	1.58
35740371--35740422	19	2.7	20	85	8	63	61	5	0	32	1.20
35740370--35740428	19	3.0	20	80	11	61	59	5	0	35	1.20
35740391--35740466	18	4.3	18	70	12	52	60	2	0	36	1.11
35741545--35741601	28	2.0	28	83	6	71	63	1	19	15	1.40
35742021--35742075	3	18.7	3	84	3	58	67	0	30	1	1.01
35742040--35742075	14	2.5	14	90	4	54	61	0	38	0	0.96
35743122--35743152	16	1.9	16	100	0	62	35	0	0	64	0.94
35743784--35743828	21	2.1	21	87	0	63	15	6	20	57	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313