Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  104  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34304724--34304780
20
2.8
21
82
12
66
70
7
0
22
1.11
34304827--34304859
15
2.1
16
88
11
50
69
0
0
30
0.88
34314756--34314800
18
2.6
18
89
6
67
15
26
22
35
1.94
34315991--34316058
35
2.0
34
94
2
118
26
16
13
44
1.84
34326805--34327357
105
5.3
104
80
4
484
29
23
14
31
1.95
34328253--34328277
4
6.2
4
100
0
50
0
0
24
76
0.80
34330379--34330458
34
2.3
34
83
10
92
43
2
13
40
1.58
34330413--34330500
30
2.7
31
79
11
90
38
2
19
39
1.64
34334806--34334837
7
4.6
7
92
0
55
56
12
3
28
1.51
34335685--34335779
25
3.7
23
68
22
57
63
4
2
30
1.25
34335699--34335809
53
2.1
54
91
1
179
60
4
1
33
1.27
34335845--34336109
132
2.0
132
99
0
521
44
7
10
37
1.67
34336711--34336778
10
6.5
10
75
11
57
69
2
0
27
1.03
34336710--34336778
11
6.5
11
74
15
65
69
2
0
27
1.02
34336712--34336779
21
3.3
20
82
12
84
67
2
0
29
1.05
34336720--34336782
21
3.0
20
86
6
90
65
3
0
31
1.09
34343308--34343338
16
1.9
16
93
0
53
9
9
9
70
1.33
34344419--34344443
13
1.9
13
100
0
50
48
0
12
40
1.40
34346126--34346183
20
2.9
20
84
7
73
53
17
13
15
1.73
34346267--34346305
20
2.0
20
94
0
69
51
15
10
23
1.73
34347177--34347268
45
2.0
45
95
0
166
36
17
13
32
1.88
34350005--34350034
15
2.0
15
93
0
51
26
16
6
50
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34358523--34358577
16
3.4
16
82
7
76
29
0
0
70
0.87
34358516--34358605
32
2.8
33
82
11
100
30
1
0
68
0.96
34358992--34359034
17
2.4
18
80
7
61
53
0
4
41
1.21
34359022--34359058
18
2.1
17
90
5
56
51
0
0
48
1.00
34366275--34366317
17
2.4
18
80
7
61
53
0
4
41
1.21
34367272--34367309
6
6.3
6
87
0
58
18
13
18
50
1.78
34373241--34373311
36
2.0
35
94
0
115
61
5
22
8
1.45
34373245--34373331
36
2.4
36
84
1
102
65
3
24
5
1.30
34376072--34376112
16
2.6
16
96
0
73
39
4
21
34
1.75
34376845--34376952
26
4.2
26
91
0
171
34
7
22
36
1.82
34380067--34380183
7
16.4
7
81
3
117
49
33
0
17
1.47
34380067--34380183
21
5.5
21
83
2
144
49
33
0
17
1.47
34384611--34384640
9
3.4
9
95
4
53
53
0
0
46
1.00
34387377--34387447
36
2.0
35
91
0
106
52
14
16
15
1.74
34401563--34401609
22
2.1
22
84
7
60
59
4
8
27
1.45
34405304--34405374
34
2.1
34
86
0
97
35
28
5
30
1.80
34406620--34406650
13
2.4
13
100
0
62
45
22
0
32
1.53
34406826--34406939
34
3.4
34
82
2
122
35
28
14
21
1.93
34413262--34413305
17
2.5
17
82
10
54
31
15
2
50
1.57
34413525--34413829
46
6.6
46
88
1
369
20
24
14
40
1.89
34413525--34413827
138
2.2
138
85
1
410
20
24
14
40
1.89
34415992--34416028
20
1.9
20
88
5
58
51
8
0
40
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34419980--34420383
72
5.6
72
99
0
792
42
24
5
26
1.77
34420384--34420418
3
11.7
3
100
0
70
68
0
0
31
0.90
34430940--34431011
25
3.0
24
81
4
74
43
19
20
16
1.89
34433870--34433959
45
2.0
45
97
0
171
34
11
14
40
1.81
34444968--34445077
57
1.9
57
98
0
211
40
22
18
18
1.91
34444968--34445099
57
2.3
57
92
0
210
40
23
18
17
1.91
34447528--34447570
16
2.7
15
79
10
50
41
23
0
34
1.55
34447763--34447898
41
3.4
41
76
9
138
33
24
16
25
1.95
34458157--34458644
244
2.0
244
97
0
931
32
12
12
42
1.80
34474296--34474355
31
1.9
31
86
6
86
31
10
15
43
1.79
34481595--34481619
8
3.1
8
100
0
50
76
0
0
24
0.80
34481592--34481660
29
2.3
31
80
9
81
60
4
0
34
1.16
34481873--34481940
30
2.3
30
82
10
77
27
17
7
47
1.74
34484648--34484681
17
1.9
18
94
5
61
20
5
11
61
1.50
34487362--34487413
9
5.8
9
86
0
59
30
9
15
44
1.78
34487903--34487936
12
2.8
12
86
0
50
50
17
23
8
1.74
34497995--34498051
28
2.0
28
96
0
105
24
24
14
36
1.92
34501412--34501437
13
2.0
13
100
0
52
23
23
30
23
1.99
34504589--34504622
17
1.9
18
88
5
52
70
17
0
11
1.16
34507650--34508209
44
12.6
44
70
8
292
32
17
20
29
1.95
34507650--34507852
89
2.3
88
81
4
221
28
17
22
32
1.96
34507648--34507896
133
1.9
133
88
3
376
29
17
21
31
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34507502--34508171
314
2.1
312
83
3
828
32
16
20
30
1.95
34508004--34508209
45
4.7
44
76
4
200
33
20
19
26
1.97
34508447--34508483
19
1.9
19
88
0
56
51
43
2
2
1.30
34509019--34509138
3
40.0
3
76
6
109
28
5
3
62
1.34
34509298--34509353
3
18.0
3
75
14
51
30
1
5
62
1.28
34509497--34509548
18
2.9
18
77
8
61
17
13
1
67
1.32
34512925--34512965
17
2.4
16
88
8
55
0
12
2
85
0.70
34514607--34514637
13
2.4
13
94
0
53
41
19
3
35
1.67
34523923--34523963
18
2.3
18
86
0
55
46
17
17
19
1.85
34523941--34524053
45
2.5
45
92
0
190
45
17
15
22
1.85
34524276--34524340
19
3.3
19
69
21
53
43
20
6
30
1.76
34524253--34524339
40
2.2
40
85
4
113
40
18
8
33
1.80
34525093--34525126
9
3.8
9
88
11
52
0
8
2
88
0.62
34526825--34526899
29
2.6
29
83
12
84
49
12
9
29
1.71
34533592--34533618
5
5.4
5
100
0
54
18
0
0
81
0.69
34534649--34534701
25
2.1
25
96
0
97
32
1
11
54
1.47
34536862--34536890
14
2.1
14
100
0
58
24
6
0
68
1.13
34551614--34551710
49
2.0
48
91
0
149
16
25
17
39
1.90
34553193--34553235
22
2.0
22
86
4
61
46
6
0
46
1.30
34553720--34553744
13
1.9
13
100
0
50
52
0
0
48
1.00
34555378--34555772
199
2.0
200
93
0
684
34
13
17
34
1.89
34556616--34556659
20
2.3
20
84
7
56
68
2
2
27
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34557352--34557540
91
2.1
91
87
4
265
38
11
17
32
1.85
34561211--34561254
3
14.7
3
95
0
52
22
0
9
68
1.18
34562493--34562528
13
2.8
13
91
0
54
2
36
44
16
1.63
34563343--34563509
52
3.2
52
79
10
178
32
25
14
26
1.95
34564361--34564398
15
2.6
15
87
4
60
36
7
0
55
1.29
34566497--34566560
28
2.3
28
72
0
65
50
9
1
39
1.44
34571156--34571185
15
2.0
15
100
0
60
13
13
40
33
1.83
34573469--34573523
23
2.4
24
82
11
62
63
0
1
34
1.05
34573779--34573803
4
6.2
4
100
0
50
24
0
0
76
0.80
34583690--34584084
195
2.0
195
99
0
781
29
17
26
27
1.98
34592984--34593054
20
3.6
20
76
14
76
35
0
5
59
1.21
34592989--34593048
19
2.9
22
80
12
81
36
0
5
58
1.20
34594867--34594918
20
2.5
20
84
6
68
26
15
30
26
1.96
34595706--34595786
42
1.9
42
87
0
117
24
29
23
22
1.99
34597588--34597649
29
2.2
29
97
2
117
32
17
16
33
1.92
34598359--34598531
57
3.0
57
99
0
337
26
10
22
41
1.86
34605769--34605831
28
2.2
28
91
0
99
31
6
30
31
1.83
34616227--34616289
28
2.2
28
88
0
90
33
6
28
31
1.82
34629711--34629756
24
1.9
24
90
0
74
52
8
10
28
1.66
34637935--34637966
16
2.0
16
93
0
55
65
3
6
25
1.31
34639767--34639806
21
2.0
21
85
5
55
20
25
40
15
1.90
34640203--34640289
43
2.0
43
93
0
147
35
32
14
17
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34641099--34641545
46
9.5
46
76
12
260
24
29
17
29
1.97
34641099--34641548
140
3.2
141
80
8
386
24
29
17
28
1.97
34644222--34644285
27
2.4
27
92
2
103
51
1
3
43
1.26
34644680--34644734
26
2.2
26
84
12
71
65
1
0
32
1.03
34663394--34663425
3
10.7
3
100
0
64
65
0
0
34
0.93
34671784--34672173
207
1.9
207
95
0
699
32
15
17
34
1.91
34672069--34672261
103
1.9
103
89
2
298
36
16
16
30
1.91
34676643--34676702
31
2.0
31
83
3
77
53
5
5
36
1.45
34677728--34677819
47
2.0
47
95
0
166
60
11
11
15
1.58
34678343--34678367
12
2.1
12
100
0
50
44
0
0
56
0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313