genome.fa.s26.2.7.7.80.10.50.1000.259.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  259  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79457486--79457634	81	1.8	81	85	2	210	48	17	14	19	1.81
79457484--79457634	27	5.6	26	78	5	158	47	17	15	19	1.82
79457484--79457635	54	2.8	53	83	2	187	47	17	15	19	1.83
79469946--79470011	6	10.0	6	77	18	51	77	6	3	13	1.08
79469946--79470019	27	2.7	26	83	8	85	77	5	4	13	1.10
79469946--79469999	15	3.9	14	76	16	58	77	5	1	14	1.03
79469964--79470004	21	2.0	21	90	0	64	78	4	2	14	1.03
79471764--79471833	10	6.9	11	72	20	55	74	0	4	21	0.99
79471761--79471847	26	3.2	26	77	17	95	77	0	5	17	0.96
79479255--79479279	9	2.8	9	100	0	50	24	0	0	76	0.80
79479259--79479296	18	2.2	17	86	9	51	26	0	2	71	1.00
79479272--79479331	29	2.1	29	81	12	70	41	1	5	51	1.33
79488020--79488072	26	2.0	26	85	7	72	30	9	13	47	1.74
79495789--79495830	21	2.0	21	100	0	84	28	9	0	61	1.27
79500119--79500151	17	2.0	16	94	5	57	36	0	0	63	0.95
79502921--79502964	23	1.9	23	85	0	61	38	0	6	54	1.27
79507900--79507954	20	2.8	20	85	0	74	34	7	9	49	1.62
79531928--79532000	25	2.8	25	81	4	83	30	17	8	43	1.78
79531928--79532002	26	2.9	25	78	11	80	30	17	9	42	1.80
79534971--79535001	15	2.1	15	94	5	55	41	9	12	35	1.76
79543394--79543425	13	2.5	13	100	0	64	62	9	21	6	1.47
79543779--79543816	20	1.9	20	84	10	51	31	21	28	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79549850--79549906	28	2.0	28	100	0	114	47	10	7	35	1.65
79551121--79551159	21	2.0	20	85	14	55	46	2	5	46	1.38
79551235--79551286	25	2.0	26	82	10	63	50	5	5	38	1.51
79551223--79551326	37	2.8	39	73	20	98	50	4	3	41	1.42
79556438--79556547	51	2.2	51	84	0	148	37	28	7	27	1.83
79556696--79556790	33	2.9	33	79	3	102	24	41	2	32	1.67
79565003--79565064	30	2.0	31	90	3	99	56	0	9	33	1.32
79575352--79575409	29	2.0	29	89	0	89	41	3	8	46	1.51
79581263--79581288	13	2.0	13	100	0	52	38	7	15	38	1.76
79583621--79583659	16	2.4	16	78	0	51	43	2	2	51	1.29
79583793--79583823	9	3.4	9	90	0	53	25	12	22	38	1.90
79583876--79583912	9	4.1	9	89	0	56	45	10	10	32	1.74
79584939--79584969	5	6.2	5	92	0	53	19	16	19	45	1.86
79586200--79586231	14	2.3	14	100	0	64	43	0	28	28	1.55
79590247--79590306	30	2.0	30	100	0	120	23	16	23	36	1.94
79593538--79593611	27	2.7	27	80	0	85	22	31	24	21	1.99
79593676--79593711	17	2.1	17	89	0	54	69	0	19	11	1.18
79596575--79596846	49	5.6	49	85	3	345	34	11	11	42	1.77
79596578--79596846	146	1.8	145	85	4	380	33	11	11	43	1.77
79599313--79599531	94	2.5	90	86	8	308	59	15	1	23	1.44
79599944--79600008	29	2.2	31	86	8	98	49	13	13	23	1.78
79606701--79606758	21	2.8	21	79	10	73	39	27	5	27	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79606691--79606746	28	2.0	27	89	3	85	37	32	5	25	1.78
79608316--79608371	15	3.8	15	76	2	51	57	3	5	33	1.39
79614736--79614899	43	3.9	43	83	4	208	29	26	15	28	1.96
79615515--79615801	70	4.1	70	89	2	423	43	19	12	24	1.86
79615550--79615828	47	5.9	48	70	18	169	43	17	13	25	1.85
79615515--79615801	141	2.0	141	89	2	434	43	19	12	24	1.86
79615540--79615826	23	12.3	23	73	12	194	43	18	13	24	1.85
79616560--79616626	28	2.4	28	89	0	98	32	26	11	28	1.92
79623031--79623321	23	12.4	22	75	9	159	42	18	14	24	1.87
79623046--79623268	48	4.7	48	70	19	166	43	18	13	24	1.86
79623011--79623297	70	4.1	70	89	2	432	42	19	13	24	1.87
79624056--79624153	28	3.5	27	84	5	124	30	26	12	30	1.92
79636444--79636469	6	4.3	6	100	0	52	50	0	0	50	1.00
79636740--79636795	28	2.0	28	96	0	103	51	0	0	48	1.00
79637014--79637068	21	2.6	21	82	8	58	29	1	25	43	1.65
79639507--79639557	23	2.2	23	89	0	75	25	11	21	41	1.87
79639513--79639565	23	2.3	23	86	0	70	30	9	18	41	1.82
79643165--79643892	165	4.4	160	74	12	513	40	18	12	28	1.87
79644468--79645342	164	5.3	164	88	1	1166	41	16	14	28	1.87
79644468--79645342	324	2.7	326	86	1	1189	41	16	14	28	1.87
79645511--79645904	165	2.4	164	84	5	510	43	14	12	29	1.82
79650698--79650732	14	2.5	14	80	0	52	51	0	2	45	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79651614--79651668	26	2.0	28	86	6	78	43	0	1	54	1.10
79651804--79652026	94	2.4	94	88	3	324	32	21	8	37	1.85
79664973--79665282	41	7.6	41	93	1	487	22	20	26	30	1.99
79665302--79665339	20	2.0	18	90	10	58	26	7	5	60	1.46
79669869--79670091	43	5.2	43	88	0	311	28	31	17	22	1.96
79669869--79670139	129	2.1	129	83	2	330	29	30	17	22	1.97
79669867--79670142	86	3.2	85	81	5	286	30	30	17	22	1.96
79672592--79672630	16	2.4	17	87	12	55	66	2	0	30	1.05
79673094--79673132	20	2.0	20	94	0	69	38	23	20	17	1.93
79674212--79674240	3	9.7	3	100	0	58	68	0	31	0	0.89
79674182--79674225	23	1.9	23	86	9	63	68	2	20	9	1.28
79674576--79674880	151	2.0	151	94	0	540	27	15	11	44	1.81
79674771--79674957	101	1.8	101	83	5	248	26	11	10	51	1.70
79675192--79675354	85	2.0	79	84	7	209	25	10	10	53	1.66
79675078--79675462	197	2.0	195	86	6	537	25	12	10	50	1.72
79676038--79676086	7	6.9	7	76	4	53	32	46	0	20	1.51
79676048--79676089	15	2.9	15	89	3	59	35	47	0	16	1.47
79676049--79676094	22	2.1	22	83	0	56	39	43	0	17	1.49
79676109--79676150	14	2.9	14	82	6	57	35	35	0	28	1.58
79676105--79676151	15	3.3	15	82	8	62	40	31	0	27	1.57
79676471--79676655	73	2.5	74	87	6	275	24	25	22	27	2.00
79676554--79676881	114	2.9	114	85	3	460	25	26	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79678504--79678545	18	2.3	18	95	0	75	45	28	4	21	1.72
79678918--79679016	47	2.1	48	81	5	112	41	2	9	47	1.47
79679002--79679053	11	5.2	10	78	15	54	13	0	3	82	0.80
79679002--79679053	20	2.7	19	91	8	79	13	0	3	82	0.80
79679003--79679061	20	3.0	20	82	9	68	16	0	3	79	0.86
79679000--79679063	27	2.3	29	81	5	87	20	0	3	76	0.92
79679049--79679097	9	5.4	9	88	9	73	30	8	0	61	1.25
79679047--79679102	17	3.2	18	87	10	80	33	7	0	58	1.25
79679059--79679102	8	5.2	8	86	13	54	34	9	0	56	1.31
79679092--79679145	21	2.6	21	72	21	51	44	3	0	51	1.19
79679340--79679410	26	2.6	28	72	16	69	36	42	0	21	1.53
79679483--79679547	14	4.6	14	76	0	58	36	40	0	23	1.55
79680137--79680814	114	6.0	114	90	0	1025	28	25	21	23	1.99
79685967--79686003	17	2.2	17	95	0	65	29	40	5	24	1.77
79686436--79686477	22	1.9	22	85	9	59	42	7	4	45	1.52
79687257--79687378	57	2.1	57	96	0	226	34	1	15	48	1.55
79697334--79697454	30	4.0	30	80	0	89	41	15	12	30	1.84
79697324--79697731	60	6.6	59	73	9	307	41	16	10	31	1.82
79697324--79697719	90	4.3	90	82	10	449	41	16	10	31	1.82
79697411--79697497	43	2.0	43	95	0	156	42	14	10	32	1.80
79697454--79697731	30	9.3	30	87	0	385	42	16	10	30	1.81
79697381--79697523	73	2.0	73	88	2	216	39	16	11	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79698420--79698452	17	2.0	17	88	5	50	36	6	0	57	1.23
79704635--79705010	90	4.2	90	89	3	532	43	15	10	30	1.80
79704614--79705010	30	13.2	30	83	5	453	43	15	10	30	1.80
79705263--79705313	26	2.0	26	100	0	102	27	15	23	33	1.95
79705265--79705319	26	2.2	25	90	6	85	25	16	25	32	1.96
79717126--79717193	6	11.3	6	100	0	136	32	16	0	51	1.45
79723538--79724162	23	27.2	23	70	12	261	34	4	23	37	1.76
79723458--79724335	46	19.2	46	75	6	586	32	4	23	38	1.75
79723449--79724271	230	3.6	230	93	0	1353	33	4	23	38	1.75
79724173--79724321	23	6.6	22	78	10	133	29	2	26	41	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313