genome.fa.s26.2.7.7.80.10.50.1000.210.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  210  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64605800--64607748	45	41.2	45	75	17	1186	46	22	1	29	1.60
64607774--64607997	116	1.9	116	91	0	367	38	8	9	43	1.67
64607973--64608014	17	2.4	18	80	4	50	42	9	2	45	1.49
64610973--64611325	126	2.8	126	87	3	523	33	21	15	29	1.94
64612801--64612826	6	4.3	6	100	0	52	0	15	34	50	1.45
64618886--64618961	32	2.4	32	84	0	89	25	23	5	46	1.73
64623398--64623473	32	2.4	32	84	0	89	25	23	5	46	1.73
64626700--64626964	40	6.7	40	88	4	333	25	26	21	26	2.00
64626700--64626964	119	2.2	122	84	6	337	25	26	21	26	2.00
64629229--64629264	18	2.0	18	88	0	54	47	8	2	41	1.48
64629741--64629891	27	5.6	27	81	4	169	26	15	28	29	1.96
64629742--64629891	82	1.8	81	88	4	230	26	15	28	30	1.96
64629741--64629891	55	2.8	53	80	4	167	26	15	28	29	1.96
64630235--64630579	171	2.0	171	98	0	672	18	17	23	39	1.92
64630687--64630896	105	2.0	105	99	0	411	30	17	27	25	1.97
64639949--64640001	20	2.7	20	77	8	63	33	15	32	18	1.92
64646490--64646523	11	3.0	11	86	4	50	70	5	5	17	1.28
64647684--64647756	38	1.9	38	97	0	137	71	1	17	9	1.20
64647672--64647726	26	2.0	28	86	6	78	69	1	18	10	1.27
64647680--64647776	38	2.8	33	79	15	90	71	2	17	9	1.22
64647698--64647793	43	2.2	43	80	5	104	69	2	19	8	1.24
64663703--64664258	47	11.6	47	94	3	889	29	28	8	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64671765--64671984	40	5.7	40	78	11	208	24	21	26	26	2.00
64671867--64672017	40	3.8	40	84	4	157	27	19	25	27	1.99
64671868--64672017	80	1.9	79	82	6	187	27	19	26	27	1.99
64677602--64678098	49	10.3	49	91	3	767	31	8	29	30	1.86
64683374--64683493	56	2.1	56	98	0	231	45	9	23	22	1.81
64685083--64685179	27	3.6	27	87	1	133	30	14	23	30	1.94
64685295--64685353	24	2.5	24	94	5	102	20	8	25	45	1.79
64685414--64685515	27	3.9	26	77	6	89	14	21	27	36	1.93
64685523--64685649	32	4.0	32	83	11	161	21	21	18	38	1.93
64696139--64696174	10	3.4	10	92	7	54	80	0	19	0	0.71
64696132--64696173	13	2.9	14	82	10	50	83	0	16	0	0.65
64697570--64697754	44	4.2	44	67	10	108	31	17	21	28	1.96
64697393--64699143	132	13.3	132	88	0	2560	30	18	24	25	1.98
64697389--64699143	263	6.7	264	89	0	2568	30	19	24	25	1.98
64697393--64699143	395	4.4	396	89	0	2569	30	18	24	25	1.98
64699673--64699716	19	2.3	19	92	0	79	40	9	13	36	1.76
64699931--64699969	19	2.0	21	85	10	55	15	10	5	69	1.34
64700190--64700232	3	14.3	3	80	9	52	32	2	0	65	1.06
64700174--64700211	15	2.6	15	83	4	51	26	0	2	71	1.00
64703266--64703299	9	4.0	9	88	11	54	44	0	0	55	0.99
64705375--64705448	22	3.2	22	67	10	67	51	6	12	29	1.65
64705389--64705467	25	3.3	24	68	10	72	58	3	8	29	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64705369--64705468	47	2.1	47	96	0	182	55	6	10	29	1.57
64709368--64709737	186	2.0	186	91	1	598	38	16	9	35	1.82
64709862--64709920	30	2.0	30	96	0	109	42	8	11	37	1.72
64713541--64713590	17	2.9	17	90	0	82	26	26	6	42	1.78
64717603--64717699	27	3.6	27	84	1	124	32	16	20	29	1.95
64717765--64717859	24	4.0	24	87	0	127	26	7	23	43	1.80
64717764--64717878	24	4.8	24	84	0	122	24	7	22	45	1.79
64717816--64717898	24	3.5	24	81	6	96	24	8	21	45	1.79
64717961--64718025	27	2.4	27	83	14	82	18	23	24	33	1.96
64718068--64718206	32	4.4	32	83	4	156	21	21	18	38	1.94
64719507--64719538	16	2.1	16	88	11	50	50	9	0	40	1.35
64719883--64719937	17	3.2	16	75	10	56	54	3	0	41	1.18
64719257--64720062	399	2.0	399	95	1	1438	44	8	8	39	1.64
64722294--64722348	3	18.3	3	81	7	67	34	1	1	61	1.17
64735291--64735396	44	2.4	44	82	3	115	30	22	20	26	1.98
64736367--64736401	7	5.0	7	85	0	52	20	0	51	28	1.47
64736363--64736401	14	2.8	14	88	0	60	23	0	46	30	1.53
64736339--64736400	21	2.9	22	88	4	83	22	0	43	33	1.54
64736419--64736466	7	6.7	7	83	4	51	22	0	37	39	1.55
64736370--64736465	50	1.9	50	80	4	113	25	0	35	39	1.56
64740224--64740331	39	2.8	40	80	12	125	35	20	23	21	1.96
64740393--64740470	41	1.9	41	86	5	113	29	20	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64740436--64740675	41	5.9	41	83	4	272	18	20	32	29	1.96
64740455--64740676	81	2.7	81	85	2	300	18	21	32	27	1.96
64740388--64740676	122	2.3	123	83	2	357	20	20	30	28	1.97
64740640--64740716	40	1.9	41	86	2	111	25	22	18	33	1.96
64741768--64741802	7	5.0	7	85	0	52	20	0	51	28	1.47
64741764--64741802	14	2.8	14	88	0	60	23	0	46	30	1.53
64741740--64741801	21	2.9	22	88	4	83	22	0	43	33	1.54
64741820--64741867	7	6.7	7	83	4	51	22	0	37	39	1.55
64741771--64741866	50	1.9	50	80	4	113	25	0	35	39	1.56
64744660--64744750	11	7.6	11	67	24	51	24	30	0	45	1.54
64744660--64744715	22	2.5	22	88	2	76	25	32	0	42	1.55
64744682--64744800	51	2.3	50	84	7	150	28	24	0	47	1.52
64745915--64745939	7	3.6	7	100	0	50	28	0	12	60	1.32
64746591--64746625	18	1.9	18	94	0	61	25	31	8	34	1.86
64747027--64747138	25	4.7	25	69	16	103	42	0	13	42	1.50
64747146--64747176	13	2.4	13	94	0	53	48	25	0	25	1.52
64747148--64747275	48	2.9	42	81	15	159	47	26	0	25	1.52
64747169--64747318	48	3.1	48	92	1	246	46	30	0	23	1.52
64747258--64747345	12	7.2	12	71	18	58	42	37	0	20	1.52
64747282--64747316	13	2.7	13	95	0	61	51	28	0	20	1.47
64747259--64747478	61	3.7	58	85	8	277	45	30	0	24	1.53
64747309--64747344	11	3.2	11	84	7	54	36	44	0	19	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64747309--64747341	6	5.7	6	85	7	50	33	48	0	18	1.48
64747309--64747344	17	2.1	17	89	0	54	36	44	0	19	1.51
64747347--64747449	13	7.2	13	73	18	66	49	26	0	24	1.50
64747503--64747528	12	2.2	12	100	0	52	46	38	0	15	1.46
64747448--64747584	68	2.0	68	94	2	240	46	25	0	27	1.53
64747438--64747561	35	3.5	38	76	20	149	47	26	0	25	1.52
64747434--64747576	33	4.4	32	85	10	195	46	25	0	27	1.53
64748299--64748652	126	2.8	126	93	0	591	33	22	15	27	1.95
64749083--64749134	11	4.7	10	78	19	50	0	13	1	84	0.70
64749093--64749132	8	4.9	8	84	3	53	0	17	0	82	0.67
64749091--64749134	13	3.6	11	80	19	52	0	15	0	84	0.63
64749082--64749132	26	2.0	26	88	0	75	0	15	1	82	0.76
64749563--64749601	19	2.1	19	90	9	62	0	43	0	56	0.99
64749574--64749644	37	1.9	36	88	8	108	0	29	0	70	0.88
64749570--64749659	37	2.4	37	77	17	105	0	32	0	67	0.91
64750238--64750337	30	3.4	30	81	8	107	44	4	18	34	1.68
64750649--64751349	75	9.3	74	84	5	796	33	19	17	28	1.95
64750649--64751344	150	4.6	149	86	3	883	33	19	17	29	1.95
64760662--64760687	9	2.9	9	100	0	52	34	0	19	46	1.50
64761148--64761359	17	12.4	17	74	17	174	46	10	10	32	1.73
64761147--64761357	18	12.3	18	75	18	168	46	10	10	32	1.72
64761097--64761359	36	7.1	37	77	13	242	45	10	11	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64761192--64761281	43	2.1	44	87	6	130	54	13	10	22	1.68
64761154--64761317	79	2.0	81	88	4	244	50	11	10	28	1.71
64761776--64761817	15	2.6	17	82	10	54	0	19	0	80	0.70
64762167--64762235	7	9.3	7	85	7	66	7	14	0	78	0.96
64762167--64762235	15	4.6	14	80	8	66	7	14	0	78	0.96
64762356--64762401	19	2.4	20	79	17	53	2	28	0	69	1.00
64762363--64762401	19	2.1	19	86	13	55	2	28	0	69	1.02
64767288--64767409	23	5.3	23	87	0	190	30	26	21	22	1.99
64767288--64767409	46	2.7	46	96	0	217	30	26	21	22	1.99
64791565--64791615	23	2.3	23	89	3	77	39	21	5	33	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313