genome.fa.s26.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  168  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52619699--52619809	26	3.4	36	68	25	102	53	11	0	35	1.38
52619699--52619814	62	1.9	62	87	5	155	53	12	0	34	1.38
52619969--52620009	3	13.7	3	100	0	82	68	31	0	0	0.90
52620008--52620041	3	11.3	3	100	0	68	67	0	0	32	0.91
52620087--52620125	20	2.0	21	85	10	55	66	10	0	23	1.22
52620257--52620324	27	2.5	27	85	4	93	17	26	27	27	1.98
52620372--52620426	27	2.0	28	96	3	103	32	0	9	58	1.30
52622318--52622372	27	2.0	27	100	0	110	30	10	7	50	1.64
52623016--52623047	16	2.0	16	100	0	64	68	6	6	18	1.32
52634331--52634360	12	2.5	12	94	0	51	56	13	6	23	1.60
52634343--52634464	47	2.6	47	94	0	217	57	9	10	22	1.61
52634591--52634617	14	1.9	14	100	0	54	48	22	22	7	1.75
52634574--52634692	59	2.0	59	96	0	220	52	16	16	14	1.76
52635520--52635558	20	2.0	20	85	10	53	56	0	0	43	0.99
52640259--52640324	34	1.9	34	87	6	98	19	12	21	46	1.82
52646668--52646751	23	3.8	22	83	7	100	39	20	21	19	1.93
52647148--52647178	3	10.3	3	100	0	62	67	0	0	32	0.91
52647690--52647738	9	5.4	9	80	9	55	4	16	4	75	1.11
52647690--52647739	18	2.7	19	81	9	68	6	16	4	74	1.17
52647735--52647764	14	2.1	14	100	0	60	20	6	0	73	1.05
52647796--52647845	24	2.1	24	84	0	64	36	8	4	52	1.50
52648051--52648077	13	2.1	13	100	0	54	37	14	0	48	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52653900--52654110	23	9.2	23	90	0	341	20	21	27	30	1.98
52658660--52658698	18	2.2	17	86	13	53	33	0	20	46	1.51
52658924--52659068	23	6.3	23	91	0	245	22	20	26	30	1.98
52660842--52660915	9	8.8	9	82	14	86	36	31	10	21	1.88
52660847--52660872	13	2.0	13	100	0	52	23	46	15	15	1.83
52661125--52661175	18	2.8	18	96	0	93	31	17	15	35	1.92
52666532--52666591	30	2.0	31	90	3	95	20	38	0	41	1.52
52670757--52670789	4	8.2	4	100	0	66	0	24	0	75	0.80
52672809--52672846	15	2.6	15	83	4	51	44	15	7	31	1.75
52674716--52674781	31	2.1	31	94	0	114	37	9	21	31	1.85
52687141--52687248	32	3.4	32	80	10	121	39	8	8	43	1.65
52692371--52692426	29	1.9	29	85	7	78	50	1	0	48	1.11
52694414--52694477	29	2.2	29	77	5	67	42	7	10	39	1.69
52695370--52695435	21	3.3	19	77	12	69	27	3	4	65	1.27
52696020--52696115	39	2.5	40	79	8	108	26	23	27	22	2.00
52697829--52697873	19	2.4	20	75	14	51	26	8	0	64	1.23
52697852--52697918	27	2.6	25	77	13	73	28	2	1	67	1.14
52708877--52708914	15	2.6	15	91	4	60	5	5	23	65	1.34
52711157--52711232	16	4.9	15	70	19	50	44	2	10	42	1.52
52711237--52711278	15	2.7	16	82	14	52	45	0	2	52	1.13
52711228--52711269	15	2.9	15	82	10	52	47	0	0	52	1.00
52713161--52713214	3	18.0	3	96	0	99	66	31	0	1	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52714664--52714779	44	2.7	43	78	9	119	28	21	18	31	1.97
52715086--52715459	44	8.6	44	78	10	378	28	25	17	28	1.98
52715256--52715328	38	1.9	38	86	5	103	23	24	19	32	1.97
52715086--52715418	126	2.6	128	86	4	447	28	25	18	27	1.98
52715086--52715459	170	2.2	173	85	6	492	28	25	17	28	1.98
52716461--52716576	44	2.7	43	78	9	119	28	21	18	31	1.97
52716883--52717256	44	8.6	44	80	6	415	28	25	17	28	1.98
52717053--52717125	38	1.9	38	86	5	103	23	24	19	32	1.97
52716929--52717256	170	1.9	170	87	3	482	29	25	17	28	1.97
52716883--52717215	126	2.6	128	86	4	438	28	25	18	27	1.98
52717225--52717492	88	3.0	87	83	2	329	22	20	26	30	1.98
52726523--52726570	3	16.0	3	95	0	87	66	31	0	2	1.03
52728655--52728693	19	2.1	18	85	4	51	51	0	25	23	1.49
52731305--52731428	62	2.0	62	92	3	205	32	22	5	39	1.77
52739871--52739903	16	1.9	18	88	11	52	15	6	0	78	0.93
52747035--52747106	15	4.6	16	75	11	69	26	2	1	69	1.10
52747036--52747113	9	9.8	8	74	14	72	25	2	1	70	1.07
52747036--52747106	24	3.1	22	76	13	72	25	2	1	70	1.09
52747440--52747722	144	2.0	144	100	0	566	32	15	17	33	1.92
52750015--52750055	22	1.9	22	85	5	57	46	14	7	31	1.72
52751674--52751713	20	2.0	20	100	0	80	30	10	30	30	1.90
52757429--52757458	13	2.3	13	100	0	60	40	43	0	16	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52757604--52757675	9	7.9	9	81	9	65	20	6	27	44	1.77
52757601--52757676	18	4.2	18	79	1	80	19	6	26	47	1.74
52757604--52757675	27	2.7	26	76	6	72	20	6	27	44	1.77
52758939--52758965	14	1.9	14	100	0	54	40	14	14	29	1.86
52761097--52761142	20	2.4	19	86	13	67	36	2	2	58	1.22
52767694--52767751	11	5.9	10	77	18	68	68	0	1	29	0.99
52770001--52770029	3	9.7	3	100	0	58	68	0	0	31	0.89
52781826--52781861	2	18.5	2	88	5	56	55	0	0	44	0.99
52783137--52783228	3	31.3	3	85	4	125	30	3	1	65	1.16
52783226--52783266	4	10.2	4	94	0	73	26	24	0	48	1.51
52783680--52783812	66	2.0	66	100	0	266	27	16	3	53	1.58
52799271--52799340	3	23.3	3	73	5	61	62	2	5	28	1.32
52803408--52803442	18	1.9	18	94	0	61	22	8	31	37	1.85
52803928--52804090	82	2.0	82	100	0	326	30	16	19	33	1.94
52804229--52804296	34	2.0	35	88	2	102	48	7	4	39	1.51
52804292--52804335	23	2.0	22	82	13	54	45	13	4	36	1.64
52804422--52804475	21	2.6	20	77	8	54	9	16	40	33	1.80
52805406--52805434	7	4.1	7	100	0	58	58	13	0	27	1.36
52806575--52806652	40	2.0	40	87	5	113	44	0	26	28	1.54
52806607--52806640	17	1.9	18	88	5	52	38	0	23	38	1.55
52806641--52806697	11	5.1	11	86	2	78	49	1	29	19	1.58
52807558--52807609	25	2.2	23	83	13	61	32	0	5	61	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52808270--52808303	18	2.0	18	88	11	54	29	5	5	58	1.45
52809256--52809298	17	2.6	17	82	13	54	62	0	2	34	1.08
52812010--52812086	27	2.9	27	81	9	79	29	22	27	20	1.98
52812155--52812227	19	3.9	19	82	5	96	36	10	0	52	1.37
52812498--52812568	37	1.9	37	97	0	133	49	0	9	40	1.36
52812504--52812572	19	3.7	19	82	5	97	52	0	10	37	1.36
52812790--52812859	36	1.9	37	97	2	133	50	0	10	40	1.36
52812790--52812847	17	3.2	17	74	11	62	51	0	8	39	1.33
52812796--52812863	19	3.7	19	78	9	88	52	0	8	38	1.33
52812935--52813007	27	2.7	27	81	10	78	20	24	23	31	1.98
52812962--52813021	27	2.2	27	85	5	77	23	18	21	36	1.95
52813064--52813114	23	2.2	23	96	0	93	54	0	7	37	1.29
52814935--52814966	14	2.3	14	94	0	55	37	6	9	46	1.61
52816804--52816965	54	3.0	54	100	0	324	35	9	33	22	1.86
52820888--52820926	18	2.2	18	95	0	69	30	35	12	20	1.90
52825526--52825641	25	4.7	25	78	13	107	18	25	19	37	1.94
52825553--52825665	49	2.3	50	79	10	124	21	23	17	37	1.94
52825627--52825692	25	2.6	25	78	4	80	22	24	16	36	1.94
52830285--52830630	27	12.9	27	79	7	267	45	15	16	22	1.85
52830277--52830630	54	6.6	54	76	10	296	45	15	16	22	1.84
52830286--52830635	81	4.3	79	77	7	303	45	16	16	22	1.85
52830824--52830873	26	1.9	26	91	0	82	16	24	22	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52830824--52830885	26	2.4	26	86	5	81	19	22	17	40	1.91
52831543--52831585	20	2.2	20	91	0	68	46	11	13	27	1.78
52833265--52833379	41	2.8	40	81	5	115	24	26	16	33	1.96
52835403--52835440	18	2.1	19	85	5	51	57	10	0	31	1.32
52839871--52839929	30	2.0	29	90	3	91	33	1	0	64	1.04
52839895--52840016	59	2.1	59	98	0	235	35	0	8	55	1.35
52840152--52840250	24	4.0	24	67	17	67	33	2	1	63	1.12
52840444--52840485	20	2.2	20	82	4	50	45	4	0	50	1.23
52840848--52840892	23	2.0	23	86	8	65	51	4	2	42	1.34
52841092--52841138	24	2.0	23	83	4	58	53	10	0	36	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313