Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  139  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44766787--44766812
3
8.7
3
100
0
52
34
0
30
34
1.58
44768636--44768676
18
2.2
20
86
8
59
65
14
0
19
1.26
44771495--44771566
30
2.4
30
90
0
117
16
23
33
26
1.96
44772269--44772366
49
2.0
50
85
2
135
46
7
16
29
1.73
44779010--44779167
15
10.5
15
77
1
118
22
22
26
28
1.99
44779051--44779200
45
3.4
45
81
0
176
24
21
25
28
1.99
44778992--44779200
30
6.9
30
82
2
170
23
22
25
28
1.99
44779656--44779680
13
1.9
13
100
0
50
8
0
24
68
1.16
44780478--44780536
29
2.0
29
100
0
118
45
10
13
30
1.76
44783752--44783792
18
2.2
19
86
4
57
68
2
2
26
1.15
44784629--44784661
17
1.9
17
93
0
57
15
0
6
78
0.93
44786285--44786321
18
2.1
17
90
5
56
45
0
10
43
1.39
44787568--44787613
23
2.0
23
100
0
92
43
13
21
21
1.86
44791736--44791798
29
2.2
29
85
5
83
47
17
4
30
1.68
44794608--44794703
50
2.0
47
80
10
104
46
1
3
48
1.24
44794710--44794811
20
5.0
20
77
10
73
54
1
0
42
1.18
44795024--44795056
17
1.9
17
93
0
57
36
9
0
54
1.32
44795308--44795365
27
2.1
27
87
0
80
31
1
0
67
1.01
44796652--44796715
32
2.0
32
84
6
85
40
0
1
57
1.08
44796766--44796792
11
2.5
11
100
0
54
59
0
0
40
0.98
44797069--44797228
43
3.7
43
89
0
241
29
22
21
26
1.99
44797111--44797269
86
1.8
86
81
5
196
27
24
20
28
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44797220--44797337
42
2.7
42
79
8
121
25
27
18
28
1.98
44800544--44800866
9
37.4
9
69
16
188
32
1
20
45
1.60
44800540--44800572
16
2.1
16
94
0
57
30
0
21
48
1.50
44800544--44800796
25
10.0
25
79
5
219
30
1
21
46
1.62
44800582--44800774
34
5.7
33
71
17
98
30
2
21
45
1.63
44800562--44800823
59
4.4
59
76
9
235
32
1
20
45
1.62
44800632--44800725
43
2.2
43
88
5
145
32
1
22
43
1.60
44800562--44800793
34
6.9
34
71
15
96
30
2
21
45
1.64
44800782--44800863
12
7.2
12
71
20
61
39
0
14
46
1.45
44800823--44800866
21
2.1
21
87
8
63
36
0
15
47
1.46
44800921--44801042
19
6.1
19
68
19
79
50
2
3
43
1.31
44800989--44801045
20
2.9
19
87
7
87
54
0
0
45
0.99
44802028--44802069
7
6.1
7
80
5
50
45
16
2
35
1.61
44802030--44802073
20
2.1
21
87
4
63
50
13
2
34
1.55
44803721--44803759
15
2.6
15
100
0
78
20
7
43
28
1.79
44803840--44804018
83
2.2
83
84
2
225
28
23
17
30
1.97
44804400--44804452
21
2.5
21
78
6
63
52
24
0
22
1.47
44804782--44804818
13
2.7
14
88
12
51
54
32
0
13
1.40
44805309--44805699
166
2.4
166
90
0
604
24
23
22
29
1.99
44815198--44815249
25
2.1
25
100
0
104
42
3
19
34
1.69
44817798--44817854
25
2.3
24
84
3
69
40
3
0
56
1.17
44817823--44817863
13
3.2
13
85
0
55
43
0
0
56
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44831314--44831460
59
2.5
59
85
2
188
37
11
11
39
1.78
44831345--44831455
30
3.7
30
71
8
91
38
11
11
37
1.79
44831507--44831567
26
2.4
25
83
5
70
57
3
4
34
1.36
44832646--44832693
21
2.2
22
81
3
53
33
0
2
64
1.05
44837341--44837385
20
2.1
22
88
8
67
44
6
2
46
1.42
44839176--44839309
19
6.8
19
89
3
187
38
16
8
36
1.78
44839821--44840322
44
11.6
45
68
13
198
27
21
20
30
1.98
44839950--44840339
213
1.8
215
88
2
597
27
22
19
30
1.98
44840688--44840794
43
2.5
44
87
9
157
27
28
15
28
1.96
44840808--44841469
263
2.5
264
89
1
979
20
22
27
29
1.98
44840819--44841469
88
7.4
88
89
1
964
20
23
27
29
1.99
44842505--44842565
26
2.3
26
83
5
70
57
4
13
24
1.56
44846727--44846777
23
2.3
22
80
6
66
54
7
5
31
1.53
44847311--44847364
19
2.8
19
85
0
72
33
14
11
40
1.82
44848211--44848274
29
2.2
29
85
2
83
25
6
6
62
1.42
44848423--44848479
30
1.9
30
85
7
80
42
12
14
31
1.82
44850078--44850142
30
2.1
30
83
8
78
58
0
3
38
1.14
44853281--44853437
60
2.6
60
82
9
183
29
19
12
38
1.88
44853501--44853614
60
1.9
61
88
1
176
36
11
17
34
1.86
44863660--44863690
15
2.0
16
93
6
55
70
12
0
16
1.16
44864372--44864424
22
2.4
22
84
6
72
33
32
0
33
1.58
44864456--44864514
30
2.0
28
90
6
91
40
0
1
57
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44864459--44864521
29
2.1
30
85
8
85
39
0
1
58
1.07
44866484--44866536
22
2.4
22
84
6
72
33
32
0
33
1.58
44866568--44866626
30
2.0
28
90
6
91
40
0
1
57
1.09
44866571--44866633
29
2.1
30
85
8
85
39
0
1
58
1.07
44869385--44869429
8
6.1
8
75
19
53
24
0
11
64
1.26
44870280--44870399
42
2.9
42
87
5
197
50
5
3
41
1.41
44871892--44871937
9
5.1
9
89
0
65
36
10
39
13
1.79
44871973--44872066
39
2.4
39
96
0
170
35
3
17
44
1.64
44871973--44872085
39
2.9
38
86
5
102
35
2
16
45
1.62
44875593--44875719
65
2.0
65
98
0
245
27
31
17
23
1.97
44876144--44876366
112
2.0
112
97
0
419
33
17
18
30
1.94
44878386--44878666
124
2.3
126
88
5
430
32
22
15
29
1.95
44885909--44885940
3
10.7
3
100
0
64
34
0
0
65
0.93
44889809--44889850
20
2.0
21
86
4
59
59
11
2
26
1.45
44903851--44903876
1
26.0
1
100
0
52
0
0
0
100
0.00
44918580--44918632
24
2.2
24
86
6
72
56
1
3
37
1.28
44918580--44918634
3
18.3
3
77
7
58
58
1
3
36
1.26
44920249--44920463
43
4.9
44
71
6
150
26
21
18
33
1.96
44920189--44920567
131
2.9
131
89
3
566
27
21
18
31
1.97
44920549--44920656
45
2.4
45
79
1
119
28
19
15
36
1.93
44920631--44921279
132
4.9
132
90
0
978
29
24
17
28
1.98
44922483--44922545
7
8.7
7
81
11
74
12
19
0
68
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44922483--44922545
15
4.4
14
82
11
74
12
19
0
68
1.21
44922476--44922535
28
2.1
28
87
6
86
13
18
0
68
1.21
44927135--44927173
17
2.2
19
86
9
55
43
5
7
43
1.55
44927431--44927481
18
2.6
20
77
20
54
54
1
5
37
1.36
44927431--44927482
24
2.2
24
82
6
61
55
1
5
36
1.35
44929823--44929862
21
1.9
21
84
0
53
40
2
0
57
1.12
44935827--44935878
24
2.3
22
86
6
68
63
1
0
34
1.06
44946770--44946899
69
1.9
68
80
9
149
20
30
10
39
1.85
44950633--44950707
29
2.6
28
77
10
80
49
10
13
26
1.74
44957438--44957747
109
3.0
105
83
10
379
41
14
14
29
1.86
44957761--44957935
88
2.0
86
83
7
219
29
14
26
30
1.95
44957761--44957998
44
5.4
44
73
11
193
30
13
26
29
1.94
44973031--44973077
6
7.8
6
100
0
94
51
0
14
34
1.43
44973672--44973891
109
2.0
109
97
0
413
25
22
23
28
1.99
44988014--44988053
20
2.0
20
90
0
62
50
12
10
27
1.72
44988002--44988067
35
1.9
34
90
6
107
46
13
7
31
1.71
44997065--44997093
5
6.0
5
96
4
51
20
0
0
79
0.74
45003020--45003052
15
2.1
16
88
5
50
54
0
6
39
1.25
45003399--45003454
25
2.2
26
75
15
64
8
17
3
69
1.29
45004198--45004429
125
1.9
125
88
1
358
23
4
21
49
1.68
45009184--45009239
29
1.9
29
88
0
85
19
39
16
25
1.91
45010028--45010077
23
2.2
23
85
7
66
30
10
2
58
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45015884--45015917
15
2.3
15
89
0
50
47
2
0
50
1.16
45016024--45016071
24
2.0
25
87
4
71
37
10
0
52
1.36
45026236--45026272
18
2.0
19
89
5
58
32
24
13
29
1.93
45026240--45026276
18
2.1
18
100
0
74
35
21
10
32
1.88
45028719--45028749
14
2.1
14
94
5
53
38
0
0
61
0.96
45029157--45029476
41
7.8
41
81
6
317
17
23
25
34
1.96
45029157--45029477
123
2.6
121
83
7
355
17
23
24
34
1.96
45034282--45034677
31
13.0
30
72
19
286
45
11
2
40
1.51
45034301--45034365
17
3.6
17
72
22
60
50
9
0
40
1.34
45034364--45034411
25
1.9
25
83
8
62
39
10
2
47
1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313