Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  128  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41370459--41370523
13
4.8
13
72
10
58
40
1
0
58
1.07
41370453--41370552
42
2.3
42
93
3
164
43
3
0
54
1.16
41371174--41371431
125
2.1
126
87
2
367
30
23
15
30
1.96
41371545--41371573
9
3.2
9
100
0
58
58
31
0
10
1.31
41378547--41378656
56
2.0
56
96
0
202
17
30
28
24
1.97
41379180--41379219
3
13.3
3
100
0
80
0
32
0
67
0.91
41379503--41379549
24
2.0
24
95
0
85
46
10
0
42
1.38
41379623--41379700
30
2.8
27
75
16
79
34
8
2
53
1.46
41379686--41379725
21
1.9
21
89
0
62
40
2
0
57
1.12
41380967--41381006
20
2.0
20
90
0
62
50
12
10
27
1.72
41380955--41381020
35
1.9
34
90
6
107
46
13
7
31
1.71
41386806--41386847
21
2.0
21
100
0
84
38
0
19
42
1.51
41402774--41403025
63
4.0
63
96
1
425
43
15
21
18
1.87
41405190--41405217
2
14.0
2
100
0
56
0
50
0
50
1.00
41408808--41408833
13
2.0
13
100
0
52
38
15
23
23
1.92
41409245--41409283
18
2.2
18
95
0
69
41
17
20
20
1.91
41418790--41418841
22
2.4
22
83
3
61
25
5
7
61
1.45
41419463--41419500
15
2.5
15
100
0
76
55
5
26
13
1.59
41421612--41421655
4
11.0
4
100
0
88
50
25
0
25
1.50
41425182--41425239
31
1.9
29
82
6
71
29
0
1
68
0.99
41429906--41429956
25
2.0
26
88
3
77
43
3
11
41
1.60
41429911--41429962
25
2.1
25
85
0
68
48
1
13
36
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41443250--41443282
16
2.1
16
100
0
66
24
18
33
24
1.97
41443872--41444221
188
1.9
188
85
1
486
22
17
19
40
1.91
41446181--41446422
131
1.9
127
83
3
313
31
13
14
40
1.84
41458404--41458444
20
2.0
20
86
9
57
65
0
0
34
0.93
41459401--41459476
30
2.5
29
83
10
89
30
7
9
52
1.62
41459467--41459571
41
2.5
42
82
14
110
55
2
1
40
1.26
41459524--41459572
19
2.6
19
81
12
64
61
2
0
36
1.08
41460326--41460391
30
2.2
30
78
5
71
31
3
3
62
1.26
41460589--41460658
31
2.3
31
92
0
113
34
10
22
32
1.88
41461356--41461384
3
9.7
3
100
0
58
65
0
0
34
0.93
41478023--41478048
12
2.2
12
100
0
52
7
15
30
46
1.74
41478037--41478165
40
3.2
39
80
6
127
31
20
25
22
1.98
41478055--41478190
40
3.4
39
78
4
139
34
19
22
23
1.96
41478397--41478446
26
1.9
26
83
0
64
56
6
14
24
1.60
41478705--41478738
14
2.3
15
95
5
61
38
0
26
35
1.57
41478969--41478993
7
3.6
7
100
0
50
0
0
56
44
0.99
41480939--41480998
30
2.0
30
100
0
120
40
10
23
26
1.86
41483544--41483633
41
2.2
42
86
6
121
22
15
27
34
1.94
41483577--41483780
43
4.8
43
79
2
207
21
16
31
30
1.95
41483577--41483780
86
2.4
84
80
2
230
21
16
31
30
1.95
41489439--41489487
25
2.0
25
84
8
64
57
6
2
34
1.35
41489465--41489507
19
2.3
19
80
8
52
60
2
6
30
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41498562--41498597
18
2.0
18
100
0
72
38
16
0
44
1.48
41500169--41500199
9
3.4
9
95
0
53
41
22
9
25
1.84
41503055--41503090
18
2.0
18
100
0
72
55
0
5
38
1.23
41504193--41504254
21
2.9
21
92
4
97
70
3
22
3
1.16
41504184--41504242
21
2.6
23
81
15
77
69
5
18
6
1.30
41505258--41505316
25
2.3
26
82
5
75
35
22
23
18
1.96
41514702--41514745
17
2.4
18
81
11
54
38
4
0
56
1.20
41514753--41514842
44
2.0
44
82
0
108
42
10
3
44
1.54
41522580--41522691
36
3.2
35
73
7
102
37
19
25
17
1.94
41523369--41523451
36
2.3
36
91
0
130
22
32
24
20
1.98
41528963--41529123
84
1.9
84
86
5
227
29
11
12
47
1.76
41532714--41532762
18
2.7
18
77
0
53
26
28
32
12
1.92
41533027--41533124
33
2.9
32
79
10
106
33
19
28
18
1.95
41534712--41534747
17
2.1
18
89
5
56
61
2
0
36
1.11
41541038--41541089
26
2.0
26
100
0
104
38
11
23
26
1.89
41550429--41550469
21
2.0
21
81
18
50
31
19
26
21
1.97
41554923--41554964
13
3.1
13
83
16
50
42
0
4
52
1.22
41560856--41560908
26
2.1
26
85
3
72
24
1
5
67
1.22
41560987--41561033
23
2.0
23
88
8
69
44
6
0
48
1.28
41561050--41561106
25
2.3
26
79
14
66
47
3
0
49
1.18
41561127--41561156
15
2.1
15
93
6
53
40
0
0
60
0.97
41561126--41561162
13
2.7
14
84
15
51
45
0
0
54
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41564064--41564101
19
2.0
19
85
10
51
60
2
5
31
1.33
41575590--41575658
26
2.6
27
78
17
72
44
1
0
53
1.09
41580901--41580925
10
2.5
10
100
0
50
76
0
8
16
1.02
41580876--41580908
18
1.9
17
88
11
50
60
3
0
36
1.12
41580921--41581005
19
4.5
19
66
14
50
62
2
3
31
1.25
41580913--41580992
38
2.1
37
84
6
99
62
2
3
31
1.26
41581265--41581301
17
2.2
17
86
13
51
40
2
0
56
1.13
41589116--41589140
7
3.6
7
100
0
50
12
0
0
88
0.53
41593561--41593609
23
2.3
21
80
13
55
32
0
16
51
1.45
41593571--41593617
23
2.2
23
85
11
64
31
0
14
53
1.42
41594049--41594095
21
2.2
22
88
11
71
29
19
6
44
1.75
41602647--41602694
13
3.7
13
81
13
55
37
10
2
50
1.49
41603089--41603136
19
2.5
19
82
0
51
50
6
4
39
1.47
41603333--41603378
24
1.9
24
86
8
67
50
0
0
50
1.00
41605624--41605658
18
2.0
17
94
5
61
62
5
2
28
1.32
41615119--41615503
44
8.9
43
76
8
325
25
24
21
29
1.99
41615119--41615568
87
5.2
86
76
8
369
25
24
20
29
1.99
41615165--41615568
131
3.1
131
97
0
745
25
24
21
29
1.99
41615579--41616124
175
3.1
175
92
2
859
23
21
24
30
1.99
41615579--41616124
87
6.3
87
91
1
819
23
21
24
30
1.99
41617351--41617415
7
9.0
7
76
20
55
10
15
0
73
1.08
41617351--41617417
22
3.0
22
81
14
75
10
14
0
74
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41617351--41617419
15
4.9
14
77
19
63
10
14
0
75
1.05
41618261--41618314
10
5.1
10
79
20
65
11
0
11
77
0.99
41618276--41618314
12
3.2
12
85
0
60
10
0
10
79
0.94
41618263--41618335
27
2.4
29
81
16
87
13
1
12
72
1.19
41618266--41618333
33
2.2
29
87
10
91
11
1
10
76
1.09
41618261--41618332
9
8.3
9
76
14
64
12
1
11
75
1.12
41618261--41618314
11
5.0
11
80
14
60
11
0
11
77
0.99
41626210--41626261
24
2.2
24
85
0
68
50
7
3
38
1.50
41630663--41630715
24
2.2
24
93
0
88
47
9
5
37
1.60
41632019--41632051
17
2.0
16
94
5
57
60
0
6
33
1.21
41632505--41632533
3
9.7
3
100
0
58
0
34
0
65
0.93
41636903--41636942
14
2.9
14
81
3
55
42
0
0
57
0.98
41636910--41636954
16
2.8
16
81
18
58
44
0
0
55
0.99
41653045--41653996
474
2.0
474
99
0
1877
38
12
17
32
1.86
41656026--41656091
11
6.0
11
76
0
60
15
3
16
65
1.40
41661415--41661857
109
4.1
108
87
2
606
34
16
16
32
1.91
41662078--41662111
15
2.3
15
90
10
52
70
5
0
23
1.09
41662235--41662285
20
2.6
21
82
17
65
68
1
5
23
1.22
41663529--41663577
19
2.5
19
86
3
62
18
6
36
38
1.76
41668955--41668992
20
1.9
20
88
0
58
26
2
0
71
1.00
41673980--41674012
16
2.1
16
88
5
50
69
0
0
30
0.88
41681078--41681112
14
2.5
14
85
0
52
65
5
2
25
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41690630--41690672
19
2.3
19
87
0
59
55
0
0
44
0.99
41720566--41720649
30
2.8
29
81
13
82
48
5
9
35
1.60
41721243--41721372
65
2.0
65
98
0
251
53
6
4
36
1.47
41721269--41721373
30
3.3
30
69
17
95
53
5
2
38
1.40
41724358--41724503
37
4.0
37
93
1
242
24
21
16
36
1.94
41724467--41724735
46
5.6
46
84
10
340
28
22
14
34
1.93
41724510--41724729
52
4.3
52
85
8
299
27
22
14
35
1.93
41724467--41724735
98
2.7
98
93
0
457
28
22
14
34
1.93
41729924--41729953
4
7.5
4
100
0
60
50
23
0
26
1.50
41730057--41730220
85
2.0
84
83
4
208
45
2
6
46
1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313