Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  113  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36811434--36811507
29
2.6
29
86
4
105
35
25
13
25
1.93
36815967--36816016
26
1.9
26
95
0
91
36
14
32
18
1.90
36817851--36817891
10
4.2
10
84
9
50
14
0
2
82
0.76
36818098--36818351
45
5.7
45
76
3
244
31
20
22
26
1.98
36818059--36818384
89
3.6
89
77
5
316
30
19
21
27
1.98
36818059--36818595
179
3.0
175
80
7
505
32
20
18
27
1.96
36818144--36818589
89
5.0
87
69
11
244
33
21
17
27
1.96
36818979--36819012
14
2.4
14
90
0
50
14
0
2
82
0.79
36819117--36819156
20
2.0
20
95
0
71
17
15
7
60
1.57
36822757--36822889
46
2.9
46
87
0
185
40
16
22
20
1.91
36823170--36823202
17
2.0
17
88
5
50
51
0
12
36
1.39
36824352--36824390
7
5.6
7
93
0
51
30
23
0
46
1.53
36833509--36833549
21
2.0
21
90
0
64
29
21
29
19
1.98
36857563--36857593
2
15.5
2
100
0
62
0
48
0
51
1.00
36859215--36859248
8
4.5
8
96
3
54
64
5
0
29
1.17
36859204--36859259
24
2.3
24
77
17
62
66
3
1
28
1.19
36859208--36859255
16
3.1
15
84
6
60
64
4
2
29
1.23
36859272--36859314
18
2.4
18
80
7
52
74
4
4
16
1.16
36859410--36859474
25
2.8
24
83
6
80
52
6
7
33
1.55
36859499--36859626
23
5.5
24
70
12
79
57
2
4
35
1.33
36860108--36860182
30
2.5
30
91
0
123
22
2
50
24
1.62
36861678--36861708
9
3.4
9
100
0
62
61
0
9
29
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36861669--36861724
18
3.0
19
79
10
71
64
0
7
28
1.20
36861772--36861852
22
3.7
21
80
11
92
62
4
3
28
1.33
36861772--36861850
23
3.6
22
80
11
83
63
5
3
27
1.33
36861772--36861852
21
3.7
21
80
16
94
62
4
3
28
1.33
36866274--36866332
31
1.9
31
86
6
84
35
1
3
59
1.24
36866347--36866387
18
2.3
18
86
0
55
26
2
7
63
1.33
36868005--36868036
9
3.6
9
100
0
64
12
0
9
78
0.97
36868114--36868162
23
2.1
23
96
0
89
36
14
10
38
1.80
36875700--36875732
3
11.0
3
93
0
57
33
3
0
63
1.10
36879244--36879281
18
2.1
19
90
5
60
52
5
21
21
1.66
36886953--36886985
16
2.0
17
94
5
59
48
39
0
12
1.40
36892946--36892979
17
2.0
17
100
0
68
47
5
23
23
1.73
36893414--36893684
54
5.0
54
100
0
542
28
11
20
40
1.86
36913285--36913309
4
6.2
4
100
0
50
48
0
0
52
1.00
36915756--36915849
17
5.6
17
67
26
58
37
1
0
61
1.03
36917850--36917887
20
1.9
20
94
0
67
50
7
5
36
1.54
36927792--36927882
43
2.1
43
85
2
121
43
9
12
34
1.75
36931331--36931360
15
1.9
16
93
6
53
63
0
3
33
1.11
36932628--36932699
36
2.0
36
88
0
108
29
20
23
26
1.99
36935719--36935748
6
5.0
6
100
0
60
16
0
0
83
0.65
36935933--36935984
16
3.4
16
81
5
54
76
9
1
11
1.09
36937807--36937836
6
5.0
6
100
0
60
16
0
0
83
0.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36938021--36938072
16
3.4
16
81
5
54
76
9
1
11
1.09
36939495--36939527
15
2.1
16
88
5
50
15
3
3
78
0.99
36941058--36941114
29
2.0
27
83
6
69
15
5
3
75
1.12
36941598--36941926
110
3.0
110
91
0
532
31
16
19
33
1.94
36943675--36943716
19
2.2
19
87
8
59
66
2
0
30
1.04
36949239--36949995
379
2.0
379
97
0
1424
29
26
18
25
1.98
36951647--36951698
9
6.0
9
82
6
54
21
0
0
78
0.74
36951665--36951701
9
4.0
9
96
3
65
13
0
0
86
0.57
36951657--36951695
18
2.2
18
90
0
60
15
0
0
84
0.62
36953661--36953712
9
6.0
9
82
6
54
21
0
0
78
0.74
36953679--36953715
9
4.0
9
96
3
65
13
0
0
86
0.57
36953671--36953709
18
2.2
18
90
0
60
15
0
0
84
0.62
36957061--36957104
18
2.4
18
92
0
70
18
0
6
75
1.02
36957061--36957104
9
4.9
9
82
0
52
18
0
6
75
1.02
36959304--36959409
47
2.3
47
81
4
126
43
16
7
33
1.76
36962331--36962379
13
3.6
14
83
8
66
46
6
0
46
1.27
36963997--36964027
9
3.4
9
90
0
53
41
22
9
25
1.84
36964131--36964171
5
7.6
5
84
15
55
4
0
53
41
1.22
36964130--36964164
18
1.9
18
100
0
70
8
0
51
40
1.33
36964129--36964204
28
2.7
28
81
6
73
14
1
44
39
1.53
36964707--36964788
30
2.7
31
85
5
89
54
7
2
35
1.41
36964723--36964788
30
2.2
30
91
2
105
59
4
3
33
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36969265--36969294
14
2.1
14
100
0
60
70
6
0
23
1.11
36977914--36977949
15
2.4
16
86
13
51
27
0
0
72
0.85
36978922--36978977
28
2.0
28
82
6
69
25
35
12
26
1.91
36980699--36980731
6
5.8
6
86
13
52
84
0
15
0
0.61
36980699--36980731
17
1.9
17
93
0
57
84
0
15
0
0.61
36980699--36980731
11
3.0
11
95
0
57
84
0
15
0
0.61
36983023--36983082
30
2.0
31
86
3
86
40
0
40
20
1.52
36983297--36983333
9
4.1
9
85
0
56
32
10
10
45
1.74
36985673--36985712
21
1.9
21
84
0
53
45
20
2
32
1.64
36986466--36986505
20
2.0
20
90
0
62
27
10
12
50
1.72
36986451--36986517
34
1.9
35
90
3
109
31
8
13
46
1.74
36986445--36986521
14
5.0
15
71
20
52
33
9
14
42
1.77
36990722--36991356
314
2.0
314
100
0
1270
32
12
15
39
1.85
36996762--36996830
21
3.2
21
68
12
50
34
1
4
59
1.26
36999998--37000194
102
1.9
102
97
0
376
33
16
24
25
1.96
37000433--37000523
44
2.1
44
85
0
119
28
14
12
45
1.80
37003494--37003555
31
2.0
31
90
0
97
46
4
16
32
1.68
37003810--37003874
34
2.0
33
87
6
96
40
6
3
50
1.43
37011972--37012013
18
2.4
17
81
18
50
66
0
16
16
1.25
37019126--37019854
364
2.0
364
99
0
1431
34
17
19
28
1.94
37020036--37020087
19
2.8
18
85
5
68
23
5
0
71
1.07
37022872--37022927
25
2.2
25
96
0
103
19
26
10
42
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37025855--37025909
28
2.0
28
92
0
92
12
38
3
45
1.60
37029448--37029506
29
2.0
30
86
3
84
30
8
16
44
1.78
37036136--37036176
19
2.1
19
86
4
55
51
0
7
41
1.30
37040593--37040621
2
14.5
2
100
0
58
48
0
0
51
1.00
37046724--37046776
23
2.3
23
96
0
97
16
33
16
32
1.92
37051056--37051240
46
4.0
46
81
0
190
28
15
24
31
1.95
37051063--37051240
92
1.9
92
83
2
232
28
14
24
32
1.95
37055338--37055368
16
1.9
16
93
0
53
6
19
0
74
1.03
37056242--37056280
9
4.6
9
87
9
55
35
0
0
64
0.94
37057565--37057629
21
3.0
21
70
18
62
33
3
1
61
1.21
37062460--37062527
32
2.1
33
81
8
77
30
5
10
52
1.59
37063110--37063138
2
15.0
2
92
7
51
51
0
0
48
1.00
37064082--37064126
20
2.3
20
84
3
56
57
2
2
37
1.23
37064078--37064156
26
2.9
26
79
7
86
55
1
1
41
1.16
37064097--37064158
27
2.3
27
83
8
83
56
0
0
43
0.99
37064112--37064168
26
2.2
26
87
3
80
56
1
0
42
1.10
37069668--37069743
9
8.4
9
79
5
82
40
18
10
30
1.84
37069668--37069743
27
2.8
27
89
0
116
40
18
10
30
1.84
37069840--37069883
18
2.4
18
88
0
61
13
2
43
40
1.57
37074016--37074124
42
2.6
43
85
1
139
28
17
21
33
1.96
37074677--37074837
48
3.3
49
86
4
220
24
13
16
45
1.83
37077573--37077618
21
2.1
21
92
8
74
63
0
0
36
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37089101--37089187
28
3.1
27
76
17
88
26
6
1
65
1.25
37091946--37091983
17
2.3
17
86
4
51
36
0
2
60
1.11
37095448--37095526
10
7.6
10
77
11
61
36
2
0
60
1.10
37095448--37095526
21
3.8
21
74
11
65
36
2
0
60
1.10
37095422--37095506
30
2.8
30
83
5
91
38
4
0
56
1.20
37100597--37100627
2
15.5
2
100
0
62
0
0
48
51
1.00
37107311--37107346
14
2.6
14
100
0
72
22
33
30
13
1.93
37110536--37110612
16
4.5
17
73
15
61
35
29
16
18
1.93
37116451--37116484
12
2.8
12
90
0
59
58
0
8
32
1.29
37140986--37141269
59
4.7
58
67
18
150
43
2
4
49
1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313