genome.fa.s26.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  114  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37140979--37141269	120	2.4	122	89	4	462	43	2	4	49	1.35
37141213--37141249	19	2.0	19	85	15	51	45	0	0	54	1.00
37141414--37141504	45	2.0	45	85	2	121	37	28	6	27	1.82
37141485--37141553	16	4.2	16	92	3	120	37	36	0	26	1.57
37141485--37141553	33	2.1	32	94	2	120	37	36	0	26	1.57
37143618--37143669	26	2.0	26	96	0	95	55	15	23	5	1.61
37146634--37146690	19	2.9	19	85	12	80	29	5	0	64	1.15
37146622--37146690	20	3.6	19	79	12	70	33	4	0	62	1.15
37146657--37146701	20	2.3	20	85	11	58	28	4	0	66	1.11
37153307--37153353	16	2.9	16	78	6	51	63	0	19	17	1.30
37154093--37154151	29	1.9	30	83	10	75	54	8	11	25	1.65
37155969--37156020	24	2.2	24	82	0	59	50	5	3	40	1.45
37161178--37161234	26	2.1	26	80	9	60	36	3	7	52	1.46
37171730--37171776	20	2.4	21	79	13	55	46	2	0	51	1.13
37172269--37172308	20	2.0	20	86	13	57	47	0	0	52	1.00
37172390--37172579	94	2.0	94	98	0	371	37	4	9	47	1.57
37173735--37173837	14	7.6	14	69	26	71	40	0	2	55	1.21
37173735--37173838	19	5.3	21	72	21	84	41	0	2	54	1.21
37173738--37173837	10	10.0	10	70	23	61	40	1	3	56	1.22
37173777--37173838	2	35.0	2	75	23	59	43	0	0	56	0.99
37173735--37173838	39	2.6	41	72	26	98	41	0	2	54	1.21
37174662--37174718	28	2.0	30	86	10	84	54	1	12	31	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37174994--37175093	37	2.6	37	74	6	101	22	19	30	29	1.97
37174980--37175089	41	2.8	40	75	6	109	21	20	28	30	1.98
37178466--37178500	18	1.9	18	88	0	52	25	5	14	54	1.62
37188059--37188468	205	2.0	205	100	0	820	43	7	11	37	1.70
37193203--37193348	23	6.4	23	71	13	97	26	26	13	33	1.94
37193219--37193357	23	6.1	23	72	14	108	26	25	14	33	1.94
37193219--37193357	46	3.0	46	73	6	140	26	25	14	33	1.94
37195811--37195861	19	2.6	19	79	14	59	60	1	1	35	1.19
37197091--37197152	28	2.2	28	82	5	81	45	19	3	32	1.66
37199911--37199940	9	3.3	9	90	0	51	0	23	0	76	0.78
37199943--37199986	3	14.7	3	90	0	70	0	31	31	36	1.58
37200362--37200392	5	6.2	5	96	0	53	0	0	58	41	0.98
37201288--37201339	27	1.9	27	96	0	95	17	21	50	11	1.77
37201293--37201349	27	2.1	27	90	6	89	19	21	49	10	1.78
37201524--37201556	16	2.1	16	88	11	50	57	3	36	3	1.29
37214591--37214624	13	2.6	13	90	9	52	50	0	0	50	1.00
37214694--37214726	4	8.2	4	100	0	66	75	0	0	24	0.80
37216237--37216483	105	2.4	103	87	5	347	28	17	14	39	1.89
37219721--37219789	28	2.3	29	83	14	88	55	0	0	44	0.99
37220511--37220539	4	7.2	4	100	0	58	24	0	0	75	0.80
37221916--37221992	34	2.3	32	76	14	75	46	3	3	45	1.39
37224563--37224623	31	2.0	31	87	6	88	42	8	13	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37230305--37230337	11	2.9	12	86	13	52	66	0	0	33	0.92
37233287--37233314	5	5.6	5	100	0	56	21	17	17	42	1.89
37236198--37236312	29	4.0	28	79	10	115	36	16	5	41	1.71
37236197--37236306	58	1.9	58	84	3	150	38	17	5	39	1.73
37236655--37236725	3	23.7	3	78	13	58	74	0	25	0	0.82
37236654--37236732	17	4.9	17	80	11	96	75	0	24	0	0.80
37236654--37236735	7	11.3	7	78	11	67	76	0	23	0	0.78
37236658--37236735	13	5.6	13	80	14	66	76	0	23	0	0.78
37236897--37236949	26	2.0	26	85	0	70	30	45	18	5	1.73
37237032--37237094	5	11.8	5	75	18	56	84	0	15	0	0.63
37237032--37237095	11	5.9	11	79	15	71	84	0	15	0	0.63
37237031--37237095	12	5.3	12	78	10	78	84	0	15	0	0.62
37237456--37237498	21	2.0	21	90	0	68	37	11	9	41	1.74
37237653--37237690	17	2.2	18	90	4	60	26	18	13	42	1.87
37237612--37237691	35	2.3	35	82	2	97	28	16	10	45	1.79
37237659--37237764	17	6.1	17	71	14	81	31	13	11	44	1.79
37237727--37237764	20	1.9	20	100	0	76	36	10	10	42	1.74
37239974--37240854	442	2.0	442	98	0	1717	35	17	23	23	1.95
37243833--37243875	12	3.7	11	82	17	52	88	4	6	0	0.63
37244729--37244892	79	2.1	79	94	2	283	28	15	18	38	1.91
37245356--37246482	81	14.0	81	85	8	1166	26	15	19	38	1.91
37245348--37246468	163	7.0	162	82	9	1191	26	15	19	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37245829--37246254	82	5.0	88	88	5	498	23	15	20	40	1.90
37246654--37246766	29	3.9	29	81	4	129	36	18	4	40	1.71
37246653--37246775	58	2.1	59	84	4	160	37	18	4	39	1.70
37246991--37247015	6	4.2	6	100	0	50	84	0	16	0	0.63
37247115--37247193	3	26.7	3	78	14	76	72	0	27	0	0.85
37247143--37247196	7	8.1	7	81	8	51	77	0	22	0	0.76
37247140--37247196	19	3.1	19	80	12	66	77	0	22	0	0.77
37247292--37247330	11	3.5	11	82	6	51	84	0	15	0	0.62
37247691--37247733	21	2.0	21	90	0	68	34	13	9	41	1.77
37247844--37247969	36	3.5	36	81	4	148	31	13	10	44	1.77
37247886--37247968	18	4.7	18	82	13	82	30	13	13	43	1.82
37247904--37248044	34	4.0	34	75	13	108	32	11	12	43	1.77
37247870--37248039	17	9.5	17	70	15	94	31	12	11	44	1.78
37248019--37248056	20	1.9	20	94	0	67	36	7	10	44	1.68
37249420--37249477	30	1.9	30	86	6	82	43	5	24	27	1.75
37249814--37249999	50	3.7	50	88	0	282	25	23	31	19	1.98
37252971--37253023	24	2.2	24	86	0	79	30	7	30	32	1.85
37253327--37253822	45	11.1	45	82	6	562	27	17	25	29	1.97
37253807--37253909	44	2.4	44	81	1	118	29	20	28	22	1.98
37253948--37254084	72	1.9	72	86	0	193	34	11	26	27	1.91
37254226--37254343	44	2.7	44	94	0	200	22	17	27	32	1.96
37254423--37254635	46	4.7	45	77	8	180	30	16	22	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37254867--37255249	50	7.7	49	75	4	336	31	20	19	27	1.97
37254846--37255254	100	4.1	100	88	0	604	30	21	21	26	1.98
37255369--37255483	44	2.6	44	83	2	133	32	19	19	29	1.96
37255562--37255648	44	2.0	45	83	2	113	32	14	24	28	1.95
37255606--37255703	45	2.2	45	80	5	110	32	19	20	27	1.97
37256493--37256534	17	2.4	18	80	4	50	35	4	0	59	1.19
37257138--37257165	6	4.7	6	100	0	56	67	0	17	14	1.22
37263987--37264039	27	2.0	27	88	0	79	28	3	22	45	1.70
37264485--37264509	4	6.2	4	100	0	50	52	0	0	48	1.00
37265717--37265749	15	2.1	16	88	5	50	0	3	36	60	1.12
37267547--37267893	173	2.0	173	100	0	694	42	15	12	29	1.83
37268671--37268740	25	2.8	25	82	4	79	54	1	0	44	1.09
37270137--37270170	2	17.0	2	100	0	68	0	50	0	50	1.00
37274944--37275038	48	1.9	50	89	4	149	53	10	1	34	1.42
37281896--37281933	6	6.3	6	93	0	58	13	68	2	15	1.32
37287023--37287059	16	2.3	17	86	13	60	54	21	10	13	1.69
37289475--37289529	26	2.1	27	82	3	67	60	21	9	9	1.55
37295761--37295861	50	2.0	50	100	0	202	31	17	5	44	1.73
37298864--37298916	24	2.2	24	96	0	97	33	3	49	13	1.60
37298876--37299428	274	2.0	274	97	0	1045	36	12	22	28	1.91
37300007--37300082	31	2.4	31	86	2	98	27	11	5	55	1.57
37304546--37304589	17	2.7	16	82	13	54	34	4	0	61	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37304550--37304589	15	2.5	16	88	8	55	35	5	0	60	1.19
37304893--37304959	29	2.4	28	87	5	98	34	4	1	59	1.26
37304894--37304972	29	2.7	29	86	3	88	35	3	1	59	1.24
37306523--37306563	19	2.2	18	86	4	55	46	9	2	41	1.50
37308918--37308953	15	2.4	15	90	0	54	30	30	27	11	1.91
37317121--37317147	14	1.9	14	100	0	54	0	7	0	92	0.38
37321727--37321788	19	3.0	19	77	20	54	41	1	4	51	1.33
37332218--37332246	3	9.7	3	100	0	58	68	0	0	31	0.89
37342782--37342820	14	2.8	14	85	11	53	61	0	0	38	0.96
37342771--37342816	22	2.1	21	84	4	56	56	0	0	43	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313