genome.fa.s26.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  109  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35744465--35744543	24	3.3	23	76	15	65	41	1	2	54	1.22
35750722--35750905	84	2.2	84	89	0	269	19	20	37	22	1.94
35763455--35763490	19	1.9	19	88	5	56	52	5	2	38	1.39
35769803--35769862	31	1.9	31	90	6	95	68	10	13	8	1.39
35769803--35769863	15	4.0	15	76	4	59	68	9	13	8	1.38
35770469--35770503	18	1.9	18	88	0	52	37	0	0	62	0.95
35779395--35779445	4	12.8	4	100	0	102	25	0	25	49	1.51
35786756--35786786	8	3.9	8	95	0	53	38	0	22	38	1.54
35786833--35786910	36	2.2	36	85	0	102	28	7	28	35	1.85
35787323--35787365	19	2.3	18	80	4	50	23	4	6	65	1.37
35791298--35791326	2	14.5	2	100	0	58	48	0	51	0	1.00
35793415--35793481	25	2.7	24	81	6	62	40	2	4	52	1.37
35795600--35795645	4	11.8	4	95	4	85	50	23	0	26	1.50
35796353--35796398	21	2.2	21	92	7	76	32	6	0	60	1.22
35796353--35796393	12	3.7	12	87	12	61	34	4	0	60	1.18
35796443--35796476	14	2.7	12	90	9	50	35	5	0	58	1.22
35796454--35796496	17	2.5	17	80	0	50	34	6	0	58	1.25
35796660--35796700	7	6.0	7	78	16	50	39	0	2	58	1.11
35796794--35796827	3	11.3	3	93	0	59	32	0	2	64	1.08
35796909--35796939	15	2.1	15	93	0	53	25	0	3	70	1.02
35799601--35799641	4	10.0	4	84	5	55	46	0	2	51	1.14
35799601--35799644	12	3.6	12	87	6	61	43	0	2	54	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35805089--35805157	32	2.2	32	89	0	102	37	18	8	34	1.82
35808926--35808979	22	2.5	22	96	0	99	51	11	18	18	1.74
35810062--35810092	15	2.1	15	93	0	53	29	0	6	64	1.18
35813613--35813666	22	2.5	22	96	0	99	51	11	18	18	1.74
35814749--35814779	15	2.1	15	93	0	53	29	0	6	64	1.18
35817780--35817865	35	2.6	33	79	13	97	16	9	8	66	1.43
35817798--35817867	35	2.0	35	91	0	113	14	10	8	67	1.42
35829092--35829358	141	1.9	143	79	8	303	43	2	13	40	1.57
35833332--35833366	10	3.5	10	88	11	54	25	14	5	54	1.62
35836723--35836747	7	3.6	7	100	0	50	28	0	12	60	1.32
35836768--35836804	16	2.4	15	90	4	56	43	0	13	43	1.44
35839072--35839124	22	2.4	22	83	0	70	43	0	15	41	1.46
35838994--35839643	108	6.0	109	72	14	466	36	1	17	44	1.57
35838972--35839130	87	1.8	86	84	5	214	37	1	19	41	1.63
35839109--35839158	22	2.3	22	89	3	75	32	0	16	52	1.44
35839284--35839337	22	2.5	22	90	0	81	40	0	14	44	1.46
35839395--35839443	22	2.2	22	92	0	80	44	2	18	34	1.61
35839053--35839679	219	2.9	215	85	5	832	36	1	17	45	1.56
35839504--35839545	22	1.9	22	90	0	66	42	0	16	40	1.48
35839514--35839556	22	2.0	22	85	0	59	46	0	16	37	1.47
35839426--35839600	52	3.3	51	72	13	138	36	0	16	46	1.52
35839596--35839666	28	2.5	29	81	6	83	40	0	18	40	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35839706--35840202	126	4.0	126	89	0	719	38	17	16	27	1.91
35843437--35843481	21	2.1	21	83	0	54	2	13	48	35	1.54
35844363--35844387	7	3.6	7	100	0	50	60	12	0	28	1.32
35845274--35845383	53	2.1	53	91	3	177	61	2	3	31	1.27
35847505--35847563	25	2.4	25	91	0	100	20	22	27	30	1.98
35855017--35855067	23	2.2	24	85	3	68	41	1	1	54	1.22
35855159--35855200	12	3.5	12	87	9	59	54	0	0	45	0.99
35855164--35855201	19	2.0	19	90	10	60	57	0	0	42	0.98
35855970--35856005	13	2.8	13	84	16	56	38	5	2	52	1.39
35856403--35856488	40	2.1	41	97	2	165	55	2	13	27	1.51
35863391--35863482	48	1.9	48	100	0	184	27	18	18	35	1.94
35867075--35867116	16	2.6	16	92	7	68	35	0	2	61	1.09
35867153--35867199	16	3.3	14	80	13	60	36	2	2	59	1.21
35867149--35867265	18	6.9	16	69	24	57	34	3	1	60	1.23
35869313--35869365	25	2.2	24	86	3	70	39	20	20	18	1.92
35872541--35872587	16	2.9	16	87	0	67	29	0	0	70	0.88
35872558--35872593	9	4.3	9	83	16	51	22	0	0	77	0.76
35872541--35872632	23	4.0	23	70	11	62	29	0	2	68	1.01
35872766--35872810	19	2.4	19	80	0	54	26	0	4	68	1.08
35879561--35879729	88	1.9	88	100	0	338	38	12	18	30	1.88
35880478--35880646	88	1.9	88	100	0	338	38	12	18	30	1.88
35879209--35881042	917	2.0	917	100	0	3668	35	19	14	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35890991--35891027	3	12.3	3	100	0	74	67	0	32	0	0.91
35892284--35892381	31	3.1	30	73	12	90	48	2	4	44	1.33
35892466--35892498	17	1.9	17	93	0	57	36	0	9	54	1.32
35892706--35892755	25	2.0	24	84	7	64	18	0	32	50	1.47
35892723--35892770	16	3.2	15	80	8	53	18	0	35	45	1.50
35895830--35895875	17	2.6	17	82	3	56	63	6	0	30	1.20
35896301--35896354	28	1.9	28	92	0	90	48	31	14	5	1.67
35897280--35897358	28	2.7	29	80	13	90	15	2	36	45	1.59
35899238--35899357	53	2.3	51	80	5	134	41	4	2	51	1.34
35901984--35902164	40	4.6	40	78	0	184	14	13	25	46	1.81
35906860--35906884	13	1.9	13	100	0	50	24	36	32	8	1.84
35911464--35911496	17	1.9	17	100	0	66	54	6	18	21	1.64
35924497--35924584	44	2.0	44	95	0	158	21	25	20	32	1.97
35925747--35925788	22	2.0	21	85	4	57	28	11	7	52	1.64
35927877--35927949	29	2.5	28	79	16	78	46	13	5	34	1.67
35937627--35937745	61	2.0	61	96	0	220	50	17	10	21	1.75
35937634--35937759	61	2.1	60	89	4	148	50	18	11	19	1.78
35938000--35938206	91	2.3	88	80	8	238	29	22	14	33	1.93
35950716--35950745	16	1.9	15	93	6	51	70	0	0	30	0.88
35951553--35951610	20	3.0	18	75	10	53	44	1	13	39	1.54
35951554--35951638	40	2.1	41	84	4	109	45	3	14	36	1.62
35951721--35951759	20	2.0	20	89	0	60	43	2	15	38	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35951755--35951850	20	4.8	20	74	7	86	41	6	14	37	1.71
35951971--35952055	20	4.2	20	71	5	73	37	4	17	40	1.71
35951983--35952070	40	2.2	40	86	8	117	36	6	14	42	1.73
35952005--35952070	20	3.3	19	72	8	51	37	7	13	40	1.73
35954745--35954840	48	2.0	48	91	0	156	21	13	30	34	1.92
35956690--35956852	20	8.1	20	73	9	109	36	6	16	40	1.74
35956697--35956858	40	4.1	39	79	10	168	35	4	17	41	1.71
35956661--35956851	100	1.9	100	84	2	258	36	5	16	41	1.71
35956697--35956854	80	2.0	80	85	7	214	36	5	17	41	1.71
35956933--35957031	20	4.9	20	73	0	72	36	6	16	41	1.73
35956938--35957031	40	2.3	40	87	3	127	38	5	14	41	1.69
35956963--35957040	20	3.9	20	75	0	75	41	6	12	39	1.69
35957495--35957519	13	1.9	13	100	0	50	48	0	0	52	1.00
35957542--35957597	22	2.6	22	83	5	62	51	0	0	48	1.00
35958096--35958129	16	2.1	17	88	5	52	44	5	0	50	1.26
35961520--35961560	21	2.0	21	90	0	64	29	21	29	19	1.98
35975729--35975774	23	1.9	25	86	8	69	34	17	19	28	1.94
35975767--35975857	24	3.7	24	86	5	112	34	17	20	27	1.95
35979770--35979844	11	6.9	11	76	3	71	40	17	2	40	1.64
35979978--35980111	48	2.8	46	83	11	164	32	8	5	52	1.57
35981090--35981122	7	4.7	7	92	0	57	30	0	12	57	1.35
35981814--35981848	2	17.5	2	87	0	52	51	0	5	42	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35988588--35988835	126	2.0	119	87	6	354	29	17	17	35	1.93
35989376--35989445	19	3.9	18	82	17	92	44	22	1	31	1.62
35989541--35989579	15	2.6	15	84	15	62	51	35	0	12	1.40
35989550--35989603	22	2.5	23	88	8	78	48	35	0	16	1.47
36002571--36002605	17	2.0	18	88	5	54	17	2	37	42	1.64
36003280--36003412	40	3.3	40	86	0	167	32	15	27	24	1.96
36010934--36010960	12	2.2	12	100	0	54	92	0	7	0	0.38
36011631--36011740	43	2.6	43	84	5	134	30	27	20	21	1.98
36011750--36011834	43	2.0	43	92	0	143	27	30	15	27	1.96
36011650--36011828	99	1.8	99	83	2	243	27	29	17	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313