genome.fa.s26.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  167  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52376715--52376778	32	2.0	32	82	14	78	28	25	1	45	1.63
52377991--52378056	35	1.9	34	87	9	98	39	7	1	51	1.40
52395865--52395891	5	5.4	5	100	0	54	40	0	18	40	1.51
52406822--52406978	77	2.0	78	97	1	298	33	11	12	42	1.78
52409542--52409586	21	2.2	21	84	11	58	73	0	6	20	1.05
52416381--52416427	18	2.4	19	86	10	60	51	4	0	44	1.21
52416391--52416441	18	2.8	18	85	5	59	52	7	0	39	1.30
52416378--52416436	19	3.1	19	82	7	66	52	6	0	40	1.28
52416463--52416518	20	3.0	19	82	7	62	67	5	5	21	1.31
52425065--52425122	26	2.2	26	96	0	107	43	10	12	34	1.76
52427194--52427292	27	3.6	27	70	20	96	51	21	14	13	1.75
52427703--52427733	14	2.2	14	94	0	53	32	19	9	38	1.84
52428415--52428459	23	2.0	23	100	0	90	37	8	0	53	1.32
52428524--52428606	27	3.1	27	78	0	103	26	19	42	12	1.86
52429994--52430030	17	2.2	17	100	0	74	45	8	16	29	1.76
52431339--52431375	19	1.9	19	89	10	58	10	5	0	83	0.79
52431377--52431445	28	2.5	29	88	6	108	47	0	10	42	1.37
52431482--52431521	19	2.2	18	90	4	62	70	5	0	25	1.08
52431482--52431532	18	2.7	19	87	3	68	66	7	0	25	1.18
52432243--52432343	38	2.7	38	89	9	145	1	29	0	68	1.01
52432273--52432328	10	5.8	10	72	16	55	1	33	0	64	1.04
52432345--52432385	18	2.2	19	86	4	57	65	7	0	26	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52432541--52432623	27	3.1	27	83	0	121	10	43	20	25	1.84
52432649--52432682	13	2.8	12	86	4	50	0	2	11	85	0.71
52433229--52433416	10	19.1	10	62	24	53	2	31	0	66	1.03
52433230--52433413	18	9.5	21	70	19	93	2	31	0	66	1.04
52433259--52433404	38	3.8	38	92	1	222	2	32	0	65	1.05
52433340--52433413	14	5.1	14	72	22	55	0	31	0	68	0.89
52433334--52433413	34	2.8	28	75	24	85	0	32	0	67	0.91
52433374--52433416	22	1.9	23	85	4	61	0	30	0	69	0.88
52433336--52433417	28	2.7	30	75	19	89	0	32	0	67	0.91
52433206--52433418	18	12.0	17	69	16	82	1	32	0	65	1.04
52433277--52433430	38	3.9	40	85	6	108	0	35	0	63	0.99
52433465--52433545	27	3.0	27	83	0	117	9	43	20	25	1.83
52433571--52433604	13	2.8	12	86	4	50	0	2	11	85	0.71
52433597--52433650	27	2.0	27	100	0	108	33	0	7	59	1.25
52434089--52434227	10	14.5	10	69	18	82	2	32	0	64	1.10
52434088--52434235	38	3.9	38	90	1	217	2	33	0	64	1.10
52434171--52434244	14	5.1	14	72	22	55	0	31	0	68	0.89
52434166--52434244	34	2.7	28	75	25	83	0	31	0	68	0.90
52434176--52434247	10	6.6	10	73	17	54	0	31	0	68	0.90
52434205--52434247	22	1.9	23	85	4	61	0	30	0	69	0.88
52434167--52434248	28	2.7	30	75	19	89	0	32	0	67	0.91
52434172--52434249	18	4.5	17	78	15	72	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52434181--52434261	42	2.0	40	82	4	99	0	35	0	64	0.94
52434296--52434376	27	3.0	27	83	0	117	9	43	20	25	1.83
52434402--52434435	13	2.8	12	86	4	50	0	2	11	85	0.71
52433137--52434810	831	2.0	838	98	1	3218	24	20	10	43	1.83
52434428--52434481	27	2.0	27	100	0	108	33	0	7	59	1.25
52443366--52443564	56	3.7	56	84	6	250	27	21	26	24	1.99
52443813--52443851	12	3.2	12	85	0	51	51	5	23	20	1.67
52445803--52445829	13	2.1	13	100	0	54	44	7	11	37	1.68
52446924--52447107	48	3.8	48	79	6	165	31	19	28	20	1.97
52447799--52447850	20	2.8	18	78	21	63	51	3	1	42	1.31
52452415--52452467	24	2.2	25	80	16	67	50	3	22	22	1.64
52456158--52456197	12	3.3	12	96	0	71	35	20	0	45	1.51
52456158--52456197	6	6.7	6	91	0	62	35	20	0	45	1.51
52456396--52456434	6	6.5	6	100	0	78	33	0	15	51	1.44
52465447--52465515	34	2.0	34	88	5	104	42	31	11	14	1.82
52469994--52470024	16	1.9	16	93	0	53	41	3	0	54	1.16
52479259--52479312	16	3.4	16	79	5	65	59	0	18	22	1.38
52488095--52488185	44	2.1	44	89	4	139	50	9	7	31	1.64
52490052--52491260	604	2.0	604	99	0	2391	39	10	17	31	1.84
52492064--52492186	46	2.7	46	96	0	219	34	15	19	30	1.93
52492558--52492625	9	7.4	9	80	9	66	22	10	26	41	1.85
52492811--52492969	51	3.4	45	81	12	205	32	15	22	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52495316--52495349	16	2.1	17	88	5	52	8	5	8	76	1.15
52496066--52496143	27	3.0	26	79	7	86	37	7	6	48	1.57
52496189--52496222	14	2.4	14	100	0	68	32	0	0	67	0.91
52497699--52497773	28	2.6	28	85	8	89	49	1	0	49	1.09
52498263--52498317	29	2.0	27	86	13	76	47	0	5	47	1.25
52499267--52499305	17	2.1	19	86	13	55	56	2	0	41	1.13
52501907--52501991	42	2.2	40	79	10	95	42	8	9	40	1.67
52504776--52504853	39	2.0	39	92	0	129	51	7	7	33	1.59
52512699--52512736	17	2.2	18	86	13	53	42	0	10	47	1.38
52513253--52513309	18	2.9	21	77	17	59	31	24	12	31	1.92
52534365--52534565	103	2.0	103	86	2	287	30	15	19	33	1.94
52541503--52541528	12	2.2	12	100	0	52	38	11	7	42	1.70
52554997--52555054	28	2.1	28	96	0	107	63	12	6	17	1.49
52556941--52556977	18	2.1	18	100	0	74	72	5	5	16	1.21
52560850--52560893	20	2.1	21	83	4	54	13	9	6	70	1.33
52560909--52560934	3	8.7	3	100	0	52	30	0	0	69	0.89
52561257--52561287	6	5.2	6	100	0	62	48	16	0	35	1.46
52561523--52561559	13	2.7	14	84	16	51	21	5	5	67	1.31
52567041--52567562	132	4.0	132	94	0	875	27	18	23	29	1.98
52568681--52568723	17	2.4	18	80	3	52	18	9	4	67	1.36
52569325--52569361	13	2.7	14	84	16	51	21	5	5	67	1.31
52575547--52575649	49	2.1	48	82	7	120	58	2	3	34	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52578347--52578380	16	2.1	16	88	0	50	41	2	20	35	1.68
52580243--52580271	14	2.0	15	93	6	51	27	27	0	44	1.54
52580509--52580602	48	2.0	48	82	0	116	34	20	13	31	1.92
52582356--52582481	43	2.9	42	75	14	114	24	18	26	30	1.98
52583456--52583706	23	10.7	23	82	5	279	27	11	19	41	1.86
52583465--52583706	71	3.4	71	86	2	319	26	12	19	40	1.87
52583456--52583706	48	5.3	46	82	4	270	27	11	19	41	1.86
52586992--52587138	41	3.6	41	90	1	233	23	29	19	27	1.98
52587074--52587176	41	2.5	40	83	7	111	26	28	20	25	1.99
52587623--52587848	114	1.9	115	93	3	391	40	13	3	42	1.61
52590343--52590409	24	2.8	24	88	0	89	44	20	10	23	1.82
52590931--52590988	30	1.9	31	89	3	91	56	3	5	34	1.38
52591023--52591071	9	5.1	9	80	9	53	51	2	4	42	1.32
52591023--52591077	19	2.8	20	75	13	60	50	1	3	43	1.30
52591023--52591082	20	3.0	20	73	4	59	55	1	3	40	1.27
52591390--52591437	21	2.3	21	85	7	62	62	0	2	35	1.07
52592797--52592831	16	2.2	16	90	10	54	77	11	11	0	1.00
52594329--52594425	49	2.0	49	82	11	119	40	11	1	47	1.46
52596584--52596617	16	2.1	16	94	0	59	11	35	0	52	1.38
52605651--52605688	19	2.0	20	84	5	51	47	0	5	47	1.24
52613643--52613696	28	1.9	28	100	0	108	59	7	0	33	1.25
52613752--52613809	27	2.1	28	87	3	82	24	25	29	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52613852--52614028	4	43.8	4	70	18	102	67	0	31	0	0.95
52613858--52613924	27	2.6	25	79	11	73	62	1	35	0	1.04
52613855--52614032	39	4.5	39	75	17	136	67	0	32	0	0.95
52613843--52614023	40	4.4	42	78	15	175	66	0	33	0	0.96
52613928--52614015	29	3.1	28	81	10	99	70	0	29	0	0.88
52613849--52614001	70	2.2	69	78	14	161	66	0	33	0	0.97
52613853--52614059	82	2.5	83	82	10	239	67	0	31	0	0.94
52613852--52614028	44	4.1	44	76	14	161	67	0	31	0	0.95
52613941--52614034	18	5.1	18	73	15	77	70	0	29	0	0.88
52619687--52619717	12	2.6	12	94	0	53	61	19	0	19	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313