genome.fa.s26.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  147  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46858663--46858748	27	2.9	29	82	14	106	15	23	30	31	1.95
46858586--46858952	103	3.6	102	88	3	513	18	20	28	32	1.96
46858764--46858816	27	1.9	28	96	3	99	16	24	32	26	1.97
46864955--46865007	23	2.3	23	93	0	88	64	5	13	16	1.47
46869843--46869896	5	10.8	5	100	0	108	59	0	0	40	0.98
46873690--46873866	46	3.8	46	93	0	300	29	22	9	38	1.86
46883430--46883489	30	2.0	31	83	3	77	20	38	0	41	1.52
46904195--46904246	21	2.4	22	84	12	72	61	3	0	34	1.14
46914046--46914086	3	13.7	3	100	0	82	31	0	0	68	0.90
46928413--46928451	15	2.6	15	83	0	51	5	33	25	35	1.78
46929011--46929048	17	2.4	17	87	12	55	44	0	0	55	0.99
46929013--46929079	26	2.6	25	77	13	73	41	0	1	56	1.08
46929053--46929145	17	5.6	17	71	14	79	39	1	2	56	1.18
46929772--46929837	22	3.0	22	82	6	73	42	18	21	18	1.89
46931734--46931807	28	2.6	29	75	12	80	62	2	4	31	1.28
46932041--46932074	15	2.2	16	94	5	61	55	5	0	38	1.24
46937154--46937187	18	2.0	18	88	11	54	52	14	0	32	1.42
46939033--46939088	29	1.9	29	82	7	69	48	7	0	44	1.30
46939662--46939713	20	3.1	16	77	20	52	21	0	1	76	0.87
46939670--46939713	10	4.5	10	82	2	54	22	0	2	75	0.92
46940731--46940792	4	15.5	4	75	21	51	72	0	4	22	1.03
46940724--46940792	8	8.9	7	75	20	57	71	0	5	23	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46947228--46947283	29	1.9	29	82	7	69	48	7	0	44	1.30
46955113--46955145	17	1.9	17	93	0	57	39	9	9	42	1.68
46955938--46956049	55	2.0	55	98	0	215	50	5	9	34	1.58
46956355--46956400	23	1.9	24	86	8	67	65	2	6	26	1.28
46961047--46961132	45	1.9	45	90	0	136	19	23	13	43	1.87
46961047--46961162	45	2.6	45	83	0	133	18	25	12	43	1.86
46964554--46964649	29	3.2	28	79	8	102	36	13	4	45	1.63
46966245--46966282	14	2.7	14	91	0	58	36	7	18	36	1.80
46969338--46969388	18	2.8	18	69	0	57	39	3	41	15	1.66
46970837--46970878	22	1.9	22	85	9	59	76	0	2	21	0.90
46973833--46973891	30	1.9	31	83	10	77	32	11	6	49	1.66
46981232--46981278	20	2.3	20	82	7	51	59	2	0	38	1.09
46988169--46988201	15	2.2	15	100	0	66	33	0	6	60	1.21
46988239--46988270	12	2.7	12	95	0	55	71	0	0	28	0.86
46988293--46988339	10	4.5	10	78	19	51	59	2	0	38	1.09
46988273--46988468	101	1.9	102	90	1	313	61	5	2	30	1.32
46988447--46988474	14	2.0	14	100	0	56	85	7	0	7	0.73
46991813--46991869	3	19.0	3	81	0	69	33	5	1	59	1.30
46991813--46991870	15	3.9	15	86	0	80	32	6	1	58	1.35
46991972--46991998	8	3.4	8	100	0	54	51	11	0	37	1.37
47004176--47004358	45	4.1	45	71	2	172	30	14	25	30	1.94
47004814--47004857	21	2.1	21	86	0	61	40	4	31	22	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47006666--47006731	3	22.0	3	77	0	69	33	6	3	57	1.38
47006858--47006890	11	3.0	11	91	8	50	27	3	0	69	1.03
47007896--47007921	2	13.0	2	100	0	52	0	50	0	50	1.00
47009145--47009175	16	1.9	16	93	0	53	54	3	0	41	1.16
47010159--47010201	11	4.2	10	86	13	61	18	2	9	69	1.26
47010159--47010201	21	2.1	20	87	12	61	18	2	9	69	1.26
47015040--47015070	11	2.8	11	95	0	53	29	3	48	19	1.64
47019124--47019180	18	3.2	18	92	0	96	31	17	24	26	1.97
47033912--47034443	266	2.0	266	96	0	992	23	24	18	33	1.97
47035479--47035543	32	2.0	32	100	0	130	43	12	15	29	1.83
47041447--47041509	30	2.1	30	93	0	108	25	3	14	57	1.52
47045557--47045593	18	2.1	18	89	0	56	51	13	8	27	1.69
47045736--47045786	25	2.1	24	96	3	93	21	7	11	58	1.58
47046015--47046074	31	1.9	32	86	3	86	13	11	6	68	1.39
47046199--47046230	16	2.1	16	94	5	57	50	0	0	50	1.00
47047621--47047693	37	2.1	37	82	12	91	50	0	0	49	1.00
47047687--47047729	21	2.0	21	82	8	52	76	2	9	11	1.10
47047717--47047783	4	17.0	4	73	17	52	71	1	23	2	1.08
47047715--47047783	18	3.8	18	70	12	61	72	1	23	2	1.06
47048450--47048496	24	2.0	24	84	16	62	31	0	17	51	1.46
47052157--47052217	12	5.0	13	76	7	58	70	8	0	21	1.13
47052180--47052217	15	2.5	15	91	0	58	68	7	0	23	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47056019--47056137	36	3.2	38	71	17	113	42	12	10	34	1.76
47056017--47056153	72	1.9	73	79	11	156	42	12	11	33	1.79
47056201--47056240	18	2.2	18	90	0	62	45	5	5	45	1.47
47056108--47056342	17	12.6	18	71	14	111	48	10	11	30	1.72
47063594--47063638	21	2.1	21	100	0	90	8	33	13	44	1.75
47067426--47067569	17	8.4	17	77	8	130	47	10	11	30	1.74
47067426--47067588	35	4.7	35	79	6	170	47	10	12	30	1.74
47075934--47075980	20	2.5	19	77	16	53	44	8	17	29	1.78
47076341--47076428	8	11.0	8	74	13	83	0	20	0	79	0.73
47076338--47076415	15	5.3	15	78	14	74	0	19	0	80	0.71
47076357--47076431	19	3.6	22	75	15	70	0	22	0	77	0.77
47076344--47076428	34	2.4	36	86	11	113	0	21	0	78	0.74
47076351--47076426	15	4.9	15	85	3	89	0	21	0	78	0.74
47076541--47076580	15	2.6	15	85	14	55	0	15	17	67	1.23
47076556--47076629	31	2.3	32	84	11	89	1	6	20	71	1.16
47076723--47076757	14	2.6	14	90	4	54	0	14	0	85	0.59
47076726--47076772	10	4.8	10	89	5	60	0	21	0	78	0.75
47076743--47076777	3	11.3	3	87	6	52	0	28	0	71	0.86
47077129--47077239	30	3.7	29	77	12	91	45	2	23	28	1.67
47077144--47077239	30	3.2	30	85	2	131	44	3	23	28	1.68
47086103--47086128	3	8.7	3	100	0	52	0	34	0	65	0.93
47087322--47087379	27	2.1	27	93	0	98	43	12	12	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47089431--47089469	18	2.2	18	90	0	60	33	25	17	23	1.96
47089601--47089671	2	35.5	2	100	0	142	50	0	49	0	1.00
47092171--47092227	26	2.2	26	87	0	78	57	0	1	40	1.09
47098671--47098705	16	2.1	17	94	5	63	17	0	11	71	1.14
47098665--47098707	15	2.8	16	86	13	63	20	0	11	67	1.22
47098681--47098741	22	2.8	22	70	9	61	24	0	9	65	1.23
47103437--47103489	9	6.0	9	80	4	54	35	13	35	15	1.86
47103920--47103967	23	2.0	24	81	18	57	37	0	8	54	1.31
47104112--47104153	9	5.1	9	88	11	56	57	11	0	30	1.35
47105161--47105220	29	2.1	28	84	6	77	48	16	11	23	1.79
47105442--47105483	16	2.6	16	96	0	75	45	4	2	47	1.36
47105457--47105518	22	2.7	23	90	5	90	48	3	1	46	1.28
47107928--47107988	30	2.0	31	87	3	88	37	13	6	42	1.70
47111126--47111158	16	1.9	18	88	11	52	24	0	12	63	1.28
47113616--47113685	24	3.0	23	80	15	81	61	1	1	35	1.14
47113747--47113773	6	4.5	6	100	0	54	48	0	0	51	1.00
47114487--47114515	11	2.7	11	94	5	51	31	0	0	68	0.89
47121512--47121589	39	2.0	39	100	0	156	48	28	5	17	1.68
47122904--47122958	26	2.2	26	83	3	67	40	1	0	58	1.09
47127067--47127459	46	8.3	46	89	6	543	35	15	21	27	1.93
47127047--47127459	98	4.3	97	87	8	531	35	15	21	27	1.94
47127067--47127459	144	2.7	144	94	0	669	35	15	21	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47127423--47127495	37	2.0	37	94	2	130	35	16	23	24	1.95
47134356--47134426	26	2.7	27	80	4	81	23	30	35	9	1.88
47134458--47134518	20	3.0	20	79	15	72	63	0	36	0	0.94
47134598--47134737	67	2.0	70	85	6	189	33	6	11	48	1.65
47134823--47135717	158	5.6	159	88	4	1274	53	8	10	28	1.64
47136448--47136571	46	2.8	46	91	3	200	27	22	16	33	1.96
47136448--47136867	37	10.8	45	92	5	216	26	20	15	37	1.92
47136533--47136894	37	9.8	37	96	0	652	26	20	13	39	1.90
47140466--47140497	12	2.7	12	95	0	55	18	37	34	9	1.83
47144305--47144553	50	4.8	50	85	4	284	20	29	24	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313