genome.fa.s26.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  151  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48010771--48010817	23	2.0	23	84	8	60	12	17	2	68	1.31
48010932--48010958	14	1.9	14	100	0	54	14	0	0	85	0.61
48012409--48012476	34	2.0	35	85	2	93	42	14	8	33	1.77
48027174--48027215	19	2.2	19	83	8	50	38	14	0	47	1.44
48031369--48031399	9	3.4	9	90	0	53	25	12	22	38	1.90
48031452--48031488	9	4.1	9	92	0	65	45	13	10	29	1.77
48031702--48031761	30	2.0	31	83	9	79	20	38	0	41	1.52
48032005--48032033	9	3.2	9	100	0	58	31	0	0	68	0.89
48034039--48034314	138	2.0	138	100	0	552	36	4	24	34	1.75
48040129--48040394	103	2.6	104	90	3	419	19	20	29	29	1.97
48063049--48063085	7	5.3	7	100	0	74	40	0	0	59	0.97
48069026--48069074	9	5.4	9	90	0	80	42	20	10	26	1.84
48069177--48069220	18	2.4	18	88	0	61	13	2	43	40	1.57
48072028--48072133	43	2.5	43	92	0	167	35	18	21	23	1.95
48072028--48072175	43	3.5	42	83	5	154	37	18	18	25	1.94
48072065--48072205	43	3.3	43	80	4	160	41	19	15	24	1.90
48085087--48085143	26	2.2	26	84	9	71	24	0	5	70	1.08
48088212--48088254	22	2.0	22	86	9	61	25	13	6	53	1.65
48088210--48088262	23	2.3	23	75	15	56	35	13	7	43	1.72
48093320--48093353	15	2.3	15	100	0	68	44	5	17	32	1.73
48105561--48105622	21	3.1	20	76	19	58	59	6	1	32	1.32
48111818--48111881	30	2.1	30	85	0	83	34	20	10	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48113340--48113446	43	2.6	41	80	7	126	25	17	27	29	1.98
48118123--48118159	17	2.1	17	90	10	56	78	0	0	21	0.75
48118022--48118174	16	8.7	17	67	22	50	65	3	1	30	1.17
48125994--48126077	24	3.5	24	69	13	64	19	27	22	30	1.98
48126140--48126208	26	2.7	26	88	2	95	15	30	23	30	1.96
48128810--48128851	21	2.0	21	85	0	57	33	0	23	42	1.55
48129202--48129355	24	6.3	24	73	17	86	22	23	21	33	1.98
48129202--48129369	25	6.9	23	72	16	74	21	23	21	33	1.97
48129202--48129385	50	3.7	49	73	11	135	22	22	21	33	1.98
48130673--48130914	78	3.1	78	98	0	466	28	9	17	44	1.80
48136810--48136843	3	11.3	3	100	0	68	67	0	32	0	0.91
48141156--48141189	3	11.0	3	93	6	59	32	0	0	67	0.91
48147541--48147575	17	2.1	17	88	0	52	31	2	5	60	1.35
48148834--48148922	44	2.0	45	82	8	110	33	5	25	34	1.80
48149010--48149148	57	2.4	57	83	5	174	51	3	0	44	1.24
48155166--48155208	23	1.9	22	90	4	68	53	2	9	34	1.46
48155217--48155245	15	1.9	15	100	0	58	86	0	0	13	0.58
48155305--48155385	36	2.2	38	77	16	91	49	1	8	40	1.41
48159572--48159823	126	2.0	126	96	0	468	29	10	13	46	1.78
48161281--48161478	61	3.2	60	75	11	207	30	8	16	43	1.78
48161275--48161477	67	3.1	64	76	11	209	31	8	16	43	1.77
48161732--48161946	107	2.0	107	100	0	430	33	11	15	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48162829--48162898	16	4.4	16	88	0	104	32	1	35	30	1.67
48162829--48162898	32	2.2	32	94	0	122	32	1	35	30	1.67
48162877--48162986	45	2.6	43	80	9	129	33	5	29	31	1.80
48163112--48163153	15	2.7	16	82	14	52	52	2	0	45	1.13
48163121--48163162	15	2.9	15	82	10	52	52	0	0	47	1.00
48163147--48163454	61	5.1	61	68	19	259	49	6	2	42	1.40
48163231--48163282	15	3.6	15	80	12	56	53	1	0	44	1.11
48163115--48163471	120	3.0	121	97	0	655	49	5	2	41	1.40
48163372--48163406	18	2.0	17	88	5	52	54	0	0	45	0.99
48165371--48165401	15	2.1	15	100	0	62	45	0	19	35	1.51
48173164--48173213	24	2.1	24	100	0	100	48	4	8	40	1.51
48173775--48174061	125	2.3	125	90	1	461	31	17	20	30	1.95
48177158--48177316	49	3.2	49	93	0	273	46	8	3	42	1.49
48177158--48177340	49	3.7	48	87	2	134	49	8	2	39	1.47
48177161--48177340	98	1.8	97	83	4	236	49	7	2	40	1.46
48179555--48179598	11	4.0	11	82	8	54	47	0	25	27	1.52
48180486--48180551	33	2.0	33	90	0	105	15	45	1	37	1.55
48180942--48181008	33	2.0	33	91	0	107	14	44	1	38	1.55
48182581--48182657	14	5.0	15	71	20	52	42	15	9	32	1.78
48182597--48182636	20	2.0	20	90	0	62	50	12	10	27	1.72
48182585--48182651	34	1.9	35	90	3	109	46	13	8	31	1.74
48183181--48183242	29	2.2	28	82	2	70	25	14	14	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48183463--48183800	126	2.7	126	92	1	572	30	14	21	33	1.93
48184728--48184784	26	2.2	26	100	0	114	59	7	7	26	1.49
48184782--48186830	28	69.3	28	91	3	2480	25	0	24	49	1.56
48184782--48186841	57	34.8	57	90	4	2530	25	0	24	48	1.56
48185410--48186275	9	91.3	10	61	30	91	25	0	23	51	1.48
48186346--48186437	29	3.4	25	78	17	80	25	1	27	46	1.59
48186744--48186838	29	3.6	25	77	17	77	24	1	28	46	1.59
48187070--48187126	24	2.4	23	82	8	69	3	22	28	45	1.69
48187381--48187426	18	2.6	18	82	0	56	39	8	30	21	1.84
48188485--48188550	32	2.1	32	91	2	107	66	0	0	33	0.92
48188556--48188624	22	3.3	22	66	22	67	44	0	26	28	1.54
48203970--48204018	25	2.0	24	84	11	64	38	10	8	42	1.68
48204254--48204326	25	2.7	26	71	20	60	56	2	2	38	1.28
48204239--48204329	37	2.5	35	82	13	103	53	4	3	38	1.37
48217744--48217864	41	3.0	41	77	2	127	33	24	21	19	1.97
48219380--48219418	20	2.0	20	100	0	78	51	5	0	43	1.24
48219953--48219986	11	3.2	11	95	4	61	50	0	0	50	1.00
48222361--48222393	12	2.8	12	95	0	57	27	45	21	6	1.75
48222338--48222393	24	2.3	24	84	0	67	26	39	23	10	1.87
48223979--48224094	38	3.1	38	78	0	115	39	28	13	18	1.89
48229652--48229806	27	5.7	27	82	1	150	18	19	20	41	1.91
48229652--48229796	54	2.7	55	80	6	172	18	20	20	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48231938--48231971	15	2.3	15	94	0	59	58	0	0	41	0.98
48239599--48239633	16	2.2	16	94	0	61	25	2	0	71	1.00
48239653--48239692	18	2.2	18	86	0	53	37	2	2	57	1.26
48241314--48241353	20	2.0	21	85	5	55	47	2	2	47	1.29
48247053--48247098	20	2.2	21	85	11	60	23	32	32	10	1.90
48253384--48253421	17	2.2	18	90	4	60	47	13	5	34	1.65
48253739--48253877	41	3.5	41	78	6	137	30	23	17	27	1.97
48254874--48254912	19	2.0	20	90	5	62	43	5	5	46	1.48
48260931--48260964	17	1.9	18	88	5	52	47	11	5	35	1.65
48262594--48262869	27	10.2	27	81	0	291	20	17	20	42	1.90
48264156--48264203	25	1.9	25	87	8	71	43	0	18	37	1.51
48264828--48264875	25	1.9	25	87	8	71	43	0	18	37	1.51
48264836--48265017	71	2.6	71	95	1	321	40	0	13	45	1.47
48264904--48265067	25	6.7	25	78	10	178	41	0	14	43	1.50
48265069--48265208	23	6.1	23	91	0	226	42	20	7	28	1.80
48264529--48265883	678	2.0	678	100	0	2710	37	16	14	31	1.89
48265506--48265553	25	1.9	25	87	8	71	43	0	18	37	1.51
48265514--48265695	71	2.6	71	95	1	321	40	0	13	45	1.47
48265582--48265745	25	6.7	25	78	10	178	41	0	14	43	1.50
48265747--48265968	23	9.7	23	91	1	356	43	22	7	27	1.80
48266292--48266339	25	1.9	25	87	8	71	43	0	18	37	1.51
48265442--48267013	786	2.0	786	100	0	3144	40	11	10	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48266300--48266481	71	2.6	71	95	1	321	40	0	13	45	1.47
48266368--48266531	25	6.7	25	78	10	178	41	0	14	43	1.50
48266533--48266754	23	9.7	23	91	1	356	43	22	7	27	1.80
48270029--48270364	123	2.7	123	96	1	611	33	20	16	29	1.95
48270501--48270529	14	2.1	14	100	0	58	20	20	31	27	1.98
48271491--48271551	24	2.6	24	79	7	63	73	1	21	3	1.06
48271566--48271604	7	5.3	7	82	11	51	74	2	0	23	0.94
48271558--48271604	23	2.0	23	91	0	76	76	2	2	19	0.99
48280486--48280533	23	2.0	25	88	8	73	56	4	29	10	1.52
48282849--48283003	43	3.7	41	76	13	163	23	17	28	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313