genome.fa.s26.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  134  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43370012--43370109	23	4.3	23	86	0	133	33	24	20	21	1.97
43370012--43370109	46	2.1	46	90	0	151	33	24	20	21	1.97
43370599--43370774	87	2.0	87	97	0	334	39	21	4	34	1.74
43373670--43373727	26	2.2	27	96	3	109	25	3	0	70	1.03
43373666--43373714	7	6.3	7	78	21	53	20	2	0	77	0.87
43373670--43373737	26	2.6	26	88	4	75	23	2	4	69	1.21
43381839--43381863	6	4.2	6	100	0	50	16	0	0	84	0.63
43383712--43383849	19	6.9	19	71	23	79	40	2	0	57	1.11
43383710--43383808	44	2.2	45	92	3	173	42	3	0	54	1.15
43383779--43383868	28	3.2	28	80	13	96	33	2	0	64	1.06
43383709--43383853	9	15.9	9	70	22	65	40	2	0	57	1.10
43383814--43383879	16	3.9	16	72	18	53	33	1	1	63	1.13
43383782--43383867	29	3.0	29	83	11	90	33	2	0	63	1.07
43395375--43395415	18	2.2	19	86	4	57	41	0	0	58	0.98
43395411--43395462	19	2.7	20	79	11	63	36	1	3	57	1.28
43399346--43399436	30	3.0	31	72	18	91	58	5	0	36	1.21
43399916--43400174	121	2.1	122	95	3	479	46	11	12	29	1.76
43401635--43401676	21	2.0	21	100	0	84	52	9	14	23	1.71
43404925--43405104	89	2.0	89	100	0	360	36	12	18	32	1.88
43424209--43424275	10	6.7	10	71	15	50	56	5	1	35	1.33
43424247--43424311	18	3.6	18	78	10	62	53	3	4	38	1.37
43424655--43424697	23	1.9	22	85	4	59	34	2	0	62	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43424655--43424701	25	2.0	23	83	8	58	34	2	0	63	1.06
43425051--43425075	13	1.9	13	100	0	50	40	12	0	48	1.40
43429444--43429511	32	2.1	32	100	0	136	22	11	16	50	1.77
43430762--43430939	59	3.0	59	99	0	347	30	10	15	43	1.80
43432909--43432963	22	2.7	20	74	20	51	72	9	18	0	1.10
43433316--43433359	23	1.9	24	90	9	74	54	0	20	25	1.45
43433592--43433638	24	2.0	23	84	12	60	51	4	12	31	1.59
43433886--43433944	27	2.2	28	82	14	79	22	0	30	47	1.51
43440729--43440983	130	1.9	132	88	4	379	28	19	12	39	1.88
43445865--43445919	25	2.3	25	84	6	69	43	0	5	50	1.25
43450293--43450336	12	3.8	12	84	3	54	54	0	4	40	1.21
43450739--43450772	14	2.2	16	90	10	54	52	0	0	47	1.00
43450712--43450788	36	2.1	36	83	7	93	53	1	1	44	1.17
43450712--43450788	37	2.1	37	83	11	97	53	1	1	44	1.17
43460827--43460864	18	2.2	17	90	4	58	65	0	5	28	1.14
43462337--43462401	31	2.2	31	86	5	89	33	13	15	36	1.87
43462251--43462429	92	1.9	92	88	2	270	34	11	12	41	1.79
43470812--43470846	15	2.2	17	90	10	56	14	0	5	80	0.89
43470926--43471101	92	1.9	92	79	4	194	41	12	13	32	1.81
43472571--43472791	36	6.1	36	98	0	415	30	19	11	38	1.87
43474804--43474944	36	3.6	36	78	17	156	29	19	14	35	1.92
43474826--43474980	46	3.6	44	78	16	182	28	21	13	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43474803--43474980	82	2.2	82	91	0	293	30	20	13	35	1.91
43477781--43477814	7	4.9	7	100	0	68	73	0	0	26	0.83
43504440--43504567	25	5.4	25	73	14	90	20	26	16	36	1.93
43504523--43504612	22	4.0	22	85	4	108	18	22	18	40	1.92
43514544--43514580	15	2.5	15	87	12	51	29	0	2	67	1.04
43518028--43518062	17	2.1	17	88	0	52	45	8	2	42	1.49
43519239--43519284	23	2.0	24	83	12	60	43	0	4	52	1.21
43519243--43519294	21	2.6	19	83	16	70	48	0	1	50	1.12
43519643--43519720	6	13.5	6	71	24	53	19	14	1	65	1.34
43519644--43519720	5	14.6	5	75	15	50	19	14	1	64	1.35
43519644--43519720	23	3.4	22	80	8	84	19	14	1	64	1.35
43519679--43519731	11	4.8	11	77	6	54	20	11	1	66	1.33
43519678--43519726	23	2.1	23	92	0	80	20	12	2	65	1.35
43519826--43519947	5	22.4	5	70	21	59	29	18	0	52	1.45
43519847--43519947	28	3.4	28	78	16	112	29	16	0	53	1.44
43520213--43520286	22	3.3	22	75	11	78	17	14	1	66	1.33
43520228--43520262	5	6.6	5	87	12	52	17	17	2	62	1.44
43520228--43520262	11	3.3	10	85	14	52	17	17	2	62	1.44
43520268--43520533	48	5.5	48	91	4	410	24	15	0	60	1.34
43520409--43520518	21	4.9	21	69	19	62	20	13	0	65	1.26
43520410--43520523	22	5.1	22	72	22	87	20	14	0	65	1.26
43520259--43520592	27	13.6	26	67	19	175	23	14	0	61	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43520677--43520713	18	2.1	18	89	0	56	45	2	10	40	1.53
43526306--43526337	15	2.3	15	89	10	50	40	18	0	40	1.51
43526835--43526984	45	3.4	45	86	1	205	38	21	20	19	1.93
43526887--43527013	45	3.2	39	83	10	125	37	22	22	18	1.95
43528539--43528684	37	4.0	37	92	1	233	25	21	16	36	1.94
43528651--43528916	46	5.5	46	83	10	334	28	21	14	35	1.93
43528691--43528910	52	4.3	52	83	8	290	27	22	14	35	1.92
43528654--43528916	98	2.7	98	95	0	463	28	21	14	35	1.93
43534984--43535036	23	2.3	23	83	6	63	58	3	1	35	1.27
43544753--43545013	136	1.9	133	95	2	468	34	16	18	31	1.93
43545540--43545840	152	2.0	150	86	3	417	32	22	14	29	1.94
43547809--43547838	13	2.3	13	94	0	51	23	23	6	46	1.75
43553578--43553643	31	2.1	31	83	5	80	31	19	22	25	1.98
43555874--43555935	22	2.8	22	85	2	79	50	1	1	46	1.20
43555911--43555950	16	2.5	16	91	0	62	47	2	7	42	1.45
43555953--43556072	59	2.1	59	88	1	188	42	5	8	44	1.56
43556138--43556181	24	1.9	24	90	9	74	61	2	0	36	1.09
43557526--43557593	29	2.3	29	80	9	77	39	20	16	23	1.91
43573054--43573110	16	3.6	16	95	0	87	29	0	36	33	1.58
43573356--43573390	18	2.0	17	88	5	52	54	0	0	45	0.99
43579106--43579179	37	1.9	39	81	13	91	36	6	4	52	1.47
43581801--43581931	59	2.2	59	82	5	149	31	14	16	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43589531--43589663	49	2.7	50	79	10	148	26	18	27	28	1.98
43590678--43590759	41	2.0	41	95	0	146	47	10	6	35	1.64
43591755--43592050	147	2.0	147	100	0	592	41	18	20	18	1.91
43595183--43595228	20	2.3	20	78	14	51	45	19	4	30	1.70
43604044--43604123	39	2.1	38	90	2	124	61	0	7	31	1.24
43608774--43608813	5	8.0	5	91	0	62	65	0	35	0	0.93
43610715--43610829	25	4.6	25	95	0	194	14	21	23	40	1.91
43610975--43611023	25	1.9	25	83	4	62	20	22	22	34	1.97
43610994--43611098	24	4.3	24	82	8	115	16	24	22	36	1.94
43610994--43611098	48	2.2	49	84	5	133	16	24	22	36	1.94
43610994--43611174	73	2.5	72	80	5	175	18	25	21	34	1.96
43613410--43613488	31	2.6	31	84	9	101	27	15	10	46	1.77
43613433--43613498	31	2.2	30	83	8	80	33	13	9	43	1.76
43616000--43616070	31	2.3	31	82	7	90	43	9	9	36	1.71
43616187--43616215	6	4.8	6	100	0	58	17	0	13	68	1.20
43621265--43621298	18	1.9	17	88	5	50	64	0	0	35	0.94
43626246--43626308	30	2.1	30	90	0	99	58	12	3	25	1.49
43630141--43630194	15	3.7	15	77	5	65	12	1	11	74	1.16
43637381--43637497	39	2.9	39	85	3	171	47	10	11	30	1.72
43641381--43641446	33	2.0	33	84	0	87	40	9	13	36	1.76
43646138--43646295	78	2.0	78	98	0	307	32	12	0	55	1.37
43646584--43646617	5	6.4	5	93	6	50	61	38	0	0	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43646585--43646617	11	3.0	11	87	12	50	63	36	0	0	0.95
43646898--43646948	25	2.0	25	100	0	102	43	11	21	23	1.85
43654864--43654888	13	1.9	13	100	0	50	48	0	4	48	1.20
43658905--43659261	178	2.0	178	98	0	687	33	21	21	23	1.97
43659438--43661216	889	2.0	889	100	0	3558	30	22	20	27	1.98
43666964--43666995	9	3.6	9	95	0	55	6	0	59	34	1.23
43669739--43669773	18	1.9	18	88	0	52	51	5	5	37	1.50
43672524--43672563	20	2.1	20	86	9	57	20	2	2	75	1.04
43673112--43673166	25	2.3	22	77	17	56	21	0	7	70	1.11
43673117--43673188	26	2.8	26	78	14	69	26	0	5	68	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313