Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  163  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51224506--51224661
45
3.3
45
86
5
186
20
17
19
42
1.90
51224641--51224689
6
7.8
6
81
2
53
18
18
16
46
1.84
51234501--51234661
83
1.9
83
93
2
279
25
21
15
37
1.92
51234876--51234958
43
1.9
43
87
2
121
8
18
24
49
1.74
51247461--51247575
43
2.7
43
75
10
117
24
16
28
30
1.96
51249457--51249490
14
2.3
15
90
5
52
52
0
0
47
1.00
51249616--51249651
16
2.2
17
90
5
56
47
0
8
44
1.33
51250005--51250324
159
2.0
159
92
0
532
34
14
17
33
1.90
51271472--51271675
106
1.9
106
96
0
381
31
19
20
29
1.97
51272580--51272628
23
2.1
23
85
7
64
65
10
6
18
1.43
51272627--51272919
147
2.0
147
98
0
568
57
3
9
29
1.48
51276244--51276349
5
21.2
5
79
0
95
35
6
18
38
1.77
51276244--51276378
30
4.5
30
80
0
135
34
5
17
41
1.74
51277212--51277255
23
1.9
23
90
0
70
22
18
20
38
1.93
51277221--51277267
23
2.0
23
88
8
69
23
19
21
36
1.95
51278931--51279110
3
60.0
3
100
0
360
33
0
33
33
1.58
51281126--51281249
43
2.9
42
77
4
131
29
29
17
24
1.97
51282260--51282295
18
2.0
18
88
0
54
50
11
22
16
1.77
51283665--51283706
6
7.5
6
89
10
63
85
0
0
14
0.59
51283663--51283706
21
2.0
21
91
8
70
86
0
0
13
0.57
51283950--51283975
11
2.4
11
100
0
52
84
7
7
0
0.77
51284777--51284822
21
2.2
21
84
0
56
30
34
0
34
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51284909--51284949
21
2.0
21
85
0
55
26
48
0
24
1.51
51285397--51285509
41
2.8
40
81
2
145
27
26
21
24
1.99
51285539--51285675
40
3.4
40
81
10
147
21
20
20
37
1.94
51294895--51294953
28
2.0
31
83
9
79
44
0
5
50
1.24
51295836--51295968
45
3.0
43
82
11
157
24
18
27
30
1.97
51297088--51297116
6
4.8
6
100
0
58
0
0
48
51
1.00
51298518--51298556
15
2.7
14
84
7
51
79
7
0
12
0.93
51299017--51299064
15
3.2
15
77
11
53
41
8
0
50
1.33
51301752--51301846
45
2.1
45
96
0
172
44
15
18
21
1.87
51315149--51315230
10
8.4
10
71
22
59
35
2
2
59
1.24
51315160--51315193
17
1.9
17
88
5
50
35
2
0
61
1.11
51317043--51317119
31
2.5
31
82
4
102
41
15
23
19
1.89
51320864--51320993
21
6.2
21
68
7
75
19
20
16
43
1.88
51320864--51320998
42
3.2
42
76
10
141
18
20
17
44
1.87
51320967--51321021
21
2.7
21
80
5
60
9
20
25
45
1.80
51328576--51328670
42
2.2
43
83
1
120
17
21
16
44
1.87
51328576--51328690
43
2.7
43
82
1
124
18
20
17
44
1.87
51337115--51337165
8
7.0
8
78
17
58
60
9
0
29
1.28
51337117--51337157
15
2.9
15
79
13
52
60
7
0
31
1.24
51337204--51337319
9
13.8
9
70
13
86
44
20
2
31
1.65
51337179--51337319
16
8.1
18
71
12
64
43
19
3
32
1.68
51337224--51337290
25
2.7
25
85
0
80
47
22
2
26
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51338107--51338197
43
2.1
43
87
2
130
35
10
9
43
1.73
51338454--51338637
43
4.3
43
88
4
266
21
17
31
29
1.96
51343121--51343180
31
1.9
31
93
0
102
46
8
8
36
1.64
51350809--51350851
15
3.0
15
83
10
54
51
0
0
48
1.00
51350917--51351199
91
3.0
93
84
7
317
48
3
3
44
1.35
51351017--51351077
28
2.2
28
85
5
81
50
3
0
45
1.17
51351024--51351167
47
3.1
46
65
23
113
49
4
2
44
1.33
51350992--51351199
91
2.3
90
90
4
326
46
4
3
45
1.39
51351017--51351159
44
3.2
43
68
16
119
48
3
2
46
1.31
51351042--51351180
47
3.0
47
68
17
137
49
4
2
43
1.34
51355603--51355632
15
2.0
15
93
0
51
50
20
23
6
1.71
51365451--51365492
19
2.2
19
83
8
50
21
2
2
73
1.06
51365916--51365975
31
2.0
30
93
3
102
53
8
1
36
1.41
51367296--51367343
24
2.1
22
81
14
53
33
4
2
60
1.27
51367780--51367820
4
11.0
4
85
15
61
24
0
0
75
0.80
51367784--51367820
15
2.5
15
91
4
58
24
0
0
75
0.80
51367780--51367815
18
2.1
17
94
5
63
25
0
0
75
0.81
51374751--51374809
30
2.0
30
86
6
84
45
13
8
32
1.74
51385301--51385373
34
2.1
35
87
2
103
45
15
8
31
1.75
51386298--51386322
13
1.9
13
100
0
50
40
24
4
32
1.73
51393408--51393685
27
10.3
27
85
5
330
44
15
18
20
1.86
51393408--51393685
54
5.2
54
89
3
364
44
15
18
20
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51393408--51393685
81
3.4
81
88
2
407
44
15
18
20
1.86
51394046--51394128
30
2.8
30
90
3
125
22
24
25
27
2.00
51396078--51396112
15
2.3
15
95
0
61
42
17
8
31
1.79
51400447--51400490
23
1.9
23
90
0
70
36
20
11
31
1.88
51408694--51408899
94
2.2
92
86
1
286
42
5
12
39
1.67
51409705--51409758
11
5.5
10
75
16
51
33
0
3
62
1.12
51409705--51409763
29
2.0
29
84
12
77
33
0
5
61
1.18
51409713--51409758
18
2.4
18
85
7
56
34
0
4
60
1.16
51412855--51412910
19
2.6
23
75
16
66
37
0
5
57
1.22
51419654--51419740
41
2.1
41
91
0
138
25
17
12
44
1.83
51421314--51421354
16
2.5
17
80
8
57
68
2
0
29
1.03
51423971--51424131
83
1.9
83
97
0
304
30
21
22
25
1.99
51430881--51431202
109
3.0
108
90
2
479
34
16
16
32
1.91
51431257--51431306
15
3.3
15
83
10
57
68
4
8
20
1.32
51437628--51437714
5
16.4
5
70
19
52
4
21
1
72
1.09
51437627--51437681
4
13.5
4
78
14
51
1
21
1
74
1.01
51437631--51437709
29
2.7
30
75
16
76
3
22
1
72
1.08
51438520--51438549
10
3.0
10
90
0
51
10
13
0
76
1.01
51448888--51448958
27
2.7
27
82
2
81
33
14
19
32
1.92
51449237--51449306
34
2.2
31
89
7
104
31
22
24
21
1.98
51452013--51452037
7
3.6
7
100
0
50
28
0
40
32
1.57
51454708--51454755
25
1.9
25
86
0
69
25
22
4
47
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51458419--51458542
62
2.0
63
82
1
151
22
17
29
29
1.97
51477863--51477915
16
3.3
16
82
10
56
18
18
1
60
1.46
51481242--51481271
6
4.8
6
95
4
51
16
30
0
53
1.44
51490800--51490847
19
2.3
20
75
17
53
29
2
0
68
1.01
51491318--51491382
28
2.3
28
97
0
121
32
10
10
46
1.73
51494099--51494138
21
1.9
21
90
10
64
25
27
25
22
2.00
51494494--51494576
25
3.2
25
74
12
78
24
0
26
49
1.51
51498789--51498863
31
2.4
31
77
0
78
24
16
13
46
1.82
51498993--51499037
21
2.2
20
84
15
56
73
6
0
20
1.05
51499006--51499086
20
4.3
18
71
20
58
67
2
1
28
1.11
51499051--51499090
10
3.9
11
78
15
50
70
0
0
30
0.88
51499045--51499088
21
2.1
21
87
8
63
65
0
0
34
0.93
51499770--51499878
31
3.6
31
68
21
86
38
19
0
42
1.51
51500519--51500564
24
1.9
24
86
0
65
36
0
0
63
0.95
51501314--51501353
19
2.1
19
85
0
53
67
10
10
12
1.42
51504360--51504403
21
2.2
20
83
4
52
47
15
18
18
1.83
51508696--51508731
18
2.0
18
100
0
72
27
11
5
55
1.57
51514021--51514094
28
2.7
27
81
10
87
31
13
20
35
1.91
51514470--51514621
64
2.4
64
96
0
286
30
11
19
38
1.86
51522660--51522724
13
5.1
13
88
3
87
30
7
27
33
1.85
51524340--51524476
51
2.7
51
75
0
157
39
14
6
39
1.72
51526886--51527022
51
2.7
51
75
0
157
39
14
6
39
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51534286--51534532
123
2.0
123
100
0
494
25
16
21
37
1.93
51540364--51540396
15
2.1
16
88
5
50
42
9
6
42
1.61
51540609--51540716
38
2.8
40
73
11
107
64
5
0
28
1.22
51540615--51540733
10
12.6
9
73
15
89
63
3
0
31
1.16
51540655--51540733
19
4.1
19
80
15
74
62
3
0
34
1.14
51540564--51540733
39
4.4
38
74
14
120
60
5
1
32
1.27
51540658--51540743
10
8.9
10
75
17
51
60
3
1
34
1.21
51555850--51555880
11
2.8
11
95
0
53
19
48
3
29
1.64
51559219--51559287
34
2.0
34
100
0
138
21
11
14
52
1.73
51568221--51568258
18
2.1
19
90
5
60
52
5
21
21
1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313