Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  162  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50917204--50917294
45
2.0
45
85
2
121
27
6
28
37
1.82
50917439--50917480
15
2.7
16
82
14
52
47
2
0
50
1.14
50917579--50917613
18
2.0
17
88
5
52
54
0
0
45
0.99
50918411--50918541
66
2.0
66
92
0
217
35
20
11
32
1.89
50936394--50936456
12
5.4
12
74
12
51
31
0
6
61
1.21
50938351--50938393
22
1.9
23
85
4
61
18
2
4
74
1.10
50942754--50942822
23
3.0
23
87
8
104
42
1
11
44
1.49
50942757--50942822
13
5.5
13
67
20
54
40
1
12
45
1.51
50943655--50943720
20
3.5
17
74
20
51
21
7
3
68
1.29
50948429--50948460
17
1.9
16
93
6
55
59
12
3
25
1.48
50950902--50950938
17
2.2
17
95
0
65
18
48
24
8
1.75
50951898--50951957
26
2.3
27
80
11
70
36
3
1
58
1.25
50952005--50952046
10
4.2
10
76
11
50
35
0
2
61
1.09
50952170--50952207
15
2.8
14
85
14
53
21
0
0
78
0.74
50952169--50952207
10
3.8
10
83
6
51
23
0
0
76
0.78
50953590--50953627
16
2.3
17
90
4
60
26
2
7
63
1.35
50957807--50957837
16
1.9
16
93
0
53
48
0
9
41
1.36
50957810--50957861
22
2.3
22
86
6
68
44
0
3
51
1.19
50960650--50960698
25
2.0
25
100
0
98
28
18
16
36
1.92
50961484--50961513
15
2.1
14
93
6
51
0
26
3
70
1.03
50961482--50961562
24
3.2
24
71
21
67
2
27
2
67
1.15
50961473--50961571
51
1.9
51
93
0
171
4
27
3
65
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50961502--50961573
23
2.9
23
68
22
56
4
25
2
68
1.21
50981061--50981104
9
4.9
9
100
0
88
31
0
11
56
1.35
50981822--50981862
21
1.9
21
90
5
64
26
0
7
65
1.18
50981948--50982500
86
6.4
86
90
2
768
33
12
9
45
1.73
50981948--50982500
174
3.2
173
89
1
815
33
12
9
45
1.73
50982608--50982652
22
2.0
23
86
4
65
64
4
0
31
1.13
50984261--50984347
11
8.2
10
87
8
111
27
27
0
44
1.54
50984344--50984400
29
2.0
29
89
0
87
43
1
1
52
1.21
50986185--50986227
18
2.4
18
92
0
68
16
27
11
44
1.82
50986468--50986532
21
3.0
22
78
13
64
35
41
15
7
1.76
50986778--50986898
61
2.0
61
88
0
179
31
9
6
52
1.58
50987538--50987588
7
7.3
7
81
0
66
47
33
0
19
1.50
50989604--50989897
125
2.3
126
90
1
448
28
20
19
31
1.97
50989923--50989958
7
5.1
7
93
0
63
44
44
0
11
1.39
50989950--50990127
96
1.9
95
84
8
245
46
15
2
35
1.61
50989978--50990150
95
1.8
96
82
6
226
47
16
2
32
1.62
50990181--50990231
7
7.0
7
78
12
50
49
37
0
13
1.43
50991587--50991693
29
3.6
29
85
12
112
34
2
0
61
1.17
50991655--50991694
21
1.9
21
94
0
71
35
2
0
62
1.09
50991646--50991693
12
4.3
12
72
17
50
37
2
0
60
1.09
50998380--50998421
21
2.0
21
100
0
84
38
38
4
19
1.73
50998499--50998549
23
2.2
22
80
16
59
41
3
1
52
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50998749--50998801
17
3.2
17
82
10
65
64
3
0
32
1.12
51002200--51002296
50
1.9
50
87
0
140
32
7
17
42
1.77
51005860--51005911
26
2.0
26
96
0
95
30
26
17
25
1.97
51005917--51005990
25
3.0
25
85
0
85
32
20
25
21
1.97
51005948--51006002
25
2.2
24
90
3
83
32
18
27
21
1.96
51009731--51009761
16
1.9
16
93
0
53
32
3
0
64
1.09
51015347--51015429
23
3.5
24
86
4
125
33
19
15
31
1.93
51016177--51016309
40
3.3
40
81
5
151
33
27
15
24
1.95
51042718--51042743
2
13.0
2
100
0
52
0
0
50
50
1.00
51055180--51055248
34
2.0
34
97
0
129
30
33
8
27
1.87
51058651--51058725
39
1.9
39
97
0
141
29
10
14
45
1.79
51067271--51067295
4
6.2
4
100
0
50
24
0
0
76
0.80
51074992--51075027
14
2.6
15
83
16
51
72
0
25
2
0.98
51075128--51075390
106
2.5
103
83
7
348
28
1
12
57
1.43
51079168--51079226
21
2.7
22
76
2
57
54
8
5
32
1.53
51079459--51080081
321
2.0
316
96
2
1149
49
13
4
31
1.63
51080631--51080729
31
3.3
29
78
8
92
47
15
14
23
1.81
51080750--51081045
112
2.6
111
85
4
407
60
14
0
23
1.39
51111669--51111986
146
2.1
146
82
5
368
30
0
14
54
1.46
51112471--51112526
22
2.5
23
82
2
69
51
1
1
44
1.22
51112502--51112541
16
2.5
16
91
0
62
47
2
7
42
1.45
51112544--51112663
59
2.1
59
90
1
197
41
5
9
44
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51115348--51115453
42
2.5
43
86
6
155
19
3
45
31
1.68
51127788--51127815
14
2.0
14
100
0
56
35
7
21
35
1.81
51142891--51142932
9
5.0
8
83
16
50
61
0
2
35
1.09
51142891--51142932
17
2.5
17
85
11
59
61
0
2
35
1.09
51143449--51143491
21
2.0
21
86
0
59
51
0
6
41
1.29
51150775--51150805
6
5.2
6
100
0
62
48
51
0
0
1.00
51153941--51153969
15
1.9
15
100
0
58
20
34
0
44
1.52
51156017--51156110
31
3.1
31
80
3
102
39
17
17
26
1.91
51156431--51156518
44
2.0
44
93
0
149
46
7
9
36
1.65
51156759--51156821
9
6.8
9
74
13
56
26
4
0
68
1.10
51156764--51156827
18
3.4
19
79
12
62
28
3
0
68
1.04
51156770--51156804
11
3.2
11
91
0
52
25
0
0
74
0.82
51156770--51156827
9
6.1
10
77
18
54
27
1
0
70
0.97
51159758--51159798
16
2.4
17
88
8
57
70
0
2
26
0.99
51163470--51163798
51
6.5
51
92
1
502
29
24
14
31
1.94
51163769--51163798
7
4.3
7
95
0
51
33
30
0
36
1.58
51165110--51165268
73
2.2
73
86
1
221
30
22
23
23
1.99
51165162--51165832
114
5.9
114
88
1
972
26
20
26
26
1.99
51165735--51165904
72
2.4
72
94
0
295
26
22
24
25
2.00
51165835--51166026
102
1.9
102
92
0
321
27
23
24
24
2.00
51165988--51166066
41
1.9
41
94
0
140
21
17
31
29
1.96
51166193--51166237
21
2.1
22
84
12
58
33
0
28
37
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51166526--51166603
14
5.5
15
75
13
67
24
0
38
37
1.56
51166533--51166573
21
2.0
20
85
4
55
19
0
41
39
1.52
51166526--51166598
28
2.6
29
82
2
85
23
0
41
35
1.55
51166543--51166616
22
3.4
22
81
1
78
24
1
39
35
1.64
51169832--51169866
4
8.8
4
100
0
70
25
0
22
51
1.48
51170557--51170669
43
2.6
43
92
0
190
20
16
30
31
1.95
51184571--51184603
13
2.4
14
85
5
50
27
6
0
66
1.15
51192398--51192448
24
2.1
24
88
0
75
39
11
1
47
1.52
51192642--51192688
20
2.3
20
85
3
58
23
17
23
36
1.95
51192652--51192691
20
2.0
20
100
0
80
15
15
25
45
1.84
51193678--51193705
5
5.6
5
100
0
56
39
21
17
21
1.93
51198065--51198364
96
3.1
97
85
2
381
39
2
16
41
1.62
51198407--51198697
125
2.3
125
93
0
492
32
17
21
28
1.96
51200828--51201033
61
3.5
61
75
15
223
46
5
4
43
1.49
51200998--51201070
34
2.1
34
97
0
137
50
5
4
39
1.44
51201490--51201532
18
2.4
18
88
0
59
44
9
27
18
1.80
51201625--51201681
30
1.9
30
85
0
78
15
12
38
33
1.85
51202179--51202203
7
3.6
7
100
0
50
60
12
0
28
1.32
51203342--51203414
11
6.6
11
81
6
94
47
0
30
21
1.51
51203342--51203414
23
3.3
21
88
9
110
47
0
30
21
1.51
51207697--51207721
4
6.2
4
100
0
50
76
0
0
24
0.80
51216811--51216837
2
13.5
2
100
0
54
51
48
0
0
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51220921--51220959
20
2.0
20
85
14
55
66
5
25
2
1.25
51221820--51221857
18
2.1
18
95
0
67
47
13
5
34
1.65
51221828--51221863
18
2.0
18
88
0
54
52
19
2
25
1.59
51222457--51222738
142
2.0
142
95
0
501
40
4
17
37
1.71
51222973--51223044
8
9.0
8
78
14
69
37
0
1
61
1.05
51222973--51223045
5
13.8
5
78
16
76
38
0
1
60
1.06
51223243--51223283
13
3.2
13
86
3
57
70
0
29
0
0.87
51224479--51224561
39
2.2
39
86
6
116
19
20
21
38
1.93
51224545--51224571
6
4.5
6
100
0
54
18
18
14
48
1.82
51224506--51224663
51
3.2
51
82
10
211
20
17
19
42
1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313