genome.fa.s26.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  107  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35109766--35109813	24	2.0	24	83	0	60	43	14	20	20	1.87
35111532--35111570	11	3.5	11	82	3	51	25	2	15	56	1.52
35113705--35113740	19	1.9	18	94	5	63	30	19	5	44	1.73
35116257--35116281	2	12.5	2	100	0	50	52	0	0	48	1.00
35126681--35126809	23	5.7	23	76	11	90	19	22	19	38	1.93
35126754--35126810	22	2.5	22	88	2	78	21	24	19	35	1.96
35139503--35139589	21	4.0	23	80	10	92	14	21	25	37	1.92
35140700--35140782	34	2.4	34	85	0	103	38	7	13	40	1.72
35140709--35140782	18	4.4	16	79	16	69	37	6	12	43	1.69
35145144--35145720	287	2.0	284	87	2	825	23	16	16	43	1.87
35148269--35148312	24	2.0	21	86	13	61	56	0	2	40	1.11
35148368--35148443	11	6.8	11	73	21	61	53	1	2	42	1.23
35151550--35151601	11	4.9	11	79	9	63	28	26	1	42	1.66
35151549--35151601	20	2.5	21	87	9	81	30	26	1	41	1.66
35151550--35151608	31	1.9	31	85	0	82	28	28	1	40	1.66
35151628--35151658	15	2.1	15	93	0	53	22	6	0	70	1.09
35153396--35153438	18	2.4	18	84	0	59	16	25	13	44	1.85
35153828--35154324	116	4.3	116	94	0	850	39	3	9	47	1.52
35157343--35157636	126	2.3	125	88	2	430	28	21	18	31	1.97
35157716--35157910	93	2.0	98	82	9	242	41	16	1	40	1.58
35163457--35163566	54	2.0	54	98	0	211	33	6	13	46	1.69
35166440--35166477	20	1.9	20	88	0	58	44	2	2	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35166495--35166530	19	1.9	19	88	5	56	58	5	0	36	1.22
35168863--35168903	22	2.0	22	90	9	68	73	12	9	4	1.24
35169326--35169361	18	2.1	18	89	5	56	41	0	25	33	1.55
35170531--35170572	17	2.5	17	88	0	66	40	4	21	33	1.74
35175174--35175277	38	2.8	38	85	4	140	36	25	19	18	1.94
35177964--35178129	71	2.4	71	94	1	289	37	16	6	40	1.73
35179813--35179874	27	2.3	27	83	5	81	22	20	19	37	1.95
35181669--35181727	21	2.8	22	80	7	61	22	0	8	69	1.15
35181698--35181747	26	2.0	24	88	7	73	30	0	6	64	1.18
35187438--35187550	32	3.5	32	100	0	226	30	6	26	36	1.81
35189271--35189323	26	2.0	26	85	7	72	37	22	15	24	1.92
35190386--35190414	3	9.7	3	100	0	58	65	0	0	34	0.93
35191411--35191470	28	2.1	28	87	0	84	61	0	3	35	1.12
35191930--35191975	20	2.2	20	80	3	56	69	10	4	15	1.32
35208724--35209728	501	2.0	501	98	0	1929	35	20	22	22	1.96
35209952--35210112	80	2.0	79	80	7	182	27	17	6	49	1.70
35210960--35210992	17	1.9	17	93	0	57	81	0	12	6	0.85
35212445--35212765	45	7.3	45	66	8	122	27	21	23	27	1.99
35212511--35212690	42	4.2	43	67	10	116	28	20	24	26	1.99
35212312--35212876	131	4.3	131	88	3	832	28	20	24	27	1.99
35212845--35213212	44	8.2	44	70	11	140	29	22	21	27	1.99
35212840--35213003	44	3.7	44	79	5	145	25	21	25	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35212885--35213193	89	3.4	89	72	13	254	29	20	21	28	1.98
35215032--35215099	27	2.8	25	79	14	70	39	7	0	52	1.29
35216524--35216644	65	1.9	65	86	5	174	47	6	11	33	1.66
35216482--35216650	64	2.6	64	80	3	187	47	7	10	34	1.67
35222117--35222180	31	2.1	31	81	0	74	46	6	1	45	1.37
35224794--35224850	18	3.2	17	73	9	51	59	8	5	26	1.48
35245831--35245996	83	2.0	83	95	0	296	33	13	18	34	1.90
35246026--35246188	82	2.0	82	97	0	308	41	14	11	33	1.81
35256461--35256507	10	4.5	10	82	15	51	87	0	8	4	0.67
35257344--35257907	119	4.7	119	95	0	984	32	17	19	30	1.95
35257865--35258009	73	2.0	73	97	0	272	35	18	19	26	1.95
35257938--35258132	83	2.3	83	83	6	227	31	17	22	27	1.97
35259788--35259826	21	1.9	20	85	15	53	23	2	5	69	1.21
35273669--35273703	18	1.9	18	88	11	54	0	8	51	40	1.33
35283536--35283583	23	2.0	25	88	8	73	56	4	29	10	1.52
35285071--35285460	205	1.9	205	96	0	717	36	4	20	37	1.73
35298711--35298958	127	2.0	127	90	0	397	35	22	10	31	1.88
35301419--35301472	25	2.2	25	82	0	63	25	16	9	48	1.76
35301637--35301677	6	6.8	6	88	0	64	17	26	0	56	1.41
35307824--35308045	89	2.5	89	84	5	283	39	18	7	34	1.80
35310069--35310097	11	2.5	12	88	11	51	55	13	13	17	1.70
35312065--35312195	41	3.3	39	81	7	158	33	24	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35313649--35313717	28	2.5	27	75	9	68	24	14	17	43	1.86
35316408--35316524	48	2.4	48	89	0	189	19	17	26	36	1.94
35323110--35323189	15	5.4	15	72	12	67	58	12	17	11	1.62
35323121--35323198	15	5.2	15	74	9	61	56	14	16	12	1.68
35326566--35326639	29	2.6	29	87	8	98	27	16	31	25	1.96
35326995--35327099	39	2.6	38	82	7	120	28	22	26	21	1.99
35326956--35327139	40	4.6	39	79	11	146	25	23	27	23	2.00
35327074--35327230	40	3.9	40	90	0	233	24	22	28	24	1.99
35327415--35327816	200	2.0	200	98	0	777	27	15	29	27	1.96
35330870--35331463	47	12.9	47	93	4	1005	30	8	31	29	1.88
35331243--35331310	35	1.9	35	100	0	136	26	11	33	27	1.91
35331195--35331451	82	3.0	84	84	11	347	28	10	33	27	1.90
35331584--35331662	37	2.1	37	88	0	113	24	17	31	26	1.97
35332913--35332958	23	2.0	23	95	0	83	45	4	23	26	1.71
35335767--35335942	46	3.8	46	79	12	207	21	20	27	30	1.98
35335764--35335934	93	1.8	93	93	0	297	21	21	28	29	1.98
35339192--35339224	14	2.4	14	95	5	59	75	0	6	18	1.00
35341390--35341449	23	2.6	23	97	0	111	36	48	3	11	1.56
35341452--35341527	40	1.9	40	89	5	118	32	31	15	19	1.94
35343698--35343730	17	1.9	17	93	0	57	48	0	12	39	1.40
35343721--35343755	9	3.9	9	88	0	52	45	0	2	51	1.16
35343711--35343763	13	4.1	13	76	7	54	45	0	9	45	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35346956--35347034	27	2.9	27	84	0	104	39	22	13	24	1.91
35347294--35347337	22	2.0	22	86	0	61	13	29	29	27	1.94
35347499--35347532	18	1.9	18	88	5	52	29	17	11	41	1.85
35348786--35348888	28	3.7	28	85	0	143	27	34	13	24	1.93
35349101--35349154	16	3.4	16	85	12	76	11	11	24	53	1.68
35353924--35353998	22	3.3	22	66	23	64	32	13	29	25	1.93
35353871--35354189	47	6.6	47	90	3	431	32	12	28	26	1.93
35353972--35354094	23	5.2	25	60	25	68	30	13	31	24	1.93
35354157--35354386	48	4.8	48	93	1	379	32	6	27	32	1.84
35354541--35354685	37	3.9	37	94	0	245	23	19	31	25	1.98
35357253--35357286	18	1.9	18	88	5	52	29	17	11	41	1.85
35361543--35361945	47	8.6	47	95	0	682	29	29	8	33	1.87
35362454--35362507	22	2.5	22	79	11	65	12	16	27	42	1.85
35370457--35370568	27	4.1	27	83	7	129	14	24	24	37	1.92
35370457--35370568	54	2.1	54	86	3	154	14	24	24	37	1.92
35374059--35374090	16	2.1	16	88	11	50	31	37	9	21	1.85
35381631--35381853	49	4.6	49	76	6	179	22	29	19	28	1.98
35381630--35381815	98	1.9	97	86	3	266	22	30	19	28	1.98
35383289--35383368	30	2.7	30	92	0	133	20	13	25	41	1.88
35383292--35383389	30	3.3	30	86	2	108	21	14	22	41	1.89
35383376--35383485	29	3.8	29	76	2	94	19	16	27	37	1.93
35383406--35383629	30	7.5	30	68	10	145	19	15	21	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35383377--35383627	59	4.2	59	79	2	268	21	16	21	40	1.91
35383397--35383629	120	2.0	118	86	1	322	20	16	21	41	1.90
35383816--35383886	30	2.4	29	85	4	88	21	12	26	39	1.89
35406091--35406161	35	2.0	35	88	0	106	26	11	23	38	1.89
35407569--35407914	47	7.4	47	71	13	311	30	30	16	22	1.96
35407527--35407960	93	4.7	93	99	0	841	29	30	17	22	1.97
35407515--35407975	46	10.0	45	71	9	320	29	29	18	22	1.97
35411124--35411295	40	4.3	40	88	2	222	25	27	21	25	1.99
35411126--35411348	40	5.6	39	83	5	216	25	27	21	25	1.99
35411124--35411348	80	2.8	79	80	7	240	25	27	21	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313