genome.fa.s26.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  169  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52842034--52842058	11	2.3	11	100	0	50	16	28	8	48	1.74
52842038--52842074	11	3.2	12	88	7	51	27	18	5	48	1.70
52844131--52844155	11	2.3	11	100	0	50	16	28	8	48	1.74
52844135--52844171	11	3.2	12	88	7	51	27	18	5	48	1.70
52845988--52846030	18	2.4	18	88	0	59	18	27	9	44	1.80
52846571--52846624	13	4.0	14	85	7	76	40	40	1	16	1.59
52846571--52846624	20	2.7	20	88	2	81	40	40	1	16	1.59
52846571--52846624	7	8.0	7	85	6	76	40	40	1	16	1.59
52846612--52846676	22	3.0	22	84	2	96	43	29	0	27	1.56
52846717--52846772	22	2.6	21	91	5	94	42	33	0	23	1.54
52849805--52850248	126	3.5	125	88	1	620	29	22	17	30	1.97
52852802--52852827	6	4.3	6	100	0	52	19	15	15	50	1.79
52853461--52853498	20	1.9	20	88	0	58	47	2	34	15	1.60
52855401--52855438	20	1.9	19	89	5	58	76	10	5	7	1.15
52864718--52864767	21	2.3	23	76	16	61	68	2	6	24	1.23
52886597--52886646	6	8.3	6	86	0	64	16	26	0	58	1.38
52886597--52886646	18	2.8	18	87	0	73	16	26	0	58	1.38
52887622--52887659	17	2.2	17	95	0	67	28	13	13	44	1.81
52889767--52889802	12	2.9	12	87	4	54	77	0	11	11	0.99
52890608--52890662	18	3.1	18	84	5	58	25	9	9	56	1.60
52890680--52890714	18	1.9	18	88	0	52	20	8	14	57	1.63
52893662--52893698	20	1.9	20	94	5	67	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52893662--52893691	7	4.1	7	91	8	51	40	0	0	60	0.97
52893647--52893699	16	3.3	17	73	21	51	37	0	1	60	1.08
52894467--52894557	37	2.5	37	80	7	96	42	3	21	31	1.69
52896121--52896164	22	2.0	22	90	0	70	9	18	27	45	1.79
52896226--52896291	21	3.1	21	77	12	64	4	43	15	36	1.67
52896240--52896299	21	2.9	20	74	16	59	3	43	16	36	1.65
52896361--52896548	43	4.4	43	86	1	234	18	18	32	30	1.95
52896389--52896568	86	2.1	86	82	6	213	20	20	31	27	1.98
52896554--52896715	87	1.9	87	84	5	220	30	32	17	19	1.95
52896540--52896740	43	4.6	42	80	6	197	30	32	16	19	1.95
52896877--52896906	9	3.2	9	90	9	51	66	3	0	30	1.07
52902571--52902604	16	2.1	16	94	0	59	32	0	14	52	1.42
52902585--52902640	25	2.2	25	83	0	67	35	5	14	44	1.68
52902642--52902780	9	16.3	9	66	14	62	40	2	16	41	1.60
52902746--52902778	16	2.1	16	100	0	66	30	0	24	45	1.53
52902664--52902821	84	1.9	84	82	2	201	41	2	13	42	1.57
52902770--52902955	56	3.2	56	75	14	189	40	3	10	45	1.55
52902804--52902859	22	2.6	22	88	5	80	42	0	10	46	1.38
52902770--52902890	51	2.3	54	84	9	151	40	3	10	45	1.55
52902826--52902975	31	4.8	30	78	13	137	39	2	11	47	1.51
52902826--52902975	65	2.4	60	87	5	201	39	2	11	47	1.51
52904644--52904762	44	2.7	44	100	0	238	44	14	10	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52904643--52904789	44	3.3	43	91	3	188	46	12	10	30	1.75
52905774--52905820	22	2.2	21	85	11	60	12	8	0	78	0.95
52906985--52907436	113	4.0	113	90	0	699	30	23	23	23	1.99
52907352--52907527	91	1.9	91	89	2	273	32	24	23	19	1.98
52907554--52907663	40	2.8	40	76	1	114	21	21	18	38	1.94
52915473--52915509	19	1.9	19	100	0	74	54	10	5	29	1.57
52919097--52919135	6	6.5	6	93	0	69	15	0	2	82	0.79
52919986--52920025	21	1.9	21	84	0	53	20	5	10	65	1.42
52921434--52921699	103	2.6	104	90	3	419	19	20	29	29	1.97
52924761--52924807	23	2.0	23	87	0	67	31	23	4	40	1.74
52925161--52925244	36	2.3	36	91	0	141	46	26	9	17	1.79
52925161--52925263	36	2.9	36	84	5	111	48	24	8	18	1.76
52925580--52925633	3	18.3	3	80	3	56	1	37	0	61	1.07
52929812--52929837	7	3.7	7	100	0	52	42	15	30	11	1.82
52946563--52946646	43	2.0	43	85	4	116	19	13	13	54	1.70
52954351--52954594	54	4.6	54	76	8	200	23	13	16	45	1.84
52954355--52954558	27	7.8	27	72	10	129	24	13	17	45	1.83
52962384--52962452	33	2.1	34	83	2	86	28	21	23	26	1.99
52962560--52962635	26	3.0	25	80	1	89	40	19	18	21	1.91
52962594--52962652	27	2.2	26	81	3	64	42	23	16	16	1.89
52963890--52964258	27	13.8	27	78	5	340	18	16	18	46	1.85
52963890--52964266	79	4.7	79	81	5	384	18	16	18	46	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52969474--52969524	21	2.4	21	93	0	84	33	11	35	19	1.88
52970992--52971321	27	12.3	27	86	3	445	42	17	17	22	1.89
52971790--52971860	34	2.1	34	81	0	79	22	19	23	33	1.97
52974463--52974520	16	4.1	14	68	27	50	46	1	1	50	1.22
52974458--52974530	22	3.4	21	74	20	71	49	1	2	46	1.24
52974533--52974580	20	2.4	21	86	10	66	72	4	14	8	1.23
52975748--52975782	17	2.2	15	90	10	52	28	0	14	57	1.38
52981322--52981353	16	2.0	16	93	0	55	25	0	28	46	1.53
52983863--52983930	18	3.8	19	74	14	65	42	7	13	36	1.72
52991774--52991800	14	1.9	14	100	0	54	22	7	11	59	1.56
52997392--52997463	26	2.8	26	87	2	92	33	19	8	38	1.82
52997611--52997645	17	2.1	17	94	0	61	17	25	0	57	1.40
53002912--53002939	7	4.0	7	100	0	56	28	28	14	28	1.95
53004536--53004580	23	2.0	23	82	8	56	20	4	15	60	1.52
53008972--53009107	59	2.3	59	83	3	166	33	18	8	39	1.80
53010768--53010825	12	4.8	12	76	0	62	46	17	12	24	1.81
53010768--53010828	24	2.5	24	91	0	95	47	16	11	24	1.79
53012370--53012495	60	2.1	60	86	1	173	42	13	5	38	1.68
53012685--53012714	15	2.0	15	93	0	51	23	6	0	70	1.11
53016811--53016844	17	1.9	17	88	5	50	44	5	5	44	1.52
53016906--53016938	11	3.1	11	86	4	50	69	18	0	12	1.18
53017427--53017537	24	4.7	24	81	7	86	56	9	3	29	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53017511--53017573	30	2.1	30	100	0	126	60	11	3	25	1.45
53020125--53020219	25	3.9	23	77	9	91	17	28	21	32	1.96
53020124--53020279	49	3.2	49	81	8	131	19	28	19	32	1.96
53020140--53020255	25	4.8	24	73	11	92	19	28	19	31	1.97
53021162--53021329	83	2.0	87	83	4	218	25	21	23	29	1.99
53021828--53021864	15	2.5	15	100	0	74	29	18	27	24	1.98
53027000--53027163	49	3.3	48	81	8	145	18	25	20	36	1.94
53027049--53027164	24	4.7	25	76	12	116	18	25	19	35	1.95
53027038--53027164	49	2.6	48	86	8	159	18	25	19	35	1.95
53027049--53027210	25	6.6	25	75	11	129	22	25	19	32	1.97
53029766--53029847	34	2.4	34	83	0	110	45	15	8	30	1.76
53034237--53034275	15	2.6	15	95	0	69	43	12	0	43	1.42
53045426--53045542	56	2.1	56	79	9	123	49	0	4	45	1.27
53045501--53045541	14	2.7	15	88	11	57	51	0	0	48	1.00
53045984--53046025	18	2.3	18	95	4	75	30	0	11	57	1.35
53056832--53057122	96	3.1	96	97	1	550	48	9	14	27	1.75
53065179--53065217	18	2.2	18	85	0	51	48	7	5	38	1.54
53065676--53065709	13	2.8	12	86	8	50	70	0	17	11	1.16
53074713--53074833	60	2.0	60	100	0	242	39	23	13	23	1.90
53088035--53088142	15	7.2	15	69	12	87	25	23	7	44	1.79
53088035--53088149	30	3.8	30	97	0	212	24	23	6	45	1.77
53092718--53092811	30	3.1	30	93	1	152	25	25	6	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53092728--53092805	15	5.2	15	70	11	70	25	23	7	43	1.80
53093138--53093182	23	1.9	23	90	4	72	42	0	2	55	1.12
53096208--53096232	7	3.6	7	100	0	50	48	0	0	52	1.00
53104326--53104398	27	2.8	25	83	6	74	45	1	0	53	1.09
53104690--53104727	18	2.1	19	85	9	53	60	18	2	18	1.48
53105172--53105225	23	2.2	23	83	9	63	24	1	12	61	1.42
53106854--53106886	15	2.2	15	100	0	66	60	12	0	27	1.32
53106894--53106932	13	3.2	12	86	13	53	74	7	2	15	1.15
53107416--53107474	28	2.1	28	81	12	68	74	1	3	20	1.05
53108838--53108981	40	3.3	40	69	25	121	28	22	20	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313