genome.fa.s26.2.7.7.80.10.50.1000.299.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  299  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91931970--91931998	11	2.7	11	94	5	51	68	0	3	27	1.05
91932697--91932768	19	3.8	19	75	14	69	40	1	2	55	1.23
91938633--91938816	50	3.7	50	88	1	271	21	31	21	25	1.98
91943149--91943390	50	4.8	50	86	2	297	21	30	21	25	1.99
91943149--91943390	100	2.4	100	88	2	342	21	30	21	25	1.99
91950335--91950620	50	5.7	50	89	0	410	20	31	22	25	1.98
91954808--91954986	80	2.2	81	83	2	211	48	25	11	15	1.78
91954827--91954986	40	4.0	40	85	0	205	46	25	12	15	1.81
91957626--91957696	37	1.9	37	91	5	117	25	15	21	38	1.92
91962487--91962530	23	1.9	22	82	17	54	36	25	0	38	1.56
91962574--91962667	45	2.1	45	84	4	118	30	23	19	26	1.98
91962669--91962800	51	2.6	51	83	4	151	33	27	16	22	1.96
91980491--91980556	24	2.8	24	83	4	71	40	10	10	37	1.74
91984048--91984089	21	2.0	21	100	0	84	33	14	14	38	1.86
91985522--91985552	9	3.3	9	95	4	53	58	0	0	41	0.98
91985931--91986230	157	1.9	157	98	0	582	43	17	16	22	1.87
91995371--91995459	21	4.4	21	65	19	55	43	3	1	51	1.25
92004979--92005188	46	4.6	46	88	0	269	16	20	18	45	1.86
92004975--92005458	45	10.7	45	84	3	202	22	18	17	41	1.90
92005157--92005458	90	3.4	89	85	0	379	25	18	16	39	1.91
92005156--92005416	135	1.9	135	89	0	405	26	18	18	37	1.93
92006131--92006228	21	4.6	20	76	15	97	27	8	31	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92006138--92006228	45	2.0	45	95	0	164	28	7	29	34	1.85
92006138--92006206	24	3.0	24	77	10	90	27	7	28	36	1.84
92006548--92006572	12	2.1	12	100	0	50	48	8	0	44	1.32
92007560--92007593	16	2.0	18	88	11	54	55	2	0	41	1.15
92015040--92015099	28	2.1	28	84	0	75	45	11	11	31	1.77
92019664--92019737	27	2.8	27	81	2	87	14	13	36	35	1.86
92024830--92024861	14	2.3	14	94	0	55	68	0	15	15	1.21
92029582--92029966	29	13.4	29	75	6	232	38	20	15	25	1.92
92029582--92029854	87	3.1	87	77	3	273	39	20	15	24	1.91
92029610--92029906	87	3.4	88	77	5	257	41	21	14	23	1.89
92044776--92044800	13	1.9	13	100	0	50	32	4	24	40	1.73
92048931--92049019	40	2.2	42	87	4	137	19	22	25	32	1.97
92048932--92048998	19	3.4	19	67	15	55	17	22	28	31	1.97
92051701--92051932	40	5.8	40	80	3	252	26	29	21	22	1.99
92051700--92051929	80	2.9	81	84	3	295	26	29	21	22	1.99
92051708--92051928	120	1.8	120	89	0	343	25	29	21	22	1.99
92051672--92051932	80	3.3	78	79	6	265	27	28	20	22	1.99
92056827--92056894	30	2.3	30	92	0	109	27	22	26	23	1.99
92058784--92058894	56	2.0	56	98	0	213	16	17	40	26	1.90
92064158--92064187	8	3.8	8	100	0	60	13	33	0	53	1.40
92066286--92066458	46	3.7	46	77	10	190	21	20	27	29	1.98
92066283--92066453	93	1.8	93	91	0	279	21	21	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92066683--92066720	19	2.0	20	85	15	53	36	0	23	39	1.55
92072369--92072426	28	2.1	28	93	0	98	39	13	24	22	1.90
92074526--92074730	39	5.3	39	88	1	297	19	20	28	31	1.97
92076443--92076590	73	2.0	73	100	0	296	37	9	21	31	1.86
92089453--92089501	18	2.7	18	83	0	62	42	2	22	32	1.65
92089549--92089583	18	1.9	18	94	0	61	68	0	22	8	1.16
92090148--92090215	34	2.0	34	100	0	136	41	2	11	44	1.56
92095222--92095261	21	1.9	21	85	10	55	22	2	7	67	1.28
92097256--92097320	34	1.9	34	96	0	121	30	29	7	32	1.85
92099575--92099607	13	2.5	13	100	0	66	33	33	27	6	1.81
92100516--92100596	43	1.9	42	85	7	110	32	24	17	25	1.97
92100528--92100620	42	2.2	43	78	5	100	34	25	13	25	1.94
92102765--92102792	13	2.2	13	100	0	56	46	10	21	21	1.81
92108161--92108375	55	4.0	54	81	6	220	22	24	15	37	1.93
92108163--92108379	54	4.0	54	81	2	238	22	23	15	38	1.92
92108361--92108482	47	2.6	47	89	0	181	28	25	11	34	1.91
92114374--92114581	53	3.9	54	80	6	215	22	24	16	36	1.94
92114385--92114573	55	3.5	54	80	7	206	21	24	17	36	1.95
92114560--92114681	47	2.6	47	94	0	226	27	24	12	36	1.91
92118404--92118491	44	2.0	44	95	0	158	28	19	10	42	1.84
92119370--92119638	46	5.8	46	76	11	271	24	20	26	28	1.99
92119416--92119584	47	3.6	47	79	10	220	24	20	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92119367--92119630	93	2.8	93	96	0	474	24	20	26	28	1.99
92124940--92125172	50	4.7	50	83	7	307	24	28	17	28	1.97
92124940--92125172	98	2.4	98	84	7	312	24	28	17	28	1.97
92128439--92128494	25	2.3	24	76	11	60	60	0	3	35	1.14
92128439--92128495	18	3.3	16	75	20	53	61	0	3	35	1.13
92128431--92128494	33	1.9	34	87	12	98	62	0	3	34	1.11
92128458--92128566	26	4.5	23	76	19	98	63	1	3	31	1.22
92128470--92128566	21	4.3	21	70	23	63	62	2	4	30	1.25
92128459--92128534	14	5.7	13	71	22	52	60	1	5	32	1.27
92128509--92128552	19	2.4	19	85	7	56	70	0	2	27	0.99
92128605--92128642	16	2.4	17	82	13	53	65	0	0	34	0.93
92128597--92128650	25	2.2	25	90	3	83	66	0	0	33	0.92
92130281--92130494	44	4.9	44	94	1	367	25	28	14	31	1.95
92131242--92131307	35	1.9	35	90	3	107	40	18	6	34	1.75
92152886--92153866	45	21.8	45	99	0	1908	42	17	19	20	1.90
92169766--92169825	30	2.0	30	90	0	93	30	25	8	36	1.85
92182746--92183006	45	5.8	45	92	2	418	43	15	19	21	1.88
92182796--92183060	45	5.9	45	88	3	182	42	16	19	21	1.89
92182746--92183042	135	2.2	135	86	3	375	43	15	19	21	1.88
92184308--92184344	19	1.9	19	94	0	65	29	10	2	56	1.47
92185119--92185171	18	2.8	18	83	13	54	66	18	1	13	1.34
92191123--92191315	44	4.6	43	81	5	211	36	22	15	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92195314--92195345	15	2.1	15	100	0	64	37	0	18	43	1.51
92195319--92195353	15	2.3	15	90	0	52	40	0	14	45	1.45
92195330--92195639	172	1.8	172	91	1	514	46	6	14	32	1.70
92197153--92197202	21	2.4	21	82	0	64	36	4	20	40	1.71
92206131--92206379	125	2.0	125	94	0	435	31	22	18	27	1.97
92206732--92206903	46	3.7	46	76	13	181	27	28	22	20	1.99
92206737--92206907	93	1.8	93	91	0	279	27	29	22	20	1.99
92207349--92207520	46	3.7	46	76	13	181	30	28	19	21	1.98
92207354--92207524	93	1.8	93	89	0	270	29	29	19	21	1.98
92206429--92207659	617	2.0	615	97	0	2300	30	25	14	28	1.95
92207944--92208003	30	2.0	30	90	0	93	30	25	8	36	1.85
92208295--92208354	30	2.0	30	90	0	93	30	26	6	36	1.82
92207723--92208424	351	2.0	351	97	0	1323	32	19	9	38	1.84
92215288--92215459	46	3.7	46	76	13	181	27	28	22	20	1.99
92215293--92215463	93	1.8	93	91	0	279	27	29	22	20	1.99
92215883--92215942	30	2.0	30	90	0	93	30	25	8	36	1.85
92220541--92220691	82	1.9	81	85	4	214	27	17	27	27	1.97
92220541--92220696	27	5.7	27	81	6	154	27	16	28	27	1.97
92220540--92220717	27	6.6	27	79	5	144	26	16	28	28	1.97
92220533--92220717	82	2.3	81	77	2	201	27	16	28	28	1.97
92224547--92224764	40	5.5	40	91	2	325	24	27	23	24	2.00
92233849--92233931	41	2.0	41	85	0	112	37	25	19	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92234708--92234732	10	2.5	10	100	0	50	24	0	8	68	1.16
92241527--92241551	10	2.5	10	100	0	50	76	16	8	0	1.02
92254786--92254948	82	2.0	82	96	0	299	28	21	29	20	1.98
92255038--92255269	116	2.0	116	97	0	437	28	12	19	39	1.88
92255289--92255465	89	2.0	89	97	0	336	49	15	6	28	1.70
92255759--92255904	73	2.0	73	94	0	256	39	29	10	20	1.85
92256597--92256779	92	2.0	92	95	0	330	43	25	9	20	1.83
92258345--92258464	58	2.1	57	81	7	136	45	6	20	27	1.76
92258450--92258482	12	2.6	13	90	4	50	63	0	18	18	1.31
92264242--92264310	35	2.0	34	91	2	111	23	30	10	36	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313