genome.fa.s26.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  14  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4417852--4418011	57	2.8	57	83	7	200	23	0	36	39	1.60
4417895--4418000	7	14.9	7	78	6	79	23	0	40	34	1.61
4417888--4418045	57	2.8	56	82	8	185	22	1	38	37	1.63
4418475--4418733	73	3.2	80	73	12	246	35	12	23	29	1.91
4418362--4418816	152	3.0	149	79	9	490	37	13	21	27	1.91
4422602--4422661	30	2.0	30	81	12	70	51	3	3	41	1.35
4422946--4423339	9	45.4	9	70	11	139	46	15	1	36	1.54
4422949--4423330	130	2.9	130	83	5	437	46	15	1	36	1.54
4423066--4423321	94	2.8	89	82	9	313	46	15	1	37	1.53
4423094--4423250	33	5.0	31	73	13	99	49	13	1	35	1.53
4423030--4423321	94	3.3	85	80	11	305	45	15	1	37	1.53
4422918--4423330	224	1.8	224	100	0	826	46	15	1	37	1.53
4428450--4428478	14	2.1	14	93	6	51	34	0	10	55	1.34
4428887--4428943	21	2.7	21	80	0	69	29	17	47	5	1.70
4429325--4429544	43	5.2	43	82	8	193	27	30	19	23	1.98
4429325--4429544	81	2.6	82	80	9	232	27	30	19	23	1.98
4435389--4435443	20	2.8	20	100	0	110	10	27	38	23	1.88
4439237--4439262	13	2.0	13	100	0	52	38	7	15	38	1.76
4439571--4439667	29	3.5	29	76	13	89	71	0	2	26	0.97
4439626--4439706	20	4.2	20	71	14	64	70	1	3	24	1.11
4439957--4440103	10	15.4	9	70	14	73	27	2	2	67	1.15
4439945--4440050	19	5.5	19	72	10	72	25	2	2	68	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4439956--4440079	29	4.2	29	72	9	90	29	2	1	66	1.14
4440044--4440089	19	2.4	19	88	3	65	32	0	2	65	1.05
4443920--4443987	19	3.6	19	84	9	86	76	2	4	16	1.07
4443920--4443983	6	10.3	6	91	3	83	76	3	4	15	1.08
4443915--4443969	26	2.1	26	90	6	85	78	0	7	14	0.96
4445523--4445599	23	3.4	22	77	15	68	71	2	6	19	1.20
4471863--4471929	18	3.4	19	73	20	66	49	1	1	47	1.19
4471855--4471900	16	2.8	16	86	6	56	43	0	4	52	1.21
4478413--4478459	10	5.1	10	80	19	50	34	0	63	2	1.06
4478411--4478471	26	2.4	25	84	15	72	31	0	65	3	1.09
4478567--4478658	27	3.4	27	67	12	64	42	2	6	48	1.41
4478681--4478752	35	2.1	35	89	0	108	54	4	13	27	1.58
4494328--4494377	25	2.0	25	100	0	100	40	20	12	28	1.87
4500963--4501034	18	3.9	19	75	21	55	44	5	13	36	1.68
4513565--4513717	47	3.3	44	75	14	139	26	22	28	22	1.99
4513565--4513817	49	5.3	47	73	12	180	27	22	28	22	1.99
4514494--4514612	55	2.2	55	81	6	134	22	23	28	25	1.99
4534751--4534788	20	2.0	20	94	5	69	44	21	2	31	1.66
4537461--4537506	24	1.9	24	100	0	92	32	15	8	43	1.77
4539285--4539440	41	3.8	40	75	8	154	23	21	28	26	1.99
4548110--4548149	21	1.9	21	89	0	62	30	17	30	22	1.97
4552826--4552875	26	1.9	26	84	15	68	48	0	4	48	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4573112--4573339	121	1.9	120	85	5	316	29	17	10	42	1.82
4578385--4578447	28	2.2	29	85	2	83	52	7	11	28	1.65
4582137--4582226	44	2.0	44	100	0	180	28	21	8	41	1.83
4592338--4592402	20	3.3	18	77	12	58	53	1	1	43	1.19
4592949--4592978	2	15.5	2	93	6	53	46	0	0	53	1.00
4595237--4595276	14	2.9	13	82	10	53	30	0	15	55	1.41
4598794--4598842	25	2.0	25	83	0	62	32	8	20	38	1.82
4601736--4601785	21	2.4	21	93	0	82	44	24	14	18	1.86
4606991--4607084	48	2.0	48	84	0	125	45	9	13	30	1.76
4612652--4612690	6	6.5	6	100	0	78	33	15	0	51	1.44
4613764--4613807	18	2.4	18	80	0	61	29	25	15	29	1.96
4622412--4622632	46	4.8	46	89	2	300	38	14	24	21	1.91
4622404--4622632	93	2.5	92	85	3	307	39	14	24	21	1.91
4624914--4624946	16	2.1	16	100	0	66	48	27	12	12	1.76
4628291--4628316	2	13.0	2	100	0	52	50	50	0	0	1.00
4634947--4634980	13	2.6	13	100	0	68	35	0	5	58	1.22
4635367--4635421	17	2.9	19	75	22	62	38	1	5	54	1.34
4635367--4635442	11	6.8	11	69	19	50	39	1	3	55	1.27
4638208--4638468	46	5.6	47	76	16	235	28	20	27	22	1.99
4638208--4638427	93	2.4	93	100	0	440	28	20	28	22	1.99
4638210--4638518	46	6.7	43	74	14	163	27	19	29	23	1.98
4642018--4642135	57	2.1	57	90	3	184	50	19	5	23	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4642419--4642506	6	14.3	6	68	17	56	48	12	18	20	1.80
4642428--4642506	31	2.5	31	87	0	113	49	11	18	20	1.78
4642952--4643176	27	8.3	27	79	6	206	24	19	18	37	1.94
4642952--4643176	54	4.2	54	80	3	247	24	19	18	37	1.94
4642951--4643167	81	2.7	81	86	2	303	24	19	18	36	1.94
4643158--4643397	27	8.9	27	74	7	76	30	7	21	40	1.82
4643206--4643445	81	3.0	81	81	2	214	31	8	19	40	1.82
4643266--4643445	27	6.7	27	83	0	216	31	8	18	41	1.82
4643295--4643452	54	2.9	54	91	0	253	31	8	19	41	1.81
4644022--4644062	17	2.4	17	87	0	55	24	26	19	29	1.98
4648994--4649060	34	2.0	34	96	0	125	38	16	16	28	1.90
4650875--4650931	29	2.0	29	100	0	114	50	14	7	28	1.68
4655675--4655833	43	3.7	43	79	10	182	29	25	20	24	1.99
4659330--4659370	21	2.0	21	85	0	55	29	31	24	14	1.95
4661345--4661408	33	1.9	33	93	0	110	51	9	17	21	1.73
4661358--4661413	18	3.3	18	65	14	55	46	8	21	23	1.79
4671297--4671333	17	2.1	18	90	5	58	51	2	2	43	1.30
4679331--4679601	136	2.1	129	86	6	366	15	13	15	56	1.68
4679371--4679665	136	2.2	129	82	7	349	16	14	14	54	1.72
4679919--4680015	30	3.2	30	92	2	158	28	6	31	32	1.82
4681363--4681452	27	3.2	27	75	14	74	40	6	12	41	1.69
4682243--4682314	32	2.3	29	77	13	72	40	5	13	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4714156--4714207	21	2.5	21	93	0	86	30	38	9	21	1.85
4716080--4716107	11	2.5	11	100	0	56	82	0	0	17	0.68
4718501--4718537	18	2.1	18	94	0	65	48	8	0	43	1.32
4720890--4721065	49	3.6	48	78	6	187	24	26	20	28	1.99
4721086--4721300	46	4.6	47	77	6	186	22	26	20	30	1.98
4721092--4721300	94	2.2	94	87	1	285	22	26	21	30	1.98
4724104--4724139	18	2.0	18	88	0	54	25	22	13	38	1.91
4726337--4726513	46	3.8	46	79	3	149	29	17	25	27	1.98
4726524--4726650	49	2.6	50	83	2	150	30	20	26	22	1.98
4736673--4736854	49	3.8	48	81	5	179	25	29	19	26	1.98
4736673--4736854	98	1.9	97	84	3	249	25	29	19	26	1.98
4736879--4737270	46	8.3	48	72	9	299	25	27	19	27	1.99
4736879--4737273	94	4.2	94	93	0	603	25	27	20	27	1.99
4742749--4742828	15	5.4	15	76	7	74	11	18	12	57	1.64
4745209--4745384	46	3.8	46	74	15	164	22	19	27	30	1.98
4745203--4745375	93	1.9	93	88	0	265	23	19	27	29	1.98
4748226--4748347	22	5.3	22	62	21	61	25	29	11	33	1.91
4748219--4749259	47	22.1	47	97	0	1856	27	31	10	30	1.90
4750625--4750650	13	2.0	13	100	0	52	0	7	0	92	0.39
4750720--4750840	57	2.1	57	96	1	226	22	23	9	45	1.80
4765925--4766108	40	4.6	40	83	6	196	23	20	27	28	1.99
4765925--4766105	80	2.3	81	83	9	221	23	20	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4783364--4783444	41	2.0	41	85	0	108	30	16	33	19	1.94
4800117--4800226	55	2.0	55	89	0	166	18	22	3	55	1.58
4815091--4815126	17	2.1	17	94	0	63	41	25	5	27	1.77
4818682--4818718	19	1.9	19	88	0	56	18	40	18	21	1.91
4820276--4820384	44	2.5	44	87	4	148	31	31	18	19	1.96
4822491--4822566	27	2.8	27	73	0	71	35	17	19	27	1.94
4825962--4826024	27	2.4	27	89	2	92	42	15	19	22	1.88
4829624--4829703	40	2.0	40	97	0	151	27	33	10	28	1.89
4837921--4838015	27	3.5	26	84	8	127	38	21	23	16	1.92
4838012--4838072	27	2.3	27	97	0	113	29	13	21	36	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313