genome.fa.s26.2.7.7.80.10.50.1000.209.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  209  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64295021--64295046	5	5.2	5	100	0	52	80	0	0	19	0.71
64295902--64295944	13	3.5	13	78	18	56	48	11	0	39	1.40
64295902--64295953	23	2.3	23	93	0	86	50	11	0	38	1.39
64306481--64306523	19	2.2	20	84	12	63	32	18	0	48	1.48
64306678--64306785	38	2.8	40	75	11	107	31	25	19	23	1.98
64307451--64307508	29	2.0	29	80	12	66	41	25	1	31	1.66
64307692--64307735	16	2.8	17	83	13	58	4	18	9	68	1.34
64311974--64312006	15	2.1	16	88	5	50	33	3	3	60	1.27
64313296--64313423	29	4.4	30	73	16	92	46	2	0	50	1.19
64322303--64322340	10	3.9	10	89	6	60	31	0	5	63	1.17
64322306--64322362	19	3.0	19	89	0	78	38	0	3	57	1.16
64322313--64322366	19	2.8	19	91	0	81	42	0	1	55	1.10
64322313--64322373	19	3.3	19	88	2	70	44	0	1	54	1.10
64322489--64322526	17	2.1	19	85	14	53	34	5	10	50	1.59
64323700--64323880	60	3.0	60	100	0	362	45	4	6	43	1.52
64323729--64323883	30	5.2	30	59	17	70	44	3	7	44	1.49
64324627--64325096	119	3.9	119	98	0	913	38	22	18	20	1.93
64325132--64325178	25	1.9	24	82	4	58	53	10	17	19	1.72
64327935--64328067	27	5.0	27	79	7	128	36	16	22	24	1.94
64328704--64328758	20	2.7	21	78	10	62	32	0	9	58	1.30
64331480--64331882	45	9.1	45	79	10	296	21	16	14	47	1.82
64331501--64331882	90	4.3	90	79	11	407	20	16	15	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64331504--64331882	135	2.9	133	80	9	429	20	16	15	47	1.82
64331693--64331762	21	3.2	21	71	11	68	21	17	11	50	1.77
64331792--64331865	38	1.9	38	94	0	130	17	16	18	47	1.83
64335494--64335583	44	2.0	44	95	0	162	47	13	14	24	1.80
64338237--64338294	24	2.4	25	77	16	68	32	0	8	58	1.28
64339554--64339591	17	2.2	17	95	0	67	21	31	28	18	1.97
64340277--64340377	38	2.7	38	90	0	166	36	26	18	17	1.94
64341279--64341550	139	2.0	139	96	0	508	40	13	5	39	1.69
64342754--64342797	21	2.1	21	83	8	54	52	31	0	15	1.44
64343223--64343268	17	2.5	19	83	16	62	58	0	8	32	1.28
64348638--64348701	18	3.9	18	66	29	52	42	6	15	35	1.72
64354952--64355017	13	5.1	13	78	7	80	39	25	7	27	1.83
64355231--64355284	27	2.0	26	89	3	81	11	0	16	72	1.12
64367369--64367430	32	1.9	32	96	0	115	35	37	0	27	1.57
64376732--64376777	17	2.7	17	93	0	74	15	23	30	30	1.95
64379520--64379675	78	2.0	78	94	0	276	37	14	17	30	1.90
64379959--64380263	154	2.0	153	98	0	592	29	14	11	44	1.80
64382678--64382723	21	2.1	22	84	4	58	67	2	23	6	1.25
64394959--64394988	14	2.1	14	100	0	60	23	20	46	10	1.80
64401107--64401181	38	2.0	38	97	0	141	34	13	33	18	1.90
64404305--64404482	27	6.6	26	82	6	178	27	15	27	29	1.96
64404306--64404461	82	1.9	81	86	3	224	27	16	27	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64404302--64404482	82	2.2	81	82	2	220	27	16	27	29	1.97
64406106--64406330	40	5.7	40	86	6	289	24	21	28	25	1.99
64406106--64406363	80	3.2	80	82	8	235	25	21	28	24	1.99
64411888--64411918	10	3.1	10	95	0	53	29	12	32	25	1.93
64416051--64416128	39	2.0	39	94	0	138	42	1	28	28	1.64
64428083--64428182	47	2.1	47	96	0	182	36	10	28	26	1.88
64428083--64428222	47	3.0	47	85	4	158	33	10	30	25	1.90
64428210--64428378	46	3.7	46	93	0	266	34	8	33	24	1.85
64437852--64437888	16	2.3	16	90	0	56	45	16	24	13	1.83
64439065--64439183	29	4.2	29	77	6	118	29	29	12	28	1.93
64443578--64443676	29	3.5	28	69	14	85	25	31	16	27	1.96
64445073--64445115	19	2.3	18	81	14	52	18	4	16	60	1.52
64450979--64451135	27	5.8	27	89	0	215	30	23	7	38	1.81
64450966--64451269	54	5.6	54	80	3	209	36	22	7	34	1.82
64450966--64451337	27	13.7	27	79	6	171	37	21	7	33	1.82
64450966--64451164	81	2.5	81	83	0	254	33	22	7	36	1.83
64450966--64451252	81	3.6	81	78	1	209	35	22	7	33	1.83
64451373--64451475	27	3.9	27	74	12	81	37	19	19	23	1.94
64451768--64451811	21	2.0	22	87	12	65	22	11	40	25	1.87
64451810--64451845	17	2.1	17	100	0	72	11	27	27	33	1.91
64452174--64452270	20	4.9	20	91	5	96	40	9	19	30	1.83
64452184--64452270	20	4.3	20	92	2	140	40	10	18	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64452320--64452455	26	5.3	26	83	3	163	29	22	22	26	1.99
64452320--64452455	52	2.7	51	87	5	197	29	22	22	26	1.99
64452588--64452679	42	2.2	42	90	0	139	31	14	18	35	1.90
64452694--64452773	31	2.5	31	87	2	88	31	15	22	31	1.94
64452703--64452781	31	2.5	31	93	0	131	27	16	26	29	1.97
64453561--64453619	28	2.1	28	100	0	118	28	27	13	30	1.94
64464934--64465032	28	3.5	28	68	15	87	28	16	26	29	1.97
64464934--64465069	56	2.4	56	92	2	218	26	14	28	30	1.95
64464962--64465057	28	3.4	28	70	16	90	22	14	33	29	1.94
64468406--64468447	22	1.9	22	100	0	84	26	14	14	45	1.83
64468764--64468798	14	2.6	14	90	4	54	8	0	5	85	0.73
64476252--64476328	36	2.1	36	90	4	120	61	2	24	11	1.43
64477798--64477921	66	1.9	66	81	3	151	27	25	19	28	1.99
64501875--64501901	5	5.4	5	100	0	54	0	0	18	81	0.69
64508637--64508773	68	2.0	68	95	2	249	42	13	20	23	1.88
64510545--64510577	17	2.0	17	88	5	50	15	0	21	63	1.30
64513027--64513105	39	2.0	39	90	0	122	48	13	11	26	1.77
64516346--64516424	39	2.0	39	90	0	122	45	12	11	30	1.77
64524033--64524071	20	2.0	20	90	9	64	66	0	0	33	0.92
64524255--64524325	9	7.7	9	74	12	63	35	2	39	22	1.69
64524852--64524912	20	3.1	19	83	9	61	68	4	1	24	1.18
64525640--64525668	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64530905--64530933	13	2.1	14	93	6	51	58	27	0	13	1.36
64535491--64535566	27	2.8	27	84	9	93	32	10	23	32	1.89
64535668--64535718	26	2.0	26	84	7	68	37	5	23	33	1.79
64547234--64547422	87	2.2	87	89	0	288	39	21	15	23	1.92
64547183--64547424	29	8.4	29	78	0	243	36	21	16	25	1.94
64561649--64561911	40	6.6	39	86	4	278	25	27	21	25	1.99
64561649--64561911	120	2.2	119	82	4	307	25	27	21	25	1.99
64561843--64561920	40	1.9	41	82	10	97	26	28	20	24	1.99
64569598--64569940	40	8.6	40	90	2	451	27	28	20	24	1.99
64573025--64573082	29	2.0	30	93	3	100	36	17	22	24	1.95
64577087--64577227	75	1.9	75	84	0	192	24	26	24	24	2.00
64578035--64578086	21	2.5	21	80	0	59	28	9	30	30	1.89
64581817--64581846	7	4.3	7	100	0	60	30	0	26	43	1.55
64591401--64591492	29	3.2	29	72	7	80	21	14	25	39	1.91
64596445--64596482	19	2.0	19	94	0	67	31	28	5	34	1.80
64596466--64596490	13	1.9	13	100	0	50	32	24	8	36	1.84
64601867--64601896	3	10.0	3	100	0	60	33	0	0	66	0.92
64602240--64602327	44	2.0	44	97	0	167	27	11	19	42	1.85
64603246--64603301	22	2.5	22	88	2	76	30	26	0	42	1.56
64603273--64603376	51	2.0	51	94	0	181	29	26	0	43	1.55
64603528--64603583	26	2.2	26	78	12	62	33	0	5	60	1.19
64604521--64604545	7	3.6	7	100	0	50	28	0	12	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64605196--64605230	18	1.9	18	94	0	61	25	31	8	34	1.86
64605653--64605739	44	2.0	45	88	6	133	39	0	11	49	1.39
64605765--64605870	30	3.7	30	73	18	109	50	24	0	24	1.49
64605747--64605868	53	2.3	54	81	4	131	49	25	0	25	1.51
64605800--64607748	23	81.4	23	76	17	1727	46	22	1	29	1.60
64605869--64607748	97	19.6	98	80	13	1593	46	22	1	29	1.60
64606752--64606782	16	1.9	16	100	0	62	51	12	0	35	1.40
64607119--64607229	56	2.0	57	92	1	188	45	28	0	24	1.59
64607087--64607783	118	5.8	119	80	12	686	46	23	1	29	1.61
64607736--64607778	23	2.0	21	86	9	59	44	27	2	25	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313