genome.fa.s26.2.7.7.80.10.50.1000.289.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  289  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88588386--88588735	143	2.5	141	92	1	574	32	8	30	29	1.88
88588853--88588931	37	2.1	37	88	4	115	25	18	30	25	1.98
88597013--88597120	45	2.5	41	80	7	117	21	17	29	31	1.96
88604015--88604108	40	2.3	41	82	7	113	27	17	28	26	1.97
88608679--88608727	20	2.5	20	83	10	64	55	24	0	20	1.44
88612186--88612281	43	2.2	43	88	3	149	35	16	13	34	1.88
88616927--88617123	39	5.1	39	88	3	290	21	22	30	24	1.98
88622570--88622694	24	5.2	23	90	2	169	28	18	21	31	1.97
88622745--88622783	20	2.0	20	100	0	78	30	20	12	35	1.90
88622746--88622790	20	2.2	20	92	0	72	31	22	13	33	1.92
88622827--88622876	25	2.0	25	88	0	73	26	16	24	34	1.95
88626791--88626950	43	3.8	43	78	9	168	31	26	16	25	1.97
88628085--88628113	14	2.0	15	93	6	51	51	20	0	27	1.47
88638948--88639031	42	2.0	42	97	0	159	21	15	33	29	1.94
88641640--88641665	11	2.4	11	100	0	52	15	23	30	30	1.95
88644325--88644536	50	4.2	50	86	2	309	43	20	10	25	1.83
88644611--88644766	41	3.9	41	69	13	108	33	27	18	19	1.96
88646892--88646963	36	2.0	36	94	0	126	40	18	16	25	1.91
88651953--88652210	50	5.2	50	90	0	408	41	21	10	27	1.85
88666929--88666969	17	2.4	17	100	0	82	34	24	4	36	1.77
88670213--88670383	93	1.8	93	91	0	279	28	27	21	22	1.99
88670208--88670380	46	3.7	46	76	10	190	29	26	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88677068--88677105	19	2.0	20	85	15	53	39	23	0	36	1.55
88678452--88678661	27	7.8	26	80	9	190	40	19	8	31	1.81
88678452--88678660	54	3.9	53	81	9	217	41	19	8	31	1.81
88678452--88678660	81	2.6	80	84	3	249	41	19	8	31	1.81
88678671--88678722	27	1.9	27	84	7	70	38	13	13	34	1.84
88678777--88678840	27	2.4	27	84	5	85	35	20	23	20	1.96
88679643--88679778	52	2.7	51	89	5	206	28	20	23	27	1.99
88679643--88679778	26	5.3	26	85	3	172	28	20	23	27	1.99
88679911--88680002	42	2.2	42	90	0	139	30	14	20	34	1.92
88680026--88680104	31	2.5	31	95	0	140	29	18	25	26	1.98
88681348--88681452	43	2.4	43	81	7	115	29	27	17	25	1.97
88682039--88682068	15	2.0	15	93	0	51	56	23	0	20	1.42
88693106--88693223	60	2.0	60	96	0	218	34	14	10	40	1.80
88695796--88695869	35	2.1	35	84	0	94	32	13	22	31	1.93
88698359--88698440	41	2.0	41	100	0	164	17	19	29	34	1.94
88701099--88701270	40	4.3	40	90	4	233	26	21	26	26	2.00
88701127--88701277	79	1.9	79	89	4	232	27	21	26	25	1.99
88712861--88713064	40	5.1	40	82	7	245	24	21	28	25	1.99
88712862--88713078	79	2.7	79	80	11	248	24	21	28	25	1.99
88720110--88720265	40	3.9	40	82	8	176	25	21	26	26	2.00
88720110--88720294	40	4.7	40	78	14	170	25	22	26	25	2.00
88720110--88720327	79	2.8	76	79	11	199	26	21	25	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88724377--88724457	35	2.3	35	84	0	99	29	16	18	35	1.92
88726297--88726351	29	1.9	28	88	3	83	18	21	27	32	1.96
88730127--88730224	43	2.3	43	94	0	169	28	14	24	32	1.94
88735829--88735984	57	2.7	57	100	0	312	35	12	20	32	1.90
88736047--88736090	20	2.2	20	95	0	79	47	15	4	31	1.66
88742509--88742654	27	5.4	26	81	4	148	36	19	18	24	1.94
88742510--88742640	54	2.4	54	87	0	172	37	19	17	25	1.94
88743373--88743434	31	2.0	31	84	9	81	20	25	19	33	1.96
88743306--88743667	98	3.7	98	96	0	636	20	26	20	31	1.98
88743471--88743532	31	2.0	31	84	9	81	20	25	19	33	1.96
88743569--88743630	31	2.0	31	84	9	81	20	25	19	33	1.96
88750277--88750422	27	5.4	27	82	3	177	35	19	20	24	1.95
88760183--88760468	47	6.1	47	99	0	563	32	10	29	27	1.90
88760407--88760531	63	2.0	63	85	0	169	33	8	29	28	1.87
88760650--88760728	37	2.1	37	86	4	106	25	16	31	26	1.96
88763674--88763741	28	2.4	29	85	2	93	57	7	5	29	1.50
88769364--88769388	13	1.9	13	100	0	50	60	16	0	24	1.36
88770444--88770480	18	2.1	18	100	0	74	56	0	16	27	1.40
88773069--88773101	14	2.4	14	90	10	50	39	0	0	60	0.97
88773231--88773279	25	2.0	25	91	0	80	36	16	16	30	1.91
88775721--88775809	28	3.3	27	76	10	85	33	12	25	28	1.92
88775836--88776035	51	3.9	51	92	1	330	32	13	24	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88780223--88780340	43	2.8	42	75	7	130	30	26	20	22	1.98
88781306--88781500	27	7.3	27	79	5	171	40	20	9	30	1.83
88781306--88781537	27	8.6	27	76	9	125	39	20	8	31	1.83
88781522--88781662	54	2.6	54	82	8	162	36	16	19	27	1.93
88781522--88781634	27	4.2	27	93	0	172	37	15	18	29	1.91
88781999--88782057	22	2.7	22	81	0	64	22	23	22	32	1.98
88782215--88782322	27	4.0	26	79	5	90	22	22	18	37	1.95
88782440--88782555	6	18.8	6	68	15	58	19	18	12	50	1.78
88782440--88782504	25	2.6	25	80	0	85	23	18	10	47	1.79
88782462--88782555	37	2.5	37	84	0	125	19	18	12	50	1.78
88800008--88800136	46	2.8	46	80	8	147	28	20	28	22	1.98
88800196--88800326	49	2.7	49	84	0	163	31	21	24	22	1.98
88803375--88803427	26	2.0	26	96	0	97	33	26	1	37	1.68
88804618--88804674	2	29.5	2	92	7	100	49	0	50	0	1.00
88804691--88804745	6	9.3	6	76	11	60	34	1	61	1	1.17
88804691--88804744	19	2.7	20	91	8	83	33	1	62	1	1.16
88805468--88805535	31	2.2	31	94	0	118	26	13	16	44	1.84
88805589--88805660	31	2.4	31	81	6	85	47	15	13	23	1.81
88812555--88812592	7	5.4	7	100	0	76	0	13	15	71	1.16
88830266--88830420	78	2.0	78	97	0	292	25	10	26	37	1.88
88836345--88836566	40	5.6	40	87	1	304	27	26	22	23	2.00
88839394--88839432	20	2.0	20	84	0	51	12	38	25	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88849748--88849817	27	2.6	27	95	2	113	31	28	12	27	1.93
88849748--88849845	28	3.5	28	90	2	135	31	28	13	26	1.94
88860416--88860494	37	2.1	37	85	0	104	26	30	18	24	1.98
88860615--88860741	47	2.7	47	82	2	148	26	31	9	32	1.88
88870602--88870716	29	4.0	29	81	10	121	31	26	13	27	1.94
88870926--88870968	8	5.4	8	85	0	50	9	23	18	48	1.76
88875165--88875249	28	3.0	28	84	6	118	28	29	14	28	1.95
88877053--88877203	80	1.9	80	97	0	284	50	3	16	29	1.61
88880115--88880170	28	2.0	28	96	0	103	26	8	28	35	1.87
88881717--88881890	46	3.8	46	75	13	167	22	17	28	31	1.97
88889669--88889852	67	2.8	66	79	7	221	51	9	13	25	1.70
88891605--88891969	48	7.6	48	87	1	437	26	28	18	26	1.98
88894854--88894905	27	1.9	27	92	0	86	32	26	17	23	1.96
88896469--88896535	29	2.3	29	82	5	82	28	28	13	29	1.94
88896357--88896684	174	1.9	174	95	0	593	31	24	14	30	1.94
88896644--88896715	29	2.5	29	81	0	90	30	30	12	26	1.93
88899027--88899473	224	2.0	224	99	0	876	32	24	17	26	1.96
88904696--88904960	40	6.7	40	86	3	293	26	27	21	24	1.99
88904663--88904960	80	3.7	79	79	8	266	25	27	21	25	1.99
88904892--88904969	40	1.9	41	82	10	97	26	28	20	24	1.99
88907693--88908135	221	2.0	221	99	0	868	26	27	16	29	1.97
88908935--88909419	245	2.0	245	94	0	844	26	26	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88915553--88915716	82	2.0	82	91	0	265	23	28	19	28	1.98
88916737--88916998	39	6.7	40	88	7	337	24	27	22	25	2.00
88921481--88921563	34	2.4	34	78	13	89	32	18	21	27	1.96
88923711--88923749	19	2.1	19	85	9	53	61	23	0	15	1.33
88924400--88924553	42	3.6	42	83	3	193	29	23	15	31	1.95
88927168--88927392	48	4.6	48	87	2	333	24	17	32	25	1.97
88927167--88927392	98	2.3	96	90	1	344	24	17	32	25	1.97
88929963--88930061	37	2.8	35	84	6	137	32	32	6	29	1.82
88929966--88930057	34	2.6	36	86	5	125	32	31	6	29	1.83
88951344--88951368	3	8.3	3	100	0	50	32	0	0	68	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313