Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  140  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45034384--45034551
22
7.9
22
65
25
76
46
11
2
39
1.55
45034389--45034591
65
3.2
65
93
3
335
46
12
2
38
1.57
45034411--45035038
9
72.3
9
66
20
125
44
14
2
38
1.58
45034480--45034736
34
7.2
34
71
20
184
44
11
2
41
1.53
45034724--45034968
16
14.8
16
70
16
103
43
17
2
36
1.61
45034724--45034948
25
9.1
25
63
19
80
43
17
1
36
1.60
45034790--45035026
98
2.4
98
98
0
456
45
17
2
34
1.62
45034972--45035027
25
2.2
25
84
6
69
46
16
1
35
1.57
45035006--45035038
16
2.1
16
94
0
57
51
18
0
30
1.46
45040490--45040636
66
2.2
66
85
4
190
40
18
28
12
1.88
45040607--45040698
21
4.4
21
85
0
94
35
17
41
5
1.72
45041056--45041561
43
11.8
43
75
3
419
25
18
29
26
1.98
45041036--45041437
86
4.7
86
93
2
639
25
17
29
27
1.98
45041624--45041666
22
2.0
22
95
0
77
41
27
20
9
1.83
45042707--45042800
37
2.5
35
79
14
91
43
2
23
30
1.65
45048982--45049131
74
2.0
74
98
0
291
27
24
20
28
1.99
45058185--45058313
64
2.0
64
98
0
249
36
17
25
20
1.94
45058856--45058993
44
3.2
44
62
15
115
36
22
28
12
1.90
45058837--45059011
86
2.0
86
98
0
341
38
20
29
11
1.88
45066972--45067012
18
2.3
18
84
15
59
65
7
0
26
1.18
45070919--45070962
23
1.9
23
90
0
70
61
4
2
31
1.28
45070923--45070965
11
3.8
11
80
17
52
65
2
2
30
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45072462--45072489
14
2.0
14
100
0
56
50
0
0
50
1.00
45072500--45072533
16
2.1
16
88
0
50
55
5
0
38
1.24
45074400--45074424
13
1.9
13
100
0
50
32
8
20
40
1.81
45082131--45082160
4
7.5
4
100
0
60
50
23
0
26
1.50
45086299--45086476
77
2.4
77
77
13
181
29
18
23
28
1.98
45086472--45087002
229
2.3
229
78
7
519
31
19
22
26
1.98
45086451--45087008
115
4.9
114
72
11
401
30
19
22
27
1.98
45087068--45087106
21
1.9
20
89
5
60
20
0
35
43
1.52
45087089--45087113
7
3.6
7
100
0
50
24
0
32
44
1.54
45088591--45088949
178
2.0
178
91
3
580
37
15
17
29
1.91
45089134--45089231
35
2.8
36
87
3
144
29
13
15
41
1.85
45095415--45095452
20
2.0
20
94
5
69
10
2
2
84
0.83
45103271--45103313
22
2.0
22
85
0
59
65
16
0
18
1.28
45118517--45118572
21
2.8
20
82
15
64
39
1
0
58
1.08
45118520--45118591
10
7.0
10
75
10
65
40
1
0
58
1.07
45118521--45118599
21
3.8
21
73
9
63
39
1
1
58
1.14
45120810--45120892
41
2.0
41
95
0
148
32
9
9
48
1.69
45132462--45132489
14
2.0
14
100
0
56
21
7
28
42
1.79
45135071--45135107
14
2.6
14
100
0
74
27
8
5
59
1.48
45147639--45147679
21
1.9
22
90
5
66
39
9
12
39
1.76
45156639--45156730
37
2.5
37
87
0
121
20
17
19
42
1.89
45157091--45157236
49
3.0
50
78
3
154
44
11
10
33
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45160995--45161019
3
8.3
3
100
0
50
68
0
0
32
0.90
45161960--45162009
17
2.9
17
90
0
82
42
6
26
26
1.78
45165542--45165574
17
1.9
17
100
0
66
42
6
27
24
1.78
45167613--45167648
17
2.1
17
89
0
54
58
0
5
36
1.22
45177060--45177132
35
2.1
35
97
0
137
27
15
19
38
1.91
45179824--45179875
16
3.2
16
97
0
95
26
0
34
38
1.57
45180111--45180145
18
2.0
17
88
5
52
54
0
0
45
0.99
45180231--45180265
18
2.0
17
88
5
52
54
0
0
45
0.99
45180319--45180400
26
3.0
27
75
12
87
52
2
1
43
1.22
45183457--45183566
33
3.3
33
80
11
136
32
8
16
42
1.77
45183513--45183666
51
3.0
51
100
0
308
29
7
17
45
1.76
45184817--45184851
18
2.0
17
94
5
61
28
28
2
40
1.71
45186320--45186365
21
2.1
23
88
8
69
39
21
26
13
1.90
45190305--45190334
6
4.8
6
95
4
51
0
16
0
83
0.65
45191184--45191218
17
2.0
18
94
5
63
11
22
45
20
1.82
45192729--45192793
28
2.3
28
86
0
94
23
20
15
41
1.89
45192729--45192801
28
2.6
28
84
0
83
24
20
16
38
1.93
45194011--45194078
17
4.0
17
73
7
66
27
7
19
45
1.76
45194260--45194722
237
2.0
237
89
0
719
27
12
27
32
1.93
45205267--45205312
23
2.0
23
91
4
76
41
0
0
58
0.98
45205245--45205322
31
2.5
31
87
2
104
39
0
1
58
1.06
45208071--45208127
22
2.8
19
75
14
60
59
0
0
40
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45208085--45208126
11
3.8
11
87
9
59
59
0
0
40
0.97
45208078--45208131
11
5.1
10
84
6
54
62
0
0
37
0.95
45210090--45210149
30
2.0
30
93
0
102
56
13
3
26
1.52
45213852--45213877
4
6.5
4
100
0
52
0
26
0
73
0.84
45216124--45216180
28
2.0
28
96
0
105
52
3
24
19
1.61
45218867--45219066
45
4.5
44
75
8
136
35
25
14
25
1.93
45222956--45223086
50
2.6
51
89
7
198
19
34
19
26
1.96
45229043--45229111
35
2.0
34
97
0
120
24
11
28
33
1.90
45229928--45229996
31
2.3
31
89
2
104
46
14
7
31
1.72
45234687--45234727
2
20.5
2
100
0
82
0
0
48
51
1.00
45239749--45240085
108
3.1
108
88
6
489
41
13
15
28
1.86
45240388--45240912
107
5.0
106
81
8
594
31
16
14
38
1.88
45240388--45240915
214
2.5
209
85
8
691
31
16
14
38
1.88
45249978--45250015
18
2.1
18
100
0
76
26
47
15
10
1.78
45251858--45251895
19
2.0
19
89
0
58
28
2
2
65
1.19
45251875--45251935
24
2.6
22
82
12
61
26
6
0
67
1.15
45252792--45252820
3
9.7
3
100
0
58
65
0
0
34
0.93
45252795--45252840
9
5.1
9
86
0
56
56
0
0
43
0.99
45253214--45253255
11
3.6
11
81
12
57
35
0
4
59
1.19
45257766--45257870
33
3.2
33
76
8
99
45
6
28
19
1.75
45257791--45257889
33
3.0
33
80
0
99
47
9
28
15
1.75
45265396--45265438
14
3.0
14
79
3
50
4
13
6
74
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45279374--45279415
10
4.7
9
80
19
52
40
0
0
59
0.97
45282422--45282480
31
1.9
30
82
3
73
32
10
13
44
1.77
45288867--45288988
61
2.0
61
96
0
226
40
8
14
36
1.76
45288969--45289008
16
2.4
16
87
4
53
62
0
0
37
0.95
45292691--45292870
89
2.0
89
92
0
297
46
6
8
38
1.60
45294122--45294175
15
3.3
15
74
18
54
46
0
0
53
1.00
45294137--45294173
19
1.9
19
88
0
56
51
0
0
48
1.00
45294119--45294191
14
4.7
15
70
17
51
49
0
1
49
1.09
45297007--45297198
77
2.5
77
100
0
384
39
14
19
26
1.90
45307324--45307351
3
9.3
3
100
0
56
67
0
0
32
0.91
45315819--45315869
16
3.0
17
74
8
50
49
0
0
50
1.00
45317996--45318072
29
2.5
31
87
4
104
25
14
12
46
1.80
45330881--45330974
23
4.1
23
80
5
118
25
20
24
29
1.99
45330854--45330974
46
2.6
46
85
2
145
23
19
24
33
1.97
45332504--45332647
49
2.9
49
86
3
182
27
12
25
34
1.92
45333519--45333559
3
13.7
3
100
0
82
31
0
0
68
0.90
45336301--45336350
24
2.1
24
100
0
100
30
24
12
34
1.91
45339369--45339428
28
2.1
28
90
0
93
8
30
6
55
1.55
45339910--45339940
15
2.1
15
100
0
62
35
12
19
32
1.90
45343213--45343258
20
2.3
20
84
0
56
56
0
19
23
1.42
45349714--45349752
18
2.2
18
90
9
62
28
15
20
35
1.93
45351876--45351918
15
2.7
16
89
10
70
34
0
0
65
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45351876--45351925
15
3.0
17
82
14
68
34
0
0
66
0.92
45353021--45353050
15
2.0
15
93
0
51
33
16
3
46
1.64
45358672--45359036
192
1.9
192
94
0
640
24
13
25
36
1.92
45361047--45363006
44
43.8
44
76
5
1464
32
16
20
30
1.95
45361177--45361610
179
2.4
182
80
8
440
34
17
18
29
1.94
45363779--45363828
12
4.1
12
78
12
57
40
4
0
56
1.18
45365078--45365117
20
2.0
21
90
5
64
25
0
5
70
1.08
45366141--45366174
17
1.9
18
88
5
52
73
2
20
2
1.09
45367809--45367864
29
1.9
29
85
0
76
37
12
10
39
1.78
45368156--45368181
11
2.4
11
100
0
52
53
0
7
38
1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313