genome.fa.s26.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  106  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34925718--34926313	88	7.2	78	71	15	335	28	16	18	37	1.92
34925718--34925943	79	2.9	78	85	2	256	30	18	17	33	1.94
34926086--34926145	30	2.0	30	90	6	95	23	10	25	41	1.85
34925740--34926313	254	2.3	249	85	6	763	28	16	18	36	1.92
34927547--34927589	13	3.0	15	80	13	54	37	0	6	55	1.27
34929222--34929481	45	5.8	45	77	8	269	25	28	15	30	1.96
34929222--34929388	89	1.9	89	89	0	262	25	29	14	29	1.95
34929421--34930105	78	8.8	78	92	1	1074	24	24	19	31	1.98
34929795--34929922	37	3.4	37	65	29	97	21	24	18	35	1.96
34932451--34932494	20	2.2	20	95	0	79	31	22	4	40	1.74
34934704--34934800	51	1.9	51	87	4	142	31	26	8	32	1.86
34938437--34938469	17	1.9	17	88	11	50	69	0	0	30	0.88
34938437--34938470	18	1.9	17	88	5	50	70	0	0	29	0.87
34938727--34938784	22	2.6	22	81	7	64	41	17	5	36	1.72
34938763--34938817	18	2.9	19	89	5	94	38	14	10	36	1.81
34939682--34939721	18	2.2	18	100	0	80	27	12	10	50	1.72
34945034--34945126	44	2.1	45	88	11	138	37	26	4	31	1.76
34945108--34945162	16	3.4	16	84	0	74	30	29	5	34	1.80
34945783--34945817	17	2.1	17	89	10	54	34	0	22	42	1.54
34948470--34948546	27	2.7	27	82	6	73	57	3	7	31	1.45
34948592--34948631	20	2.0	20	85	0	53	60	2	15	22	1.47
34952862--34952906	22	2.0	22	86	4	63	37	17	6	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34952878--34952975	35	2.7	37	87	12	150	35	16	10	37	1.82
34952885--34952975	19	4.9	19	92	8	161	36	15	10	37	1.83
34953094--34953132	21	1.9	20	84	5	51	12	2	12	71	1.24
34953338--34953463	44	2.8	44	87	1	171	26	27	15	29	1.96
34953325--34953463	45	3.1	45	86	1	172	25	27	15	31	1.95
34953493--34953839	78	4.4	78	95	1	590	25	23	17	34	1.96
34954377--34954423	21	2.3	20	78	10	51	21	21	10	46	1.81
34964203--34964247	19	2.4	18	86	13	65	0	33	0	66	0.92
34964457--34964496	20	2.0	20	95	0	71	47	2	0	50	1.14
34967479--34967521	23	1.9	22	90	4	68	6	6	44	41	1.58
34971774--34971808	16	2.1	17	89	5	54	62	11	0	25	1.28
34971790--34971911	38	3.2	39	82	7	144	49	12	4	33	1.62
34971898--34971944	16	3.1	16	74	25	57	65	14	0	19	1.26
34972018--34972073	25	2.2	26	87	3	78	0	35	0	64	0.94
34972014--34972062	20	2.4	18	78	21	53	0	32	0	67	0.91
34972194--34972232	20	2.0	20	94	0	69	10	17	2	69	1.28
34973599--34973643	11	3.9	11	80	11	54	35	0	2	62	1.08
34975740--34975908	46	3.7	46	86	1	212	42	13	23	21	1.87
34983568--34983784	46	4.7	46	85	4	276	42	14	22	20	1.88
34983569--34983640	21	3.2	21	65	14	54	41	11	22	25	1.86
34983568--34983784	93	2.3	91	86	6	285	42	14	22	20	1.88
34983879--34983971	26	3.5	26	72	16	75	40	4	19	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34985311--34985364	27	2.0	27	96	0	99	48	12	18	20	1.81
34991557--34991606	26	1.9	26	100	0	100	28	16	38	18	1.91
34994397--34994424	12	2.3	12	100	0	56	0	7	0	92	0.37
34997017--34997065	26	2.0	23	85	14	64	55	4	0	40	1.19
35003057--35003110	23	2.3	23	80	3	72	38	11	3	46	1.57
35008146--35008179	15	2.3	15	100	0	68	44	5	17	32	1.73
35008843--35008881	19	2.0	21	85	10	55	71	12	5	10	1.28
35009564--35009676	3	37.0	3	74	16	90	32	4	2	60	1.31
35009738--35009770	15	2.1	16	88	5	50	36	3	0	60	1.12
35009851--35009893	16	2.6	17	82	10	54	39	2	0	58	1.11
35009848--35009893	19	2.4	19	86	13	60	39	2	0	58	1.10
35009959--35010070	26	4.4	26	73	6	86	31	7	6	55	1.52
35010203--35010264	22	2.9	22	81	15	60	32	3	6	58	1.40
35010648--35010717	21	3.2	20	76	21	70	34	5	7	52	1.52
35013681--35013752	2	38.0	2	74	10	53	38	1	5	54	1.33
35013697--35013752	15	4.2	13	80	10	53	39	1	3	55	1.28
35013681--35013731	9	5.7	9	81	11	52	39	0	5	54	1.24
35013851--35013936	24	3.6	24	71	18	72	31	3	4	60	1.34
35013942--35013975	12	2.8	12	91	8	52	35	0	0	64	0.94
35014211--35014255	17	2.3	21	78	17	53	28	6	8	55	1.56
35015942--35016053	40	2.8	40	89	5	172	29	22	25	22	1.99
35016110--35016371	40	6.7	40	69	12	139	29	18	22	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35015963--35016391	147	2.8	152	86	6	579	31	18	21	28	1.97
35016264--35016368	41	2.6	41	87	4	151	29	16	23	30	1.96
35017028--35017066	19	2.1	18	90	4	60	33	0	7	58	1.26
35018704--35018749	23	2.0	23	100	0	92	39	21	13	26	1.90
35019921--35019973	26	2.0	26	82	7	63	26	15	20	37	1.92
35021459--35021516	26	2.2	26	96	0	107	34	24	6	34	1.82
35023206--35023269	19	3.4	19	70	8	67	32	4	4	57	1.40
35023210--35023284	38	2.0	38	94	0	132	34	4	5	56	1.41
35023713--35023810	37	2.5	39	74	9	94	24	21	28	25	1.99
35023713--35023825	38	2.9	39	73	6	113	23	22	27	27	1.99
35024476--35024513	19	2.0	19	100	0	76	36	0	15	47	1.46
35025866--35025904	19	2.1	18	85	9	51	58	7	0	33	1.26
35025985--35026104	9	13.6	9	76	10	113	45	20	0	32	1.57
35026116--35026148	5	6.6	5	100	0	66	42	18	0	39	1.50
35030061--35030123	31	2.0	31	100	0	126	52	12	15	19	1.74
35031231--35031259	14	2.1	14	93	6	51	34	0	10	55	1.34
35031982--35032155	43	4.3	43	74	15	172	20	17	28	32	1.96
35032010--35032070	32	1.9	32	89	0	95	19	18	26	36	1.94
35032920--35032953	4	8.5	4	100	0	68	0	26	0	73	0.83
35036059--35036092	17	2.0	17	94	0	59	38	2	17	41	1.65
35041698--35041768	28	2.4	29	81	11	83	59	4	4	32	1.36
35050168--35050231	30	2.1	30	88	0	92	37	20	9	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35052412--35052519	26	4.2	26	93	0	189	32	7	24	36	1.83
35054301--35054587	137	2.1	137	98	0	556	24	19	24	32	1.98
35056966--35057086	58	2.1	59	96	3	228	61	1	3	33	1.22
35057078--35057150	8	9.0	8	76	13	69	71	0	1	27	0.95
35057077--35057140	25	2.7	23	80	9	74	71	0	1	26	0.94
35057078--35057140	17	3.8	17	67	14	51	73	0	1	25	0.93
35057077--35057140	23	2.6	25	79	18	80	71	0	1	26	0.94
35057079--35057139	33	1.9	31	83	6	77	73	0	1	24	0.92
35057110--35057150	17	2.4	17	92	8	66	68	0	0	31	0.90
35061578--35061685	26	4.2	26	93	0	189	32	7	24	36	1.83
35063467--35063753	137	2.1	137	96	0	520	25	18	24	32	1.97
35065667--35065845	58	3.1	58	98	1	342	61	1	3	33	1.22
35065727--35065825	32	3.3	32	70	21	113	62	1	4	32	1.20
35065837--35065909	8	9.0	8	76	13	69	71	0	1	27	0.95
35065836--35065899	25	2.7	23	80	9	74	71	0	1	26	0.94
35065837--35065899	17	3.8	17	67	14	51	73	0	1	25	0.93
35065836--35065899	23	2.6	25	79	18	80	71	0	1	26	0.94
35065838--35065898	33	1.9	31	83	6	77	73	0	1	24	0.92
35065869--35065909	17	2.4	17	92	8	66	68	0	0	31	0.90
35066836--35066921	43	2.0	43	95	0	154	23	31	22	23	1.98
35073773--35073850	35	2.2	36	95	2	140	26	41	2	29	1.69
35095306--35095340	17	2.1	17	94	0	61	34	2	5	57	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35095985--35096011	5	5.4	5	100	0	54	62	0	0	37	0.95
35097612--35097664	27	2.0	27	85	7	72	75	1	7	15	1.11
35099251--35099294	21	2.1	21	95	0	79	43	9	6	40	1.63
35101422--35101476	21	2.7	21	84	15	71	23	20	40	16	1.91
35102124--35102174	5	10.0	5	81	12	59	80	1	0	17	0.81
35102124--35102168	11	3.8	12	82	8	56	82	2	0	15	0.77
35102123--35102174	10	5.0	11	79	11	65	80	1	0	17	0.80
35102123--35102187	16	4.1	16	79	11	64	78	4	0	16	0.91
35103265--35103304	12	3.4	12	86	6	55	25	0	2	72	0.97
35103263--35103303	11	3.6	11	83	6	55	26	0	2	70	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313