genome.fa.s26.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  174  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54087547--54087579	4	8.2	4	100	0	66	75	0	0	24	0.80
54089791--54089828	7	5.4	7	96	0	67	15	0	68	15	1.22
54092541--54092804	101	2.5	103	79	12	288	31	8	7	51	1.62
54101920--54101965	23	2.0	23	100	0	92	47	4	17	30	1.67
54105963--54106012	12	4.1	12	80	19	59	26	36	2	36	1.68
54107705--54107755	15	3.5	15	71	15	52	49	13	13	23	1.78
54110341--54110457	9	12.6	9	83	7	135	37	32	6	23	1.81
54110402--54110457	29	1.9	29	92	0	94	42	30	5	21	1.75
54110453--54110561	17	6.1	17	69	16	69	49	14	2	33	1.58
54110455--54110566	37	3.0	36	89	5	170	46	15	3	34	1.63
54110455--54110507	20	2.9	18	75	8	54	49	16	1	32	1.57
54113061--54113099	16	2.5	16	95	4	71	53	0	10	35	1.35
54113317--54113364	25	1.9	25	95	0	87	33	6	25	35	1.81
54116023--54116137	32	3.6	32	82	5	144	36	10	11	41	1.75
54120661--54120699	18	2.2	18	86	9	53	61	0	0	38	0.96
54120661--54120702	19	2.2	19	86	0	57	61	0	0	38	0.96
54120696--54120721	11	2.4	11	100	0	52	76	7	0	15	0.99
54122476--54122567	45	2.0	47	93	4	161	34	20	11	32	1.89
54134093--54134123	5	6.2	5	100	0	62	80	0	0	19	0.71
54139636--54139685	23	2.2	23	81	0	55	36	12	16	36	1.85
54139808--54139878	9	8.2	9	69	9	58	46	2	0	50	1.16
54139852--54139887	18	1.9	18	88	5	54	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54142185--54142228	17	2.6	16	82	13	52	38	2	0	59	1.10
54142185--54142239	18	3.1	18	77	15	60	43	1	0	54	1.10
54142185--54142240	9	6.3	9	76	10	53	42	1	0	55	1.10
54143225--54143279	21	2.7	21	83	5	60	29	5	0	65	1.15
54146426--54146512	43	2.0	43	100	0	174	32	16	11	40	1.84
54164633--54164668	19	1.9	18	88	5	54	72	2	8	16	1.21
54165132--54165189	25	2.3	24	82	5	71	41	1	1	55	1.20
54165188--54165224	19	1.9	19	88	0	56	35	2	0	62	1.10
54167886--54167945	28	2.1	28	87	0	84	25	18	13	43	1.86
54169772--54169819	17	2.9	17	90	3	71	27	0	18	54	1.44
54171037--54171218	46	4.0	46	92	0	292	36	9	25	29	1.87
54172884--54172976	38	2.4	38	90	0	141	37	16	12	33	1.86
54173136--54173198	22	2.7	23	72	16	58	25	20	15	38	1.92
54174849--54174895	17	2.8	17	79	20	55	36	2	0	61	1.08
54174796--54174910	52	2.2	52	80	9	117	35	5	1	57	1.31
54174989--54175046	28	2.1	27	83	3	71	37	8	0	53	1.32
54178247--54178285	3	13.0	3	100	0	78	66	0	0	33	0.92
54178559--54178602	11	4.0	11	82	11	54	31	0	6	61	1.22
54178573--54178611	13	3.2	12	85	14	53	33	0	2	64	1.08
54178560--54178616	11	5.0	11	77	8	51	38	0	3	57	1.16
54183031--54183114	41	2.0	41	97	0	159	32	9	13	45	1.75
54197971--54198189	27	8.1	27	86	0	222	15	15	38	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54198003--54198189	81	2.3	81	85	0	275	13	15	40	30	1.86
54198011--54198189	54	3.3	54	88	0	259	13	15	40	30	1.87
54202744--54202866	33	3.8	32	80	9	131	22	44	4	28	1.71
54202845--54202887	21	2.0	21	90	0	68	16	46	6	30	1.73
54202826--54202953	54	2.4	54	81	6	152	23	42	5	28	1.76
54209326--54210022	134	5.2	134	82	2	731	36	13	20	30	1.90
54210005--54210080	39	1.9	39	83	0	98	36	13	26	23	1.91
54232253--54232338	21	4.0	23	80	11	110	37	24	22	16	1.93
54232253--54232339	44	2.0	41	86	6	120	36	24	21	17	1.94
54232693--54232724	16	1.9	17	93	6	57	25	21	0	53	1.46
54236374--54236409	16	2.2	17	90	5	56	47	0	11	41	1.39
54243474--54243522	24	2.0	24	88	0	71	18	12	26	42	1.85
54247977--54248020	24	1.9	24	90	9	74	36	0	2	61	1.09
54248207--54248248	16	2.6	16	92	0	66	42	7	2	47	1.43
54248222--54248277	23	2.5	23	82	2	69	44	1	1	51	1.22
54248508--54248577	27	2.6	27	86	6	97	41	10	1	47	1.46
54248682--54248817	4	34.0	4	75	16	72	67	0	30	1	0.99
54248708--54248890	41	4.7	39	79	15	184	69	0	30	0	0.89
54248715--54248821	35	3.0	35	80	10	103	69	0	30	0	0.89
54248713--54248886	80	2.1	81	85	9	239	70	0	29	0	0.88
54252860--54253890	515	2.0	515	100	0	2062	29	23	16	30	1.96
54254786--54254830	18	2.5	18	88	0	72	15	48	6	28	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54255679--54255713	3	11.7	3	100	0	70	68	31	0	0	0.90
54255958--54256015	27	2.1	27	96	0	107	17	31	29	22	1.96
54256078--54256146	27	2.5	27	83	6	86	47	1	10	40	1.46
54256082--54256146	28	2.4	27	84	7	87	47	1	10	40	1.48
54257522--54257601	23	3.5	23	98	0	151	58	0	3	37	1.16
54260358--54260400	20	2.1	20	91	4	68	51	0	0	48	1.00
54261438--54261468	6	5.0	6	96	4	53	80	0	3	16	0.83
54266654--54266849	27	7.3	26	84	4	230	18	16	20	43	1.88
54266636--54266849	81	2.7	79	84	5	277	19	16	21	42	1.89
54273022--54273237	37	5.8	37	68	17	115	32	24	17	25	1.96
54272974--54273195	110	2.0	110	92	1	374	33	22	17	25	1.96
54273126--54273231	37	2.7	39	76	10	117	34	20	16	27	1.95
54274108--54274178	16	4.4	16	73	23	53	2	26	4	66	1.24
54274146--54274188	16	2.6	16	85	10	52	2	27	0	69	1.00
54283127--54283161	15	2.3	15	100	0	70	22	22	11	42	1.85
54292072--54292117	18	2.5	18	86	10	58	28	2	2	67	1.14
54292418--54292464	20	2.3	22	75	20	57	74	0	25	0	0.82
54297619--54297662	16	2.7	16	85	3	52	43	0	0	56	0.99
54297650--54297712	11	6.0	11	77	22	73	42	3	0	53	1.16
54297657--54297691	18	2.0	18	94	5	63	40	2	0	57	1.14
54297642--54297760	40	2.9	41	77	13	145	45	2	0	52	1.14
54297629--54297756	41	3.2	39	78	6	139	45	2	0	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54298074--54298123	18	2.7	18	81	15	57	32	0	8	60	1.26
54298553--54298612	30	2.0	30	100	0	120	36	10	23	30	1.87
54299743--54299825	20	4.1	20	81	10	89	40	0	4	54	1.22
54299733--54299830	10	9.5	10	66	20	51	39	0	4	56	1.19
54303085--54303200	27	4.3	27	81	1	126	22	18	16	42	1.89
54303127--54303209	27	3.1	27	74	10	80	22	18	20	38	1.93
54307949--54307973	11	2.3	11	100	0	50	84	0	0	16	0.63
54308045--54308076	2	16.0	2	100	0	64	50	0	50	0	1.00
54308243--54308296	15	3.6	14	73	11	54	14	0	31	53	1.41
54308256--54308319	29	2.2	30	82	2	76	18	1	31	48	1.58
54308349--54308405	30	1.9	29	82	3	69	21	1	19	57	1.49
54316401--54316428	5	5.6	5	100	0	56	17	0	0	82	0.68
54316954--54317272	160	2.0	161	84	3	419	37	16	13	31	1.88
54319325--54319366	17	2.5	17	80	7	50	28	0	7	64	1.20
54324508--54324603	42	2.3	42	83	1	113	27	22	20	29	1.99
54329249--54329300	24	2.2	24	89	0	77	55	9	1	32	1.43
54331428--54331463	18	2.0	18	100	0	72	27	16	16	38	1.90
54335691--54335759	31	2.3	30	82	7	77	43	20	11	24	1.85
54335791--54335832	21	2.0	20	86	4	57	33	21	23	21	1.97
54336298--54336362	12	5.6	12	75	14	64	23	7	12	56	1.61
54336296--54336353	28	2.1	28	86	0	80	20	6	12	60	1.54
54336379--54336413	12	2.9	12	91	0	52	20	8	17	54	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54336379--54336413	18	1.9	18	88	0	52	20	8	17	54	1.68
54336637--54336677	20	2.0	22	85	9	59	19	9	14	56	1.66
54338611--54338665	28	2.0	28	88	0	83	29	7	16	47	1.73
54339343--54339394	21	2.5	21	81	6	61	38	40	11	9	1.74
54339832--54339876	23	2.0	23	86	4	65	57	4	15	22	1.56
54341170--54341227	29	2.0	30	83	10	75	44	3	8	43	1.51
54349506--54349558	26	2.0	26	92	0	88	22	20	35	20	1.96
54353720--54353754	18	2.0	17	88	5	52	5	0	17	77	0.96
54357713--54357799	42	2.1	42	100	0	174	41	4	22	31	1.74
54360915--54360957	19	2.2	20	84	12	63	32	20	0	46	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313