genome.fa.s26.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  125  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40356991--40357055	25	2.5	26	75	10	69	60	6	7	26	1.48
40357099--40357235	59	2.3	59	79	10	145	60	5	5	29	1.40
40357152--40357263	20	5.5	19	72	16	73	64	1	5	28	1.26
40357153--40357229	23	3.4	23	80	8	70	61	2	5	31	1.32
40357546--40357604	21	2.8	22	80	7	61	22	0	8	69	1.15
40357575--40357622	26	1.9	24	87	8	69	29	0	6	64	1.18
40362982--40363034	25	2.1	26	86	6	74	13	18	9	58	1.61
40363484--40363522	20	2.0	20	89	0	60	76	7	0	15	0.99
40363543--40363601	9	6.6	9	82	0	64	27	6	22	44	1.78
40363543--40363602	18	3.3	18	80	0	75	26	6	21	45	1.77
40363757--40363806	24	2.1	24	88	0	73	24	6	44	26	1.76
40373750--40373793	22	2.0	22	86	0	61	52	4	20	22	1.65
40378401--40378464	31	2.1	31	93	0	110	37	15	7	39	1.77
40380632--40380668	19	1.9	19	89	10	58	62	0	0	37	0.96
40384054--40384100	18	2.5	19	82	6	60	46	8	12	31	1.72
40385178--40385291	54	2.1	54	88	3	167	34	22	22	20	1.97
40385160--40385291	27	4.9	26	76	10	124	34	21	23	21	1.97
40387440--40388025	87	6.8	87	75	11	345	26	21	20	31	1.98
40387475--40388025	44	12.8	44	71	11	378	26	21	20	31	1.98
40387516--40388025	214	2.4	214	97	1	952	26	21	20	31	1.98
40396692--40396767	38	2.0	38	97	0	143	26	22	26	25	2.00
40399728--40399956	44	5.2	44	67	11	128	26	24	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40399659--40400012	132	2.7	132	90	0	546	27	24	19	29	1.98
40400925--40401056	69	1.9	68	90	4	212	27	17	18	35	1.94
40402272--40402312	20	2.0	20	90	9	66	65	4	14	14	1.42
40405600--40405663	9	6.8	9	76	13	58	67	1	3	28	1.15
40405604--40405663	3	19.7	3	76	10	50	66	1	3	28	1.17
40405601--40405663	21	3.1	21	75	11	69	66	1	3	28	1.16
40406254--40406315	29	2.1	30	81	3	72	77	1	8	12	1.06
40406937--40407424	89	5.5	89	96	0	845	28	25	16	29	1.97
40421273--40421330	30	1.9	30	85	0	80	12	31	37	18	1.88
40422793--40422831	3	13.3	3	94	5	71	69	0	0	30	0.89
40425156--40425191	16	2.2	16	100	0	72	25	0	36	38	1.56
40425172--40425262	45	2.0	45	85	2	121	27	6	28	37	1.82
40425427--40425461	18	2.0	17	88	5	52	54	0	0	45	0.99
40429651--40429677	13	2.1	13	100	0	54	37	0	7	55	1.28
40433012--40433220	104	2.0	104	99	0	409	31	10	12	45	1.76
40441876--40442536	264	2.5	264	89	2	1008	27	24	19	28	1.99
40441876--40442536	132	5.0	132	88	1	880	27	24	19	28	1.99
40446723--40446773	22	2.3	22	100	0	102	17	19	29	33	1.95
40447255--40447512	132	2.0	132	97	0	489	30	18	23	27	1.98
40448533--40448570	19	1.9	19	89	5	58	57	5	10	26	1.53
40449438--40449482	22	2.0	22	86	0	63	20	22	46	11	1.81
40450678--40450847	84	2.0	84	93	0	286	24	14	17	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40451290--40451325	19	2.0	17	89	10	54	13	11	13	61	1.58
40451292--40451325	18	1.9	17	88	5	50	14	11	11	61	1.56
40452856--40452915	27	2.1	29	81	6	70	61	5	5	28	1.38
40453595--40453620	9	2.9	9	100	0	52	76	0	11	11	1.01
40454809--40454931	62	2.0	62	95	0	219	24	22	17	34	1.96
40455007--40455038	17	1.9	16	93	6	55	46	0	0	53	1.00
40459440--40459528	45	2.0	45	97	2	171	29	14	24	31	1.95
40464730--40464785	25	2.2	24	79	14	60	58	5	5	30	1.42
40466393--40466422	15	2.0	15	93	0	51	30	13	0	56	1.37
40471882--40471914	16	2.0	17	88	5	50	30	0	3	66	1.06
40472503--40472573	3	23.7	3	88	0	106	33	1	29	35	1.67
40472948--40472992	15	2.7	17	83	10	58	62	4	26	6	1.39
40472949--40473001	15	3.3	15	78	7	52	58	3	28	9	1.47
40486240--40486274	18	1.9	18	94	0	61	28	28	0	42	1.56
40486694--40486822	49	2.6	49	96	1	240	44	2	8	44	1.47
40488960--40489004	20	2.2	21	80	11	58	35	4	2	57	1.31
40489352--40489392	12	3.3	12	96	3	73	41	0	0	58	0.98
40492501--40492559	29	2.1	28	81	6	66	27	13	16	42	1.86
40492566--40492634	25	2.8	25	95	0	120	18	34	24	21	1.96
40502244--40502268	6	4.2	6	100	0	50	48	0	0	52	1.00
40502838--40502876	18	2.2	18	100	0	78	20	12	15	51	1.76
40507809--40508117	96	3.2	96	86	3	408	38	17	1	42	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40518174--40518223	22	2.3	23	80	16	63	34	10	2	54	1.45
40518431--40518480	22	2.3	22	79	3	57	64	2	4	30	1.23
40521892--40521940	24	2.1	23	88	3	71	16	0	32	51	1.45
40523547--40523585	18	2.2	18	85	0	51	41	43	2	12	1.56
40523693--40523732	9	4.4	9	87	0	53	27	7	20	45	1.78
40531028--40531151	62	2.0	62	95	0	221	54	6	25	14	1.64
40531795--40531951	48	3.1	48	61	19	111	21	8	19	50	1.74
40531755--40531972	104	2.1	104	97	1	411	23	9	19	47	1.78
40535305--40535351	23	2.1	22	84	4	58	34	0	2	63	1.06
40545179--40545227	25	1.9	26	83	4	64	69	6	6	18	1.31
40545356--40545406	15	3.5	15	71	15	52	52	13	9	23	1.70
40552680--40552723	17	2.6	17	83	13	56	63	9	2	25	1.35
40553105--40553236	54	2.4	54	84	1	174	28	18	28	25	1.98
40553101--40553236	55	2.5	55	84	1	184	27	17	29	25	1.98
40553792--40553851	21	2.8	21	79	5	66	38	5	3	53	1.39
40558998--40559054	30	1.9	30	100	0	114	38	24	3	33	1.73
40560421--40560450	15	2.0	15	93	0	51	63	0	6	30	1.20
40563239--40563469	36	5.5	45	72	19	214	36	12	20	29	1.90
40563239--40563472	82	2.9	82	91	1	375	36	12	21	29	1.91
40563620--40563691	35	2.1	35	97	0	135	36	19	25	19	1.95
40564998--40565114	58	2.0	58	98	0	225	39	9	8	42	1.68
40565316--40565449	68	2.0	68	98	0	259	45	14	16	23	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40566446--40566537	23	3.9	23	76	15	80	20	26	22	30	1.98
40567245--40567359	58	2.0	58	98	0	221	32	4	26	37	1.76
40576377--40576411	15	2.2	16	90	5	54	62	2	8	25	1.38
40576511--40576628	60	2.0	57	81	4	137	30	11	9	48	1.71
40577520--40577584	17	3.7	17	76	15	62	63	1	0	35	1.04
40577496--40577584	26	3.3	25	79	16	81	62	1	0	35	1.02
40577581--40577610	10	3.1	10	95	4	53	43	0	6	50	1.28
40578376--40578412	18	2.1	18	100	0	74	32	13	21	32	1.92
40580213--40580274	28	2.1	30	88	5	92	66	0	0	33	0.92
40580548--40580593	22	2.1	22	91	0	74	69	0	0	30	0.89
40583004--40583107	54	1.9	53	86	0	136	25	17	25	29	1.97
40587384--40587527	76	1.9	76	100	0	288	39	6	23	29	1.81
40594614--40594653	17	2.4	17	86	0	53	20	7	15	57	1.61
40597977--40598008	15	2.1	16	94	5	57	37	0	0	62	0.95
40598121--40598162	15	2.7	15	88	3	57	69	0	0	30	0.89
40603880--40604061	79	2.3	79	79	5	192	31	24	6	37	1.80
40603988--40604272	146	2.0	146	86	5	398	30	29	8	31	1.86
40604237--40604460	78	2.9	77	78	9	240	29	27	8	34	1.86
40607437--40607489	26	2.0	26	92	0	88	22	32	1	43	1.64
40607467--40607690	79	2.8	79	78	5	247	29	27	10	33	1.90
40610170--40610199	4	7.5	4	92	0	51	50	3	0	46	1.18
40627053--40627093	21	2.0	21	85	9	57	51	0	2	46	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40627214--40627270	26	2.2	26	93	0	96	61	5	7	26	1.43
40627214--40627281	26	2.6	26	86	4	93	61	4	7	26	1.41
40629317--40630698	122	11.3	122	84	2	1738	31	17	17	33	1.94
40630611--40631111	91	5.5	91	86	1	637	28	18	18	34	1.95
40630613--40631107	273	1.8	273	88	0	758	28	17	18	34	1.95
40631667--40631999	172	1.9	170	90	1	522	30	8	17	43	1.78
40657854--40657911	30	1.9	30	85	0	80	29	5	17	48	1.68
40658644--40658842	99	2.0	99	89	0	299	37	15	12	35	1.85
40659915--40659954	11	3.5	11	80	6	53	35	22	7	35	1.82
40659924--40659962	12	3.3	12	78	7	53	38	20	7	33	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313