Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  202  of  313  ( 37448 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62037123--62037160
3
12.7
3
100
0
76
68
0
0
31
0.90
62049238--62049263
13
2.0
13
100
0
52
46
7
15
30
1.74
62050098--62050136
21
1.9
21
89
5
62
25
15
25
33
1.95
62054124--62054152
12
2.3
13
94
5
51
0
24
0
75
0.80
62054213--62054269
3
19.0
3
100
0
114
33
0
0
66
0.92
62056342--62056466
61
2.1
57
80
11
137
37
6
6
49
1.54
62060329--62060388
27
2.2
27
78
0
66
35
15
21
28
1.93
62061723--62061756
18
1.9
17
88
5
50
38
2
0
58
1.13
62061916--62061953
20
1.9
20
88
0
58
50
5
0
44
1.24
62064662--62064692
7
4.4
7
95
0
53
16
25
0
58
1.38
62077284--62077313
16
1.9
15
93
6
51
26
3
0
70
1.03
62077047--62077821
321
2.4
318
92
3
1299
30
10
8
49
1.67
62078213--62078272
5
12.4
5
78
7
61
0
38
0
61
0.96
62078215--62078283
10
6.6
10
71
25
54
0
37
0
62
0.96
62079510--62079569
18
3.2
19
76
23
56
48
0
0
51
1.00
62081193--62081244
21
2.5
21
83
0
77
13
19
42
25
1.87
62083944--62084079
21
6.5
21
74
8
107
21
21
14
42
1.88
62083944--62083991
20
2.3
20
85
3
60
22
16
16
43
1.87
62083965--62084080
42
2.8
42
82
1
135
21
22
13
42
1.88
62083972--62084093
42
2.9
40
80
4
118
20
22
14
41
1.89
62091177--62091279
21
5.0
21
79
1
100
17
19
18
44
1.87
62091177--62091285
42
2.6
42
85
1
139
17
20
18
44
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62091408--62091676
43
6.3
43
87
1
387
21
28
21
28
1.98
62092181--62092242
25
2.4
26
89
2
90
40
1
14
43
1.55
62092181--62092252
17
4.2
17
72
13
58
40
1
13
44
1.53
62092345--62092411
17
3.9
18
80
9
77
35
0
17
46
1.49
62092348--62092411
9
7.4
9
84
5
80
32
0
18
48
1.49
62092348--62092440
26
3.5
25
79
10
87
34
1
17
47
1.55
62092390--62092434
21
2.1
21
84
8
56
35
2
15
46
1.58
62094305--62094364
31
1.9
31
96
0
111
33
23
15
28
1.94
62096591--62096857
75
3.4
74
67
19
193
27
23
18
30
1.98
62096343--62096852
160
3.2
160
93
1
878
28
24
17
30
1.97
62097151--62097193
19
2.3
19
91
0
68
32
4
0
62
1.15
62097116--62097174
30
2.0
30
86
6
84
23
1
0
74
0.91
62097153--62097193
9
4.4
9
87
6
55
31
4
0
63
1.15
62097290--62097607
90
3.7
89
82
5
332
43
25
2
28
1.66
62097446--62097642
88
2.2
89
81
7
213
42
25
1
29
1.64
62097621--62097697
14
5.6
14
73
6
50
35
42
0
22
1.54
62098301--62098735
114
3.8
114
92
0
710
28
28
22
21
1.99
62103496--62103583
46
1.9
46
86
4
124
38
19
20
21
1.93
62103734--62103807
22
3.3
22
75
5
60
41
20
21
16
1.90
62103797--62103908
32
3.5
31
74
11
102
41
23
16
17
1.89
62104081--62104158
24
3.2
24
85
0
93
44
24
8
21
1.81
62104115--62104163
24
2.0
24
92
0
80
42
24
8
24
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62104199--62104430
27
8.6
27
75
7
148
21
16
21
40
1.92
62104199--62104430
81
2.9
80
79
10
256
21
16
21
40
1.92
62104199--62104430
54
4.3
55
76
6
170
21
16
21
40
1.92
62104658--62104693
17
2.1
18
89
5
56
22
33
22
22
1.97
62109034--62109107
34
2.2
34
82
4
87
22
22
24
29
1.99
62110146--62110193
22
2.1
24
84
7
64
54
2
2
41
1.24
62116006--62116158
66
2.3
66
85
2
200
25
17
24
32
1.97
62116371--62116406
11
3.4
10
92
7
54
75
0
5
19
1.00
62119194--62119274
34
2.4
35
80
14
107
34
4
16
44
1.69
62123483--62123526
20
2.2
20
84
12
54
36
2
0
61
1.09
62127554--62127610
21
2.7
21
73
15
55
29
5
1
63
1.27
62127842--62127884
22
2.0
22
86
4
61
39
0
4
55
1.20
62128361--62128400
16
2.5
16
87
0
53
42
5
2
50
1.37
62128374--62128435
22
2.7
23
85
5
81
46
0
1
51
1.10
62141289--62141333
6
8.0
6
78
14
51
77
0
22
0
0.76
62141290--62141335
16
2.8
17
83
6
67
76
0
23
0
0.79
62141288--62141333
17
2.9
15
78
15
56
78
0
21
0
0.76
62141597--62141815
108
2.0
106
85
3
296
25
17
8
48
1.75
62142723--62142817
45
2.1
45
80
7
104
27
15
26
30
1.96
62142791--62143071
89
3.2
89
89
1
395
27
21
24
26
1.99
62143286--62144025
130
5.7
130
89
1
1112
32
22
19
25
1.97
62143286--62144015
390
1.9
389
95
0
1309
32
22
19
25
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62146228--62146267
21
1.9
21
84
0
53
25
22
12
40
1.89
62150971--62151028
29
2.0
29
83
6
73
50
12
5
32
1.62
62153510--62153772
40
6.6
39
86
4
278
25
27
21
25
1.99
62153510--62153772
120
2.2
119
82
4
307
25
27
21
25
1.99
62153704--62153781
40
1.9
41
82
10
97
26
28
20
24
1.99
62163299--62163603
91
3.4
91
91
4
501
47
3
3
45
1.37
62163611--62163664
15
3.4
16
80
19
53
46
1
0
51
1.11
62163596--62163785
59
3.3
57
70
20
169
44
1
3
50
1.29
62163731--62163765
18
2.0
17
88
5
52
45
0
0
54
0.99
62163596--62163805
55
3.6
54
72
18
163
44
1
3
50
1.29
62163922--62164017
44
2.1
46
90
3
151
37
30
3
29
1.73
62163999--62164036
16
2.4
16
90
0
58
26
36
2
34
1.71
62169107--62169146
21
1.9
21
85
10
55
45
22
15
17
1.85
62169728--62169869
65
2.2
65
83
3
171
40
21
16
21
1.91
62171039--62171120
25
3.3
25
81
6
103
35
17
20
26
1.95
62178299--62178345
20
2.3
20
85
0
58
63
4
17
14
1.45
62178298--62178385
19
4.5
19
69
16
54
60
3
18
18
1.50
62183745--62183833
44
2.0
44
97
0
169
52
19
13
14
1.74
62190041--62190159
30
3.8
31
68
15
93
47
5
5
41
1.49
62190043--62190182
64
2.2
64
97
1
264
51
5
4
39
1.43
62190304--62190354
24
2.1
25
92
3
86
19
5
5
68
1.31
62199073--62199210
39
3.5
39
93
0
231
44
22
4
28
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62199120--62199181
17
3.4
17
69
26
54
46
24
1
27
1.62
62202369--62202409
20
2.0
20
90
0
64
24
9
9
56
1.62
62205429--62205465
18
2.1
18
94
0
65
51
10
16
21
1.74
62206809--62206836
13
2.2
13
100
0
56
39
0
21
39
1.54
62214856--62214922
16
3.9
16
72
14
62
49
1
20
28
1.58
62214859--62214932
36
2.1
36
97
0
139
51
2
20
25
1.60
62215167--62215355
59
3.2
59
73
11
222
54
3
0
41
1.20
62219814--62220044
64
3.6
64
99
0
453
22
26
11
38
1.88
62222411--62222445
18
2.0
17
88
5
52
45
0
0
54
0.99
62222304--62222702
120
3.3
120
99
0
782
43
2
4
49
1.36
62222531--62222565
18
2.0
17
88
5
52
45
0
0
54
0.99
62222651--62222685
18
2.0
17
88
5
52
45
0
0
54
0.99
62222921--62222989
16
4.2
16
92
3
120
36
37
1
24
1.65
62222921--62222989
33
2.1
32
94
2
120
36
37
1
24
1.65
62225424--62225466
18
2.4
18
81
11
54
25
0
4
69
1.07
62227465--62227706
120
2.0
119
97
0
457
47
7
27
18
1.74
62228770--62228907
34
4.0
33
72
13
102
42
0
14
43
1.45
62228845--62228907
34
1.9
33
93
6
110
38
0
14
47
1.44
62228839--62228912
34
2.3
31
84
13
105
41
0
12
45
1.41
62229017--62229043
12
2.2
12
100
0
54
55
7
14
22
1.64
62229103--62229159
25
2.3
23
78
18
62
50
5
0
43
1.24
62241148--62241191
12
3.8
11
79
8
52
61
2
4
31
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62241079--62241486
98
4.2
98
100
0
816
54
4
6
33
1.48
62241246--62241289
12
3.8
11
79
8
52
61
2
4
31
1.28
62241344--62241387
12
3.8
11
79
8
52
61
2
4
31
1.28
62241442--62241485
12
3.8
11
79
8
52
61
2
4
31
1.28
62241591--62241634
21
2.3
18
84
11
52
70
0
9
20
1.14
62244015--62244269
108
2.3
109
81
3
282
36
12
13
37
1.82
62244062--62244269
109
1.9
108
86
1
290
35
12
13
37
1.83
62246144--62246480
51
6.6
51
87
1
426
37
23
10
28
1.88
62246144--62246488
153
2.3
153
86
1
476
37
22
11
28
1.89
62246389--62246470
27
3.2
26
70
16
71
39
23
10
26
1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313