genome.fa.s26.2.7.7.80.10.50.1000.300.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  300  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92265902--92265932	15	2.1	15	100	0	62	54	19	12	12	1.70
92266464--92266532	35	2.0	34	91	0	102	27	23	14	33	1.93
92274514--92274582	15	4.6	15	83	0	84	11	17	13	57	1.64
92274505--92274584	30	2.7	30	82	7	99	11	17	15	56	1.67
92276984--92277157	46	3.8	46	79	4	188	22	20	27	29	1.98
92276980--92277151	93	1.8	93	91	0	281	22	20	29	28	1.98
92280745--92280906	47	3.4	47	88	3	243	28	30	8	32	1.86
92280745--92280902	49	3.3	49	86	5	234	28	30	8	32	1.86
92285189--92285268	30	2.5	30	84	13	99	50	2	1	46	1.23
92290612--92290667	9	6.2	9	97	0	94	39	28	10	21	1.87
92295239--92295306	16	4.2	16	92	0	109	35	7	29	27	1.84
92295291--92295384	44	2.1	46	88	4	138	32	5	26	35	1.79
92295697--92295735	14	2.8	14	92	0	60	48	2	10	38	1.51
92296073--92296107	18	1.9	18	94	0	61	34	20	14	31	1.92
92296158--92296192	18	1.9	18	94	0	61	34	20	14	31	1.92
92296050--92296218	85	2.0	85	100	0	338	31	18	14	34	1.91
92296200--92296444	40	6.1	40	90	0	364	32	16	10	40	1.82
92296196--92296438	120	2.0	120	94	0	423	31	17	10	40	1.84
92298573--92298611	20	1.9	21	89	5	62	33	23	12	30	1.92
92301437--92301489	26	2.0	26	96	0	97	20	5	20	52	1.66
92306067--92306142	40	1.9	40	86	0	107	17	11	34	36	1.86
92307187--92307309	49	2.6	48	87	5	160	25	31	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92307280--92307451	94	1.8	94	86	5	249	23	28	17	30	1.97
92307187--92307448	47	5.5	48	73	16	176	24	29	17	28	1.97
92311841--92311894	27	2.0	27	85	0	72	38	7	14	38	1.75
92312141--92312371	50	4.7	49	81	3	284	25	17	26	29	1.98
92312148--92312371	99	2.3	99	85	3	290	26	17	26	29	1.98
92316781--92316872	27	3.4	27	86	5	132	28	25	7	39	1.83
92316768--92316872	54	1.9	54	84	3	140	32	23	7	36	1.83
92316864--92317054	27	7.1	27	79	9	169	41	22	8	27	1.82
92316871--92317054	54	3.4	53	82	4	208	42	21	8	28	1.81
92316904--92317053	81	1.9	81	87	5	223	42	22	7	28	1.80
92320207--92320382	46	3.8	45	78	10	185	21	20	28	28	1.98
92320204--92320374	93	1.8	93	91	0	279	21	21	29	28	1.98
92324762--92324817	27	2.0	28	86	3	78	42	10	14	32	1.80
92337910--92338023	43	2.7	43	82	6	135	31	27	16	24	1.96
92338670--92338846	89	2.0	89	97	0	336	40	9	18	32	1.83
92339004--92339042	4	10.2	4	89	10	64	74	0	25	0	0.82
92339939--92340049	47	2.4	47	83	6	145	26	16	22	35	1.95
92342069--92342121	26	2.0	27	85	7	74	24	15	22	37	1.92
92343606--92343689	26	3.2	26	94	0	150	36	23	4	34	1.76
92345790--92345957	40	4.2	40	83	4	106	25	27	23	23	2.00
92345813--92345957	40	3.6	40	85	4	193	23	26	24	24	2.00
92349032--92349416	40	9.6	40	92	1	619	27	20	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92351184--92351259	38	2.0	38	100	0	152	31	23	13	31	1.93
92357911--92358055	40	3.6	40	85	4	193	24	25	24	25	2.00
92359244--92359319	38	2.0	38	100	0	152	31	23	13	31	1.93
92366608--92366642	14	2.4	15	85	9	54	37	17	0	45	1.48
92366608--92366646	14	2.8	14	88	7	53	33	15	0	51	1.44
92367324--92367359	16	2.2	17	90	9	58	61	2	0	36	1.11
92369746--92369791	19	2.4	19	96	0	83	28	17	10	43	1.82
92371419--92371528	56	1.9	57	81	5	134	30	25	15	28	1.96
92375362--92376183	44	18.5	44	70	10	384	26	25	18	29	1.98
92375273--92376182	356	2.6	356	86	3	1224	26	25	18	30	1.98
92375373--92376184	89	9.1	89	68	9	384	26	25	18	29	1.98
92375245--92376183	178	5.3	178	83	4	1090	26	25	17	30	1.97
92377477--92377521	19	2.3	20	81	11	58	8	6	2	82	0.93
92378096--92378124	6	4.8	6	100	0	58	13	0	0	86	0.58
92386833--92387010	27	6.6	27	84	3	205	29	28	15	26	1.96
92386854--92387009	82	1.9	81	88	3	233	29	28	15	26	1.96
92391430--92391516	27	3.2	27	85	9	124	36	24	21	17	1.94
92393054--92393154	50	2.0	50	98	0	193	39	14	1	43	1.57
92393164--92393945	26	30.1	26	99	0	1555	34	26	7	30	1.85
92400107--92400265	27	5.9	27	79	11	148	33	20	24	21	1.97
92400125--92400269	54	2.7	54	90	2	220	33	22	24	20	1.97
92401800--92401875	36	2.1	36	97	0	143	38	15	0	46	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92401889--92401943	26	2.1	26	100	0	110	34	25	7	32	1.83
92405097--92405135	19	2.1	19	95	0	69	56	0	7	35	1.28
92406544--92406653	55	2.0	55	96	0	202	37	19	17	26	1.93
92411005--92411047	6	6.7	6	80	15	50	83	2	2	11	0.83
92411019--92411047	15	1.9	15	100	0	58	82	3	0	13	0.79
92417740--92417764	13	1.9	13	100	0	50	12	8	0	80	0.92
92418415--92418440	13	2.0	13	100	0	52	30	30	23	15	1.95
92428248--92428391	70	2.0	70	92	4	236	44	3	2	50	1.30
92428573--92428635	24	2.5	24	80	10	65	30	1	19	49	1.58
92429263--92429310	25	1.9	25	83	8	62	52	2	18	27	1.57
92431944--92432019	40	1.9	40	86	0	107	17	11	34	36	1.86
92433064--92433186	49	2.6	48	87	5	160	25	31	17	25	1.97
92433157--92433328	94	1.8	94	86	5	249	23	28	17	30	1.97
92433064--92433325	47	5.5	48	73	16	176	24	29	17	28	1.97
92437718--92437771	27	2.0	27	85	0	72	38	7	14	38	1.75
92438025--92438304	99	2.8	100	84	2	386	26	18	26	29	1.98
92438025--92438297	49	5.5	49	85	2	368	26	17	26	29	1.98
92438019--92438302	149	1.9	147	87	3	358	25	17	26	29	1.98
92443462--92443529	34	2.0	34	100	0	136	35	14	26	23	1.94
92452635--92452660	13	2.0	13	100	0	52	15	0	7	76	0.99
92452731--92452971	125	1.9	125	87	3	351	39	12	9	38	1.75
92454590--92454628	16	2.4	16	91	0	60	43	25	5	25	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92454779--92454854	30	2.5	30	89	4	109	21	7	46	25	1.78
92455125--92455201	40	1.9	40	91	0	127	36	35	14	14	1.86
92457466--92457686	40	5.6	40	73	10	127	26	23	25	24	2.00
92460166--92460297	61	2.2	60	83	5	160	40	7	15	36	1.75
92462438--92462506	6	11.5	6	83	10	54	2	33	1	62	1.19
92462438--92462494	12	4.8	12	82	6	62	3	35	1	59	1.25
92462462--92462519	12	4.7	12	79	14	64	1	24	1	72	1.03
92462468--92462516	19	2.5	19	86	3	62	2	24	2	71	1.07
92462462--92462516	6	8.7	7	79	16	50	1	25	1	70	1.06
92463257--92463305	19	2.6	19	86	0	62	44	14	18	22	1.85
92465217--92465327	31	3.4	32	73	21	79	34	1	2	61	1.21
92465266--92465320	24	2.3	23	81	12	58	38	0	1	60	1.08
92468250--92468434	40	4.6	40	93	1	300	26	28	22	22	1.99
92486278--92486308	14	2.2	14	94	0	53	32	32	25	9	1.88
92488534--92488567	14	2.4	14	90	0	50	55	14	5	23	1.61
92492088--92492161	20	3.8	20	70	8	64	40	16	6	36	1.75
92492340--92492408	24	2.9	24	78	2	68	34	20	23	21	1.96
92497067--92497189	27	4.6	26	78	4	93	40	19	9	30	1.84
92497067--92497220	54	2.9	54	80	5	136	39	20	10	29	1.85
92497094--92497220	27	4.8	27	82	4	134	40	21	10	27	1.85
92497208--92497370	54	3.0	54	83	0	200	32	17	21	28	1.96
92497199--92497368	81	2.1	81	84	1	225	34	15	21	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92497209--92497352	27	5.3	27	91	0	198	33	18	21	27	1.96
92497572--92497641	25	2.8	25	91	4	106	27	24	22	25	2.00
92497582--92497668	25	3.5	24	81	12	79	26	25	21	26	2.00
92498863--92498900	15	2.5	15	87	8	51	31	2	5	60	1.33
92501443--92501484	19	2.2	19	100	0	84	21	14	28	35	1.92
92505341--92505417	29	2.6	28	82	8	91	27	27	15	29	1.96
92506724--92506757	8	4.2	8	84	0	50	11	2	32	52	1.53
92512897--92512980	29	3.0	28	82	6	98	28	29	14	27	1.95
92512906--92512980	29	2.7	29	87	4	100	28	30	16	25	1.96
92513210--92513262	8	6.6	8	84	0	70	7	24	18	49	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313