genome.fa.s26.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  172  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53572973--53573002	16	1.9	16	93	6	53	40	16	0	43	1.48
53574058--53574214	71	2.2	70	84	4	208	42	15	10	31	1.81
53574197--53574276	35	2.3	35	80	0	88	42	16	7	33	1.76
53574668--53575589	41	22.5	41	97	1	1706	32	24	19	24	1.98
53576771--53576795	9	2.8	9	100	0	50	24	12	0	64	1.27
53582292--53582428	64	2.1	64	89	0	211	21	21	33	23	1.97
53584497--53584526	5	5.8	5	92	7	51	63	0	0	36	0.95
53584495--53584526	10	3.0	11	90	9	57	62	0	0	37	0.95
53589457--53589492	17	2.1	17	89	0	54	61	2	0	36	1.11
53592208--53592232	13	1.9	13	100	0	50	76	16	0	8	1.02
53592328--53592365	13	2.8	13	88	4	58	65	2	7	23	1.32
53593724--53593780	28	2.0	28	90	6	89	56	0	5	38	1.22
53595611--53595761	73	2.1	71	81	4	169	22	26	27	23	1.99
53595662--53596103	114	3.9	115	83	5	549	22	21	29	26	1.99
53597560--53597939	147	2.6	146	79	5	385	26	15	22	35	1.94
53599768--53599862	13	7.2	13	70	15	61	40	9	3	47	1.52
53599744--53599871	53	2.4	53	98	0	247	40	10	3	45	1.56
53600004--53600047	9	4.8	9	80	5	52	43	20	2	34	1.64
53605537--53605585	21	2.3	21	92	0	80	32	20	40	6	1.77
53605969--53606239	43	6.4	42	80	4	267	26	18	21	33	1.96
53605994--53606240	85	2.9	85	81	4	273	27	19	21	32	1.97
53608134--53608593	94	4.9	94	84	3	559	27	19	19	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53608150--53608599	50	9.5	49	66	19	213	28	18	20	32	1.96
53608386--53608548	44	3.6	43	72	16	139	29	17	20	33	1.95
53614678--53614718	13	3.1	14	82	10	50	48	19	17	14	1.81
53620133--53620208	39	2.0	38	82	5	91	34	15	19	30	1.93
53620475--53620507	17	1.9	17	100	0	66	36	6	6	51	1.51
53620468--53620585	30	3.9	30	68	10	96	35	5	7	51	1.52
53620468--53620520	13	3.8	13	77	18	52	33	7	3	54	1.46
53620490--53620633	61	2.4	61	84	4	184	38	4	7	49	1.53
53620786--53620924	45	3.2	45	72	15	141	47	15	4	32	1.65
53620815--53621458	18	34.0	21	68	21	164	48	16	1	33	1.57
53620857--53620885	8	3.8	8	90	9	51	62	10	0	27	1.28
53620857--53620887	15	2.1	15	100	0	62	61	12	0	25	1.32
53620920--53621592	9	75.4	9	74	10	546	47	17	1	33	1.56
53620775--53620966	83	2.3	83	83	3	262	44	17	4	33	1.68
53621391--53621599	66	3.1	67	79	10	214	45	19	0	34	1.54
53621479--53621589	25	4.5	25	75	15	81	45	20	0	33	1.58
53621475--53621590	41	2.8	42	82	7	123	44	20	0	33	1.58
53621563--53621599	7	5.0	7	87	12	56	54	16	0	29	1.43
53627075--53627125	21	2.4	21	90	0	75	33	19	45	1	1.62
53627571--53627659	40	2.2	40	84	6	108	35	22	21	20	1.96
53627603--53627720	40	3.0	38	77	9	128	38	23	19	17	1.93
53628003--53628081	41	1.9	41	89	0	122	21	21	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53628701--53628812	59	1.9	58	90	1	179	25	2	20	50	1.61
53629818--53629848	16	1.9	16	93	0	53	35	25	6	32	1.82
53637073--53637260	87	2.2	87	84	1	234	40	15	31	12	1.85
53637221--53637279	21	2.8	21	94	0	100	32	15	45	6	1.72
53637593--53638918	43	30.8	43	96	0	2269	23	20	31	23	1.98
53638755--53638826	25	3.2	25	59	25	59	23	23	31	20	1.98
53639075--53639288	43	5.0	43	77	6	209	32	20	18	28	1.96
53639073--53639240	87	1.9	87	85	2	230	34	21	19	25	1.96
53643075--53643172	49	2.0	49	97	0	187	25	4	25	44	1.71
53643200--53643255	29	1.9	29	85	7	78	35	8	10	44	1.71
53644130--53644177	22	2.2	22	88	7	71	62	2	6	29	1.31
53648314--53648420	51	2.1	52	86	5	148	28	16	8	45	1.77
53649596--53649644	23	2.1	23	88	0	71	36	18	4	40	1.70
53661086--53661452	109	3.3	107	77	9	332	37	13	21	27	1.91
53661086--53661455	36	10.1	35	76	8	299	37	13	21	28	1.91
53663599--53663669	30	2.4	31	77	15	94	43	12	7	36	1.70
53665090--53665904	140	6.0	139	82	6	808	31	20	19	28	1.97
53669971--53670010	20	2.0	21	90	5	64	67	5	0	27	1.11
53678944--53679080	63	2.2	63	87	0	193	24	18	25	31	1.98
53679607--53679673	20	3.2	20	79	14	64	71	4	20	2	1.17
53681988--53682044	25	2.2	27	84	12	84	49	12	10	28	1.73
53681992--53682042	26	2.0	26	88	7	79	50	13	9	25	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53683817--53683858	14	3.1	14	79	3	50	40	4	2	52	1.35
53689154--53689245	25	3.7	24	80	11	96	25	22	20	31	1.98
53696213--53696265	21	2.5	21	87	0	70	18	28	32	20	1.97
53697049--53697084	17	2.0	19	89	10	58	72	8	0	19	1.10
53704736--53704779	19	2.3	20	84	7	56	27	20	11	40	1.86
53706643--53706682	19	2.1	19	85	0	53	12	15	7	65	1.47
53707604--53707645	7	6.0	7	81	18	52	69	0	16	14	1.20
53707604--53707645	21	2.0	21	86	9	59	69	0	16	14	1.20
53708891--53709623	261	2.8	260	96	1	1337	26	17	24	30	1.97
53708891--53709658	129	5.9	129	94	2	1315	26	17	25	30	1.97
53708913--53709673	390	2.0	389	92	1	1269	27	17	24	30	1.97
53709668--53709757	44	2.0	44	91	4	146	26	13	24	35	1.92
53710020--53710198	44	4.0	44	79	2	216	28	14	24	32	1.94
53710175--53710382	44	4.7	44	68	5	134	28	18	24	28	1.98
53710248--53710427	44	4.1	44	67	16	113	27	18	24	28	1.98
53709648--53710490	441	1.9	441	89	1	1296	29	17	24	29	1.97
53708887--53710583	132	12.9	132	80	7	881	27	17	24	30	1.97
53710575--53710864	44	6.6	44	91	0	436	31	12	25	30	1.93
53713045--53713073	14	2.1	14	100	0	58	27	41	17	13	1.87
53716371--53716416	19	2.4	20	76	20	53	26	21	8	43	1.81
53718802--53718845	21	2.1	21	91	4	72	68	0	18	13	1.22
53718802--53718843	7	6.0	7	86	10	59	71	0	16	11	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53720102--53720360	50	5.2	50	68	6	211	30	20	23	25	1.98
53720076--53720433	100	3.6	100	91	2	569	29	21	24	25	1.99
53720130--53720386	50	5.2	50	69	4	205	30	22	21	25	1.99
53720076--53720441	199	1.8	199	90	2	592	28	21	24	25	1.99
53720559--53720901	44	7.8	44	68	8	205	31	19	23	25	1.98
53720457--53720978	132	4.0	132	92	0	821	30	18	23	26	1.98
53721016--53721406	45	8.8	45	74	3	342	31	18	22	27	1.97
53720982--53721328	89	3.9	89	90	0	525	31	18	21	27	1.97
53720993--53721406	178	2.3	178	85	2	537	31	18	21	28	1.97
53727827--53727908	38	2.2	38	100	0	164	36	24	15	23	1.94
53728007--53728084	25	3.2	25	64	10	72	33	30	3	32	1.76
53727956--53729190	49	25.6	49	96	1	2103	30	30	7	31	1.86
53736256--53736288	12	2.8	12	86	13	50	24	18	6	51	1.68
53741265--53741443	90	2.0	90	95	0	322	62	8	10	18	1.52
53742542--53742715	89	2.0	88	93	1	294	31	24	14	29	1.94
53742542--53742693	44	3.4	45	74	13	161	29	24	13	32	1.94
53743994--53744036	14	3.0	14	80	12	52	11	23	0	65	1.25
53743996--53744042	20	2.3	20	85	3	58	12	21	0	65	1.25
53746908--53746951	19	2.3	20	84	7	56	40	9	20	29	1.83
53747402--53747433	16	2.0	16	93	0	55	37	28	18	15	1.92
53750213--53750253	3	13.3	3	89	5	64	65	0	2	31	1.05
53751513--53751570	19	3.2	19	74	13	59	65	3	1	29	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53751628--53751653	11	2.4	11	100	0	52	69	0	7	23	1.14
53752174--53752204	15	2.1	15	93	0	53	38	0	6	54	1.26
53754880--53754927	20	2.4	21	86	6	64	43	6	4	45	1.48
53756336--53756373	6	6.3	6	96	0	67	81	2	0	15	0.80
53757200--53757228	13	2.1	14	93	6	51	6	10	0	82	0.83
53759839--53759878	20	2.1	19	90	4	62	32	10	12	45	1.75
53768743--53768777	17	2.1	17	94	0	61	11	45	28	14	1.79
53769338--53769603	138	1.9	139	89	2	410	45	12	25	15	1.82
53769819--53769971	76	2.0	76	98	0	297	35	24	13	26	1.93
53771433--53771480	21	2.3	21	100	0	96	12	14	0	72	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313