genome.fa.s26.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  96304692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   

This is table  118  of  313  ( 37448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38158377--38158444	31	2.2	31	89	7	102	88	8	2	0	0.62
38159357--38159395	19	2.1	19	100	0	78	25	12	10	51	1.71
38159297--38159469	92	1.9	94	92	2	296	27	15	19	38	1.91
38159378--38160716	75	17.7	74	89	4	1303	26	15	20	36	1.93
38159388--38160710	155	8.7	153	86	6	1127	27	16	20	36	1.94
38160920--38161044	29	4.2	29	80	11	130	31	24	5	39	1.78
38161266--38161299	12	2.8	12	86	0	50	73	14	11	0	1.10
38161416--38161446	16	1.9	16	93	0	53	74	0	25	0	0.82
38161549--38161621	4	17.8	4	73	16	60	73	1	24	0	0.90
38161552--38161612	13	4.8	13	79	18	74	75	0	24	0	0.80
38161549--38161637	29	3.0	30	79	12	96	73	1	25	0	0.91
38161550--38161637	24	3.7	24	78	14	94	73	1	25	0	0.90
38161561--38161599	6	6.5	6	82	11	53	71	0	28	0	0.86
38161552--38161636	38	2.4	37	83	13	106	74	1	24	0	0.89
38162368--38162568	17	10.8	17	69	18	109	32	13	10	43	1.78
38162377--38162419	21	2.1	20	91	4	68	37	13	9	39	1.78
38162416--38162578	75	2.1	75	89	4	247	34	12	9	42	1.76
38162616--38162651	17	2.2	17	90	5	56	36	5	11	47	1.63
38162416--38162672	37	6.6	38	73	16	188	34	11	10	43	1.75
38162657--38162763	37	2.9	36	80	13	112	37	11	10	41	1.75
38162653--38162763	35	3.1	34	81	10	123	39	10	9	39	1.74
38162603--38162722	57	2.1	58	84	4	154	35	10	11	42	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38162606--38162728	20	6.4	19	69	17	85	38	10	10	40	1.74
38163694--38163951	131	2.0	132	96	0	482	37	10	8	42	1.71
38170680--38170750	35	2.0	35	97	0	133	38	11	4	46	1.59
38173894--38173930	19	2.0	20	89	10	60	54	8	5	32	1.53
38189271--38189390	45	2.7	45	78	8	120	38	14	19	28	1.90
38189352--38189509	31	5.1	31	75	4	140	37	15	17	29	1.91
38189350--38189509	62	2.6	62	80	2	178	38	15	17	28	1.91
38195579--38195666	31	2.9	30	78	5	88	32	12	14	39	1.84
38196090--38196123	17	2.0	17	94	0	59	61	0	5	32	1.20
38201613--38201638	7	3.7	7	100	0	52	15	0	69	15	1.20
38201639--38201698	30	2.0	30	83	3	75	41	0	38	20	1.52
38201911--38201947	9	4.1	9	92	0	65	29	10	13	45	1.77
38209199--38209240	21	2.0	20	82	13	50	61	4	2	30	1.29
38210999--38211037	13	3.0	13	96	0	69	15	5	46	33	1.68
38211257--38211313	25	2.3	25	81	6	62	3	29	0	66	1.08
38213181--38213216	15	2.4	15	90	0	54	69	2	0	27	1.02
38213212--38213313	30	3.4	31	83	5	122	29	22	3	44	1.71
38213539--38213587	20	2.4	21	89	3	73	69	6	12	12	1.35
38213684--38213742	3	18.0	3	83	13	64	64	1	33	0	1.04
38213684--38213752	13	5.2	13	81	11	70	68	1	30	0	0.99
38221537--38221638	30	3.4	31	83	5	122	29	22	3	44	1.71
38221902--38221951	10	5.2	10	80	7	59	70	0	30	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38221905--38221947	19	2.3	19	88	11	63	69	0	30	0	0.88
38222007--38222052	3	15.0	3	82	13	58	63	0	36	0	0.95
38222010--38222038	10	2.9	10	100	0	58	62	0	37	0	0.96
38222007--38222052	13	3.7	13	81	18	62	63	0	36	0	0.95
38222353--38222412	19	3.2	19	71	19	54	30	15	6	48	1.70
38222591--38222753	17	9.4	17	78	9	159	30	12	10	47	1.74
38222591--38222753	35	4.7	34	79	8	168	30	12	10	47	1.74
38222714--38222842	35	3.4	37	75	13	120	36	9	12	41	1.75
38224640--38224734	38	2.5	38	85	0	127	36	14	16	31	1.90
38232050--38232113	31	2.0	31	82	14	78	35	1	4	57	1.29
38238420--38238473	28	1.9	28	92	0	90	38	3	0	57	1.17
38238827--38238857	16	1.9	16	93	0	53	61	3	0	35	1.12
38242221--38242281	27	2.3	27	82	0	77	18	24	32	24	1.97
38245352--38245572	21	10.4	21	68	21	113	57	11	0	31	1.35
38245357--38245419	19	3.2	19	86	6	72	57	9	0	33	1.31
38245474--38245568	48	2.0	47	93	6	165	56	12	0	30	1.36
38245341--38245648	61	4.9	62	73	17	230	57	11	0	31	1.34
38245660--38245685	7	3.7	7	100	0	52	61	0	0	38	0.96
38247101--38247160	3	19.7	3	81	3	66	56	1	3	38	1.26
38248522--38248576	27	2.0	27	82	0	65	27	29	18	25	1.98
38257463--38257515	26	1.9	29	85	11	76	33	1	0	64	1.05
38262447--38262492	12	4.0	11	81	10	56	23	15	13	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38263889--38263983	23	4.2	22	77	7	77	15	14	27	42	1.86
38263904--38263989	23	3.8	22	78	6	91	16	16	25	41	1.88
38268838--38268912	37	2.0	38	86	2	107	56	9	20	14	1.66
38272624--38272668	21	2.1	21	87	0	63	37	0	2	60	1.09
38273528--38273665	63	2.2	63	97	0	258	21	5	55	18	1.62
38273528--38273779	42	6.0	41	76	9	129	22	5	53	19	1.65
38273528--38273731	63	3.2	63	86	4	225	22	4	54	18	1.62
38273650--38273779	63	2.1	63	86	2	181	23	5	51	20	1.67
38273545--38273759	105	2.0	105	95	1	387	23	5	53	16	1.64
38280154--38280202	22	2.2	22	92	0	80	28	30	20	20	1.98
38285246--38285444	42	4.7	42	80	4	213	44	15	21	18	1.87
38285260--38285444	21	8.8	21	74	0	136	44	15	21	17	1.86
38285274--38285435	84	1.9	84	88	0	243	43	16	21	18	1.88
38299767--38299836	15	4.6	15	72	10	52	40	2	1	55	1.23
38301004--38301066	9	6.9	9	85	1	81	23	11	22	42	1.85
38308305--38308339	17	2.1	16	89	5	52	77	0	22	0	0.78
38308305--38308339	8	4.2	8	85	7	52	77	0	22	0	0.78
38309190--38309235	24	1.9	24	86	8	67	32	4	15	47	1.65
38310356--38310400	24	1.9	23	90	4	72	62	0	0	37	0.96
38322091--38322121	3	10.3	3	100	0	62	67	0	0	32	0.91
38324857--38324884	13	2.2	13	100	0	56	28	7	14	50	1.69
38336588--38336693	50	2.1	50	100	0	212	30	19	1	48	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38342519--38342565	24	2.0	24	83	8	60	17	34	0	48	1.47
38346566--38346619	10	5.7	10	74	12	51	59	1	1	37	1.19
38347161--38347192	16	2.0	16	93	0	55	21	6	0	71	1.07
38347260--38347414	20	7.6	20	73	11	111	32	2	1	62	1.20
38347285--38347329	18	2.6	17	83	13	56	26	0	4	68	1.08
38347262--38347414	11	15.0	10	69	14	66	32	2	1	62	1.20
38347331--38347410	31	2.5	31	76	17	85	33	5	0	61	1.18
38347224--38347411	42	4.6	41	73	13	113	34	2	2	61	1.22
38354778--38354880	36	2.9	36	77	0	98	23	32	16	28	1.96
38356676--38356875	9	20.2	9	68	20	57	61	2	5	30	1.32
38356730--38356777	19	2.5	20	79	6	62	64	2	0	33	1.05
38356823--38356848	10	2.6	10	100	0	52	69	0	7	23	1.14
38357043--38357136	9	10.2	9	68	11	57	27	3	1	68	1.12
38357043--38357136	27	3.4	28	79	13	97	27	3	1	68	1.12
38357065--38357107	19	2.3	18	81	14	52	23	4	0	72	1.04
38362183--38362268	43	2.0	43	90	4	138	23	23	1	52	1.54
38372149--38372210	21	3.0	21	83	2	63	8	8	12	70	1.32
38373553--38373618	31	2.1	31	100	0	132	39	13	0	46	1.43
38377629--38377654	11	2.4	11	100	0	52	38	7	0	53	1.30
38377651--38377711	9	6.4	9	75	17	61	24	1	1	72	1.03
38377605--38377723	39	3.0	40	87	6	181	31	3	0	63	1.16
38377703--38377762	26	2.3	27	82	2	68	30	1	3	65	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38377915--38377971	29	1.9	30	89	3	89	38	0	42	19	1.51
38380940--38380981	17	2.6	16	85	7	57	30	2	0	66	1.04
38384682--38384725	15	3.1	15	81	18	51	54	4	34	6	1.47
38384691--38384734	3	14.7	3	80	0	52	56	4	34	4	1.40
38387012--38387050	13	2.9	13	85	14	53	53	0	0	46	1.00
38387151--38387199	15	3.5	15	68	21	52	53	0	4	42	1.20
38401914--38401975	32	1.9	32	93	6	108	46	0	16	37	1.47
38403480--38403551	32	2.3	32	95	2	128	37	13	16	31	1.88
38407106--38407139	13	2.5	13	90	4	50	64	2	0	32	1.08
38407106--38407149	11	3.5	13	81	15	56	61	2	0	36	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313