Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  146  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46681736--46681799
27
2.4
27
86
5
76
18
28
21
31
1.97
46683453--46683620
25
6.8
25
70
13
87
20
26
19
33
1.96
46683475--46683592
49
2.4
49
83
7
132
19
25
19
35
1.95
46683514--46683616
50
2.1
49
81
5
118
21
25
20
33
1.97
46693745--46693816
35
2.1
35
94
0
126
18
15
30
36
1.91
46694252--46694286
17
2.1
17
88
0
52
74
2
2
20
1.08
46700867--46700939
19
3.9
18
75
8
56
57
20
8
13
1.62
46710769--46710834
33
2.0
33
100
0
132
36
12
12
39
1.80
46712761--46712840
3
27.3
3
74
14
69
31
5
1
62
1.24
46712764--46712851
19
4.6
19
72
21
69
30
6
1
61
1.29
46712864--46713066
22
8.8
23
80
15
242
33
5
7
53
1.54
46712858--46713094
24
10.0
24
75
16
226
32
6
8
52
1.57
46712858--46713092
46
5.0
46
97
2
425
32
6
8
52
1.57
46713029--46713096
28
2.4
28
82
7
84
36
7
7
48
1.59
46713481--46713543
33
1.9
33
86
0
90
36
12
1
49
1.51
46713729--46713765
15
2.5
15
90
0
56
40
2
5
51
1.39
46716157--46716185
10
2.9
10
100
0
58
72
0
0
27
0.85
46716956--46717035
38
2.1
39
88
2
117
11
35
5
48
1.61
46717327--46717365
21
1.9
19
90
10
60
71
7
15
5
1.26
46717923--46717980
30
2.0
30
82
3
73
29
10
17
43
1.82
46718121--46718171
18
2.8
18
80
13
59
66
5
1
25
1.24
46718645--46719476
3
277.7
3
99
0
1657
66
0
33
0
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46732486--46732671
89
2.1
89
83
2
228
30
1
13
53
1.50
46732794--46732830
16
2.3
16
86
13
58
29
2
5
62
1.31
46732574--46732832
106
2.5
102
82
9
319
27
0
14
57
1.43
46735145--46735183
12
3.2
12
85
0
51
48
20
0
30
1.50
46735193--46735256
26
2.4
28
77
12
73
39
7
4
48
1.53
46736011--46736035
8
3.1
8
100
0
50
0
16
12
72
1.13
46740170--46740203
3
11.3
3
100
0
68
67
0
32
0
0.91
46740424--46740464
12
3.4
12
83
9
57
80
2
17
0
0.82
46741822--46742171
45
7.9
43
73
9
249
29
24
23
22
1.99
46741783--46742192
89
4.6
89
82
4
470
30
23
22
23
1.99
46741762--46742178
178
2.3
178
85
1
532
30
23
22
23
1.99
46742395--46742658
50
5.3
50
69
3
190
30
20
20
28
1.98
46742377--46742665
100
2.9
100
84
1
391
30
20
21
28
1.98
46743072--46743126
26
2.1
26
100
0
110
20
25
14
40
1.90
46745110--46745245
72
1.9
72
84
0
182
32
17
16
33
1.93
46746337--46746428
17
5.0
17
70
17
67
46
9
11
31
1.73
46746578--46746647
33
2.1
33
82
10
81
61
11
7
20
1.53
46746761--46746817
19
3.3
16
80
20
62
1
15
0
82
0.75
46746761--46746818
10
6.6
9
77
16
59
1
15
0
82
0.74
46746761--46746821
27
2.2
28
88
2
88
1
14
0
83
0.72
46746761--46746817
17
3.3
17
83
9
71
1
15
0
82
0.75
46747132--46747170
7
5.3
7
87
9
51
0
17
0
82
0.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46747131--46747164
8
4.4
8
88
7
52
0
14
0
85
0.60
46747132--46747170
15
2.6
15
91
0
60
0
17
0
82
0.68
46747135--46747167
4
8.5
4
86
6
50
0
18
0
81
0.68
46747828--46748592
155
4.9
155
89
2
1101
36
20
16
26
1.93
46747810--46748592
78
10.1
78
89
2
1085
36
19
16
26
1.93
46748550--46748635
43
2.0
43
95
0
154
53
4
12
29
1.59
46748474--46748699
120
1.9
121
86
0
328
42
14
15
27
1.85
46755560--46755706
18
7.9
18
65
21
54
42
9
12
35
1.75
46755544--46755584
19
2.1
20
86
4
57
36
9
12
41
1.76
46755547--46755586
20
2.0
21
90
5
64
37
10
12
40
1.77
46755581--46755656
18
4.3
17
72
9
55
44
9
11
34
1.73
46762046--46762084
20
2.0
20
85
10
53
0
12
12
74
1.08
46762118--46762168
16
3.1
16
82
17
68
3
19
50
25
1.64
46762196--46762251
4
13.8
4
88
7
78
0
21
0
78
0.75
46762188--46762251
25
2.6
24
85
7
92
0
21
0
78
0.76
46762197--46762293
9
10.7
9
85
14
73
0
25
0
74
0.82
46762196--46762300
37
2.8
41
84
12
138
0
27
0
72
0.85
46762217--46762300
3
28.0
3
87
11
111
0
28
0
71
0.86
46762311--46762354
15
2.8
16
82
6
63
4
43
27
25
1.74
46762649--46762792
30
4.9
29
84
3
189
44
6
15
32
1.74
46762649--46762792
59
2.4
59
84
2
191
44
6
15
32
1.74
46764545--46764652
44
2.5
43
83
6
128
30
15
20
33
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46764638--46764737
44
2.3
44
92
0
173
30
26
20
24
1.98
46764788--46765233
88
5.1
87
78
5
423
23
25
24
27
2.00
46764748--46765233
175
2.8
173
81
4
526
23
24
23
27
2.00
46765029--46765172
44
3.3
43
65
12
112
22
25
27
25
2.00
46765064--46765198
44
3.1
43
63
8
101
17
26
30
25
1.97
46780270--46780296
13
2.1
13
100
0
54
22
7
25
44
1.79
46780322--46780366
19
2.4
19
85
7
56
26
20
8
44
1.80
46780532--46780593
31
2.0
31
96
0
115
30
16
35
17
1.92
46784151--46784953
89
9.0
89
91
0
1203
32
18
22
26
1.97
46785006--46785215
44
4.8
44
74
12
162
28
19
25
26
1.98
46785050--46785232
88
2.1
88
90
4
289
27
21
24
27
1.99
46787742--46787774
17
1.9
17
88
11
50
30
6
6
57
1.47
46788246--46788282
18
2.0
20
89
10
60
51
5
0
43
1.24
46803589--46803638
26
1.9
26
91
0
82
42
22
8
28
1.81
46812354--46812400
24
2.0
24
95
0
85
10
4
38
46
1.58
46812964--46813150
39
4.6
39
68
19
132
29
18
20
31
1.96
46813255--46813938
175
3.9
175
95
0
1113
29
20
18
30
1.97
46813003--46814970
44
45.5
45
68
15
533
28
21
19
30
1.97
46813645--46814238
304
2.0
301
90
4
944
29
20
19
30
1.97
46813127--46814413
479
2.7
477
86
4
1706
29
20
19
30
1.97
46812845--46814064
129
9.5
129
80
8
1062
29
20
18
30
1.97
46813900--46814974
175
6.2
173
92
3
1691
27
21
20
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46813329--46814974
350
4.7
343
86
5
1319
28
21
19
30
1.98
46813127--46814583
654
2.2
649
92
2
2381
28
21
19
30
1.97
46816010--46816056
21
2.2
21
88
0
67
25
38
10
25
1.88
46816150--46816181
9
3.4
10
87
12
50
9
6
0
84
0.78
46817010--46817113
9
10.6
9
76
18
57
3
6
7
81
0.97
46817061--46817111
18
2.9
17
88
5
75
1
0
11
86
0.66
46819158--46819206
19
2.5
20
80
6
57
42
12
18
26
1.85
46824590--46824617
12
2.3
12
100
0
56
71
7
7
14
1.29
46824593--46824635
21
2.0
22
90
4
70
58
9
9
23
1.58
46834310--46834374
32
2.0
32
96
0
121
35
10
18
35
1.86
46836458--46836569
10
12.2
9
72
15
54
29
5
0
65
1.15
46836476--46836566
19
4.8
18
75
14
85
28
6
0
64
1.18
46836486--46836559
9
7.5
10
70
18
57
31
6
0
62
1.21
46837464--46837511
22
2.2
22
85
3
62
64
4
0
31
1.12
46837446--46837511
32
2.1
30
83
10
80
60
3
0
36
1.12
46837699--46837747
20
2.4
21
80
13
57
28
2
2
67
1.13
46837742--46837799
25
2.3
24
83
13
73
20
1
1
75
0.97
46837719--46837797
27
3.0
27
80
15
85
22
2
1
73
1.03
46837760--46837801
17
2.4
17
88
8
57
23
0
2
73
0.94
46837742--46837799
24
2.4
25
86
11
77
20
1
1
75
0.97
46838559--46838598
15
2.7
15
100
0
80
30
15
7
47
1.72
46840663--46840864
111
1.8
111
89
0
269
32
12
23
31
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46842212--46842272
21
2.9
21
90
0
95
34
13
0
52
1.40
46845357--46845383
4
6.8
4
100
0
54
77
0
0
22
0.76
46848835--46848976
71
2.0
70
91
4
232
35
7
13
42
1.73
46848842--46848993
70
2.2
71
84
5
193
38
7
11
43
1.68
46849318--46849354
6
6.2
6
100
0
74
48
0
0
51
1.00
46849381--46849433
17
3.0
17
75
13
54
37
0
1
60
1.08
46850136--46850170
17
2.0
18
94
5
63
57
2
0
40
1.14
46850135--46850204
30
2.3
31
81
16
85
55
2
2
38
1.29
46850159--46850192
17
1.9
18
88
5
52
55
5
2
35
1.39
46852999--46853055
1
57.0
1
91
0
87
0
1
1
94
0.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313