genome.fa.s26.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  97  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32244351--32244467	33	3.5	33	76	0	117	30	19	29	20	1.97
32244351--32244479	66	2.0	66	80	6	145	31	19	27	20	1.97
32244351--32244486	33	4.1	33	77	3	103	32	18	27	22	1.97
32245401--32245449	25	2.0	25	95	0	89	12	28	22	36	1.90
32250093--32250122	14	2.1	15	93	6	53	76	0	6	16	0.99
32251868--32251913	22	2.0	24	91	8	78	8	6	4	80	1.01
32251831--32251897	22	3.4	18	74	11	53	17	4	2	74	1.11
32251908--32251969	21	2.9	21	85	9	72	24	6	3	66	1.30
32252034--32252074	20	2.0	20	85	0	55	24	7	0	68	1.15
32252043--32252095	20	2.7	20	82	5	63	20	3	1	73	1.08
32263809--32264040	44	5.2	44	80	4	252	33	15	21	29	1.95
32263803--32264007	89	2.3	89	91	3	324	32	15	20	30	1.94
32263978--32264226	124	2.0	124	97	0	471	28	16	23	32	1.96
32264192--32264401	44	4.6	44	71	15	156	31	20	18	30	1.96
32264102--32264306	94	2.2	89	79	5	205	28	18	21	31	1.97
32264605--32264634	15	2.1	15	93	6	53	83	16	0	0	0.65
32265945--32265983	18	2.2	18	85	0	51	20	7	2	69	1.26
32266023--32266073	22	2.2	24	86	10	72	25	5	0	68	1.12
32266140--32266180	20	2.0	20	85	0	55	24	7	0	68	1.15
32266149--32266201	20	2.7	20	82	5	63	20	3	1	73	1.08
32268459--32268801	186	1.8	186	89	1	535	36	19	11	32	1.87
32271545--32271625	26	3.2	26	94	1	137	30	6	25	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32273112--32273161	26	1.9	26	84	8	66	38	22	16	24	1.93
32276236--32276278	19	2.3	19	100	0	86	27	34	4	32	1.78
32278434--32279564	564	2.0	563	90	0	1796	30	30	15	24	1.95
32280779--32280813	17	2.1	17	88	0	52	20	20	14	45	1.85
32284682--32284721	20	2.0	20	85	9	55	75	0	15	10	1.05
32285779--32285824	23	2.0	23	91	0	74	36	19	6	36	1.78
32286093--32286234	70	2.0	69	84	1	185	33	16	23	27	1.95
32288177--32288214	10	3.8	10	89	0	58	26	0	5	68	1.11
32288209--32288273	20	3.3	19	73	20	53	30	0	4	64	1.14
32288942--32288984	21	2.0	21	90	0	68	23	11	11	53	1.69
32295552--32295586	16	2.2	16	100	0	70	37	5	14	42	1.69
32301202--32301262	30	2.0	31	84	6	81	52	1	0	45	1.10
32309776--32309808	17	2.0	16	94	5	57	42	15	0	42	1.46
32310095--32310225	46	2.8	46	87	2	174	20	25	13	40	1.89
32313476--32313628	33	4.7	32	76	5	119	28	24	13	33	1.94
32313470--32313631	66	2.5	66	77	3	175	27	24	13	33	1.93
32313630--32313702	38	1.9	38	91	0	119	27	21	13	36	1.92
32313600--32313783	33	5.5	33	72	12	140	28	22	12	35	1.91
32313776--32313844	29	2.4	29	95	0	120	26	30	10	33	1.89
32314507--32314547	20	2.0	21	85	4	57	39	17	0	43	1.49
32314760--32314810	22	2.3	21	75	15	50	33	11	0	54	1.37
32315000--32315025	13	2.0	13	100	0	52	38	7	7	46	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32319400--32319442	15	2.9	15	79	6	52	62	4	0	32	1.15
32320017--32320047	12	2.6	12	94	0	53	0	25	0	74	0.82
32321838--32321881	22	2.0	22	86	0	61	13	15	13	56	1.67
32324195--32324431	33	7.1	33	70	11	124	29	23	14	32	1.94
32324452--32324518	29	2.3	29	89	0	98	29	23	8	37	1.86
32327979--32328030	22	2.3	22	83	9	70	59	3	0	36	1.16
32328097--32328150	24	2.2	25	80	12	67	57	0	1	40	1.09
32328577--32328615	5	7.2	6	91	8	50	69	12	17	0	1.19
32332008--32332040	5	6.6	5	92	0	57	39	3	0	57	1.14
32332138--32332187	17	2.8	18	78	6	57	56	6	0	38	1.24
32332144--32332203	31	1.9	30	83	16	77	51	6	1	40	1.38
32334297--32334335	19	2.1	19	85	0	51	46	0	2	51	1.14
32344844--32344877	14	2.4	14	85	0	50	73	0	2	23	0.97
32346528--32346587	30	2.0	30	93	0	102	30	1	11	56	1.45
32347249--32347273	7	3.6	7	100	0	50	44	0	0	56	0.99
32348188--32348319	60	2.2	60	86	0	192	46	3	6	43	1.45
32354027--32354088	29	2.1	29	81	0	70	46	20	19	12	1.83
32359011--32359043	16	2.1	16	94	0	57	69	9	0	21	1.15
32359164--32359219	21	2.7	20	74	20	51	64	5	5	25	1.36
32364730--32364760	14	2.2	14	100	0	62	41	6	16	35	1.74
32365941--32366114	58	2.9	58	79	9	174	29	14	15	40	1.87
32382145--32382260	56	2.1	56	88	0	169	29	38	10	21	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32392922--32392971	21	2.4	21	82	0	55	72	0	0	28	0.86
32400493--32400574	31	2.6	31	80	0	101	41	7	13	37	1.72
32400777--32400841	23	2.8	24	70	25	59	46	1	1	50	1.20
32402019--32402082	31	2.0	32	96	3	121	34	4	0	60	1.17
32403300--32403340	20	2.2	20	86	8	59	36	2	0	60	1.10
32405305--32405450	59	2.4	59	90	2	229	34	4	8	53	1.50
32406977--32407019	18	2.4	17	81	11	50	60	2	4	32	1.30
32407669--32407694	3	8.7	3	100	0	52	65	0	0	34	0.93
32407703--32407736	15	2.3	15	90	5	52	64	0	5	29	1.17
32408849--32408930	23	3.6	23	85	4	112	25	0	32	41	1.56
32409966--32410018	11	4.9	11	83	2	54	30	3	45	20	1.69
32414064--32414120	18	3.2	18	76	0	69	35	15	21	28	1.94
32414652--32414693	11	3.9	11	84	3	50	30	2	47	19	1.62
32417980--32418202	104	2.1	105	83	1	277	21	30	21	26	1.99
32419461--32419522	31	2.0	31	96	0	115	43	12	14	29	1.83
32422599--32422634	18	1.9	19	88	5	56	22	2	0	75	0.94
32422598--32422653	23	2.5	21	75	16	58	19	7	3	69	1.27
32423578--32423622	20	2.3	19	82	17	56	8	17	17	55	1.67
32433779--32433811	14	2.4	14	94	0	57	33	3	36	27	1.72
32434261--32434299	15	2.6	15	100	0	78	38	20	7	33	1.81
32434483--32435020	44	11.7	44	73	11	255	33	16	20	30	1.94
32434666--32434973	89	3.4	88	74	7	276	32	15	21	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32436632--32436680	3	16.0	3	79	12	55	34	2	0	63	1.06
32438701--32438754	24	2.2	24	100	0	108	44	11	3	40	1.58
32440417--32440456	18	2.1	18	86	9	53	25	0	10	65	1.24
32441147--32441256	38	2.9	38	77	9	116	50	3	1	44	1.30
32441168--32441256	39	2.4	37	79	7	106	50	3	1	44	1.25
32447944--32448807	44	19.0	44	69	11	355	30	18	16	34	1.94
32448043--32448807	89	8.3	96	73	10	428	29	19	16	33	1.94
32448526--32448807	130	2.2	130	85	3	379	31	19	17	31	1.95
32456935--32456989	19	2.8	20	83	5	69	45	9	18	27	1.79
32457243--32457438	97	2.0	97	100	0	392	24	18	19	37	1.94
32457631--32457657	13	2.1	13	100	0	54	14	33	37	14	1.88
32458776--32458806	3	10.0	3	93	6	53	32	0	0	67	0.91
32470105--32470261	51	3.1	50	88	3	235	33	15	22	28	1.94
32475466--32475499	17	1.9	18	88	5	52	32	5	0	61	1.20
32475533--32475565	17	1.9	18	88	11	52	45	3	0	51	1.16
32476972--32477029	10	5.6	10	77	18	57	36	0	1	62	1.06
32476972--32477026	15	3.4	16	85	12	69	36	0	1	61	1.06
32476971--32477027	19	2.9	19	75	12	53	36	0	1	61	1.07
32488324--32488881	206	2.7	206	89	0	848	31	18	22	28	1.97
32489100--32489310	106	2.0	106	96	0	386	36	23	12	26	1.91
32489443--32490241	397	2.0	399	93	1	1361	39	12	15	32	1.84
32490828--32490885	10	5.6	10	77	18	57	36	0	1	62	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32490828--32490882	15	3.4	16	85	12	69	36	0	1	61	1.06
32490827--32490883	19	2.9	19	75	12	53	36	0	1	61	1.07
32492191--32492215	13	1.9	13	100	0	50	28	16	8	48	1.74
32493483--32493527	20	2.4	19	82	17	58	33	11	2	53	1.49
32498003--32498032	1	30.0	1	100	0	60	100	0	0	0	0.00
32507250--32507280	15	2.1	15	100	0	62	6	38	0	54	1.26
32507324--32507373	15	3.5	14	79	15	50	42	8	24	26	1.82
32507394--32507423	14	2.1	14	100	0	60	46	0	6	46	1.29
32512570--32513628	205	5.2	205	92	0	1733	29	21	17	31	1.96
32521516--32521546	15	2.1	15	100	0	62	6	38	0	54	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313