genome.fa.s26.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  115  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37343461--37343505	19	2.3	20	78	17	51	37	0	17	44	1.49
37343745--37343805	30	2.0	30	100	0	122	39	0	29	31	1.57
37348182--37348345	81	2.0	81	89	2	249	40	11	21	26	1.87
37352608--37352784	51	3.4	51	90	7	257	29	23	12	35	1.91
37369222--37369248	6	4.5	6	100	0	54	18	33	33	14	1.92
37369284--37369418	37	3.4	39	73	11	114	31	24	17	25	1.97
37370406--37370500	43	2.2	44	83	7	113	44	3	1	51	1.24
37378850--37378887	18	2.0	20	85	10	53	31	0	2	65	1.06
37381871--37382257	126	3.1	125	83	3	455	28	16	16	38	1.90
37382325--37382392	33	2.3	31	82	14	81	50	11	0	38	1.39
37382342--37382452	34	3.3	34	86	2	154	42	14	0	43	1.45
37385038--37385085	21	2.2	21	77	3	51	70	16	4	8	1.27
37387264--37387702	87	5.0	87	95	0	725	29	23	23	23	1.99
37387860--37387945	41	2.1	40	80	2	91	32	19	19	27	1.97
37387969--37388063	44	2.2	44	78	3	102	25	17	23	33	1.96
37388983--37389027	20	2.2	20	80	11	56	4	8	4	82	0.94
37391508--37391542	18	1.9	18	88	0	52	17	11	2	68	1.31
37391796--37392009	71	3.0	71	86	2	288	28	5	20	46	1.71
37393710--37393837	64	2.0	64	98	0	247	24	18	24	32	1.97
37402166--37402228	21	3.2	21	65	21	64	47	19	14	19	1.82
37402165--37402248	37	2.3	37	97	0	159	50	19	11	19	1.78
37411008--37411080	36	2.0	37	97	2	139	21	16	0	61	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37414513--37414537	12	2.1	12	100	0	50	24	36	0	40	1.55
37418517--37418556	15	2.7	15	92	0	71	45	10	15	30	1.78
37419866--37420385	125	4.2	126	87	1	715	29	16	16	37	1.91
37420462--37420562	34	3.0	34	84	9	143	42	13	0	42	1.51
37420439--37420572	34	3.9	33	80	10	135	42	13	2	41	1.56
37422086--37422251	82	2.0	83	81	3	192	39	11	16	32	1.85
37427612--37427641	3	10.0	3	100	0	60	33	0	0	66	0.92
37429498--37429553	26	2.2	25	75	6	60	41	1	3	53	1.29
37429929--37430097	84	2.0	88	82	10	215	33	4	13	49	1.62
37432261--37432295	7	5.0	7	89	0	52	11	14	2	71	1.25
37436159--37436383	43	5.2	43	85	3	256	26	18	27	28	1.98
37438750--37438826	29	2.6	30	82	12	88	18	16	12	51	1.75
37439434--37439518	41	2.1	41	100	0	170	52	11	0	35	1.38
37444659--37444700	3	14.0	3	89	0	66	30	2	2	64	1.19
37444710--37444753	20	2.2	20	87	0	61	34	4	2	59	1.30
37444712--37444754	18	2.6	16	85	7	50	32	6	2	58	1.38
37444728--37444788	26	2.5	24	74	15	61	37	13	1	47	1.52
37444835--37444912	39	2.0	39	82	0	93	34	8	5	51	1.56
37445248--37445781	111	4.8	110	90	2	788	30	16	18	34	1.93
37449121--37449151	9	3.3	9	95	4	53	87	3	0	9	0.66
37449159--37449197	6	6.3	6	83	16	53	79	0	20	0	0.73
37450319--37450432	43	2.6	44	79	2	115	31	14	28	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37451556--37451834	150	1.9	150	86	0	405	36	25	15	22	1.94
37451619--37452353	50	14.7	50	71	3	456	32	23	19	24	1.98
37451669--37452385	100	7.2	100	87	1	794	32	23	20	23	1.98
37451558--37452384	50	16.5	50	70	5	321	33	23	19	23	1.97
37453901--37453933	3	11.0	3	93	0	57	33	3	0	63	1.10
37453942--37453985	18	2.6	16	85	7	52	31	6	2	59	1.36
37453959--37454017	24	2.5	22	74	15	55	37	13	1	47	1.53
37454064--37454138	39	1.9	39	83	0	96	34	9	4	52	1.53
37454473--37454895	110	3.8	110	86	4	545	29	16	18	35	1.93
37461784--37461829	11	4.2	11	82	0	56	23	6	4	65	1.35
37461786--37461828	22	2.0	22	95	0	77	25	6	4	62	1.40
37462696--37462723	9	3.1	9	100	0	56	57	10	0	32	1.33
37462666--37462807	68	2.1	66	94	2	248	45	9	4	40	1.58
37462796--37462837	16	2.6	16	84	0	57	45	7	2	45	1.44
37472651--37472798	73	2.0	72	83	5	181	31	20	12	35	1.90
37473789--37473831	23	2.0	22	86	9	61	41	4	9	44	1.57
37473927--37473984	26	2.2	27	84	9	75	63	5	29	1	1.25
37475044--37475144	37	2.6	38	73	6	87	23	20	27	27	1.99
37483488--37483543	21	2.7	21	80	5	69	23	17	14	44	1.85
37483533--37483602	21	3.3	21	71	0	68	12	22	18	45	1.83
37483469--37483625	42	3.7	42	79	5	138	16	22	17	43	1.87
37483599--37483639	21	2.0	20	86	9	57	12	21	19	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37485842--37485892	18	2.8	17	77	19	50	66	0	3	29	1.09
37485854--37485887	9	4.0	9	88	11	54	70	0	0	29	0.87
37493799--37493840	12	3.2	14	74	19	54	40	0	7	52	1.29
37497375--37497441	32	2.1	32	83	2	82	35	8	4	50	1.54
37497821--37497875	27	2.0	27	100	0	110	29	25	7	38	1.83
37502956--37502989	13	2.6	13	90	9	52	35	11	11	41	1.78
37503284--37503337	20	2.8	20	76	18	60	27	5	0	66	1.13
37503392--37503450	9	5.9	10	71	15	50	37	3	0	59	1.14
37504805--37504933	43	3.0	42	80	15	156	22	18	28	30	1.97
37505770--37505889	47	2.6	47	85	2	152	25	16	17	40	1.90
37505781--37505937	23	6.7	23	75	10	104	27	15	17	39	1.90
37523743--37523775	2	16.5	2	100	0	66	51	48	0	0	1.00
37530927--37530965	16	2.4	16	91	0	60	56	7	0	35	1.28
37530969--37531010	16	2.6	16	92	0	66	42	7	2	47	1.43
37543367--37543401	18	1.9	18	88	0	52	25	20	14	40	1.90
37546981--37547543	249	2.3	250	90	0	867	30	22	17	29	1.97
37546981--37547546	125	4.5	125	83	2	708	30	22	17	29	1.97
37548058--37548098	17	2.4	17	80	19	50	46	0	2	51	1.14
37549331--37549416	43	2.0	43	97	0	163	29	16	15	39	1.89
37549595--37549659	32	2.0	32	93	0	112	32	13	41	12	1.82
37553843--37553869	11	2.5	11	100	0	54	59	14	7	18	1.58
37563557--37563654	31	3.2	28	76	13	81	43	8	19	28	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37568745--37568789	16	2.7	17	82	6	56	84	6	8	0	0.78
37568744--37568788	12	3.7	12	81	3	54	84	4	11	0	0.76
37571613--37571711	49	2.0	49	92	3	164	25	14	23	37	1.92
37575548--37575860	43	7.3	43	83	3	373	30	31	17	20	1.95
37578841--37578878	14	2.7	14	91	0	58	36	28	0	34	1.58
37579211--37579289	22	3.6	21	70	11	52	43	35	1	20	1.60
37579503--37579578	40	1.9	40	88	0	116	38	23	17	21	1.93
37579562--37579785	41	5.5	40	89	3	340	30	33	19	16	1.94
37579493--37579782	123	2.4	122	87	2	395	31	31	18	18	1.96
37579845--37579953	40	2.8	40	85	1	157	21	22	21	34	1.96
37598791--37599102	156	2.0	156	100	0	624	32	10	16	41	1.82
37601611--37601645	16	2.1	17	89	5	54	48	0	8	42	1.33
37612088--37612131	22	2.0	23	81	4	54	65	2	0	31	1.05
37612373--37612425	21	2.5	21	93	0	88	30	39	9	20	1.84
37619003--37619044	22	1.9	22	90	0	66	40	14	28	16	1.88
37619033--37619078	20	2.3	20	80	0	56	52	13	21	13	1.73
37619957--37620014	30	1.9	30	89	0	89	41	3	24	31	1.71
37620226--37620257	13	2.5	13	94	0	55	31	0	12	56	1.37
37620352--37620593	50	4.7	50	86	4	297	26	24	29	19	1.99
37620352--37620601	100	2.4	103	88	6	364	26	24	29	20	1.99
37627551--37627608	30	1.9	30	89	0	89	41	3	24	31	1.71
37627820--37627851	13	2.5	13	94	0	55	31	0	12	56	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37627946--37628187	50	4.7	50	86	4	297	26	24	29	19	1.99
37627946--37628195	100	2.4	103	88	6	364	26	24	29	20	1.99
37633520--37633567	21	2.3	21	78	7	53	6	16	4	72	1.20
37633711--37633757	24	1.9	25	86	4	69	48	4	0	46	1.21
37636096--37636142	24	2.0	23	84	12	60	51	4	14	29	1.62
37636452--37636494	23	2.0	23	86	9	63	11	4	39	44	1.62
37638341--37638407	19	3.4	19	70	22	57	37	4	1	56	1.29
37638347--37638406	20	3.0	20	73	9	68	36	5	1	56	1.31
37638899--37638961	32	2.0	32	81	6	74	41	9	7	41	1.67
37640491--37640528	16	2.3	17	90	4	60	5	26	5	63	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313