genome.fa.s6.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  106  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35067492--35067537	13	3.5	13	72	21	51	23	23	26	26	2.00
35070896--35070951	24	2.4	24	87	3	78	17	28	23	30	1.97
35081479--35081503	13	1.9	13	100	0	50	16	32	28	24	1.96
35084140--35084206	27	2.5	26	95	2	89	32	26	11	28	1.92
35084140--35084234	28	3.4	28	89	2	129	32	27	12	27	1.93
35091800--35092026	79	2.9	80	85	3	273	26	21	26	25	2.00
35091800--35091987	40	4.7	40	86	3	263	25	21	27	25	2.00
35106847--35106877	16	1.9	16	93	0	53	35	22	0	41	1.54
35106844--35106883	20	2.0	20	85	0	53	37	22	0	40	1.54
35107069--35107269	53	3.8	54	81	10	193	21	24	18	35	1.95
35114376--35114406	16	1.9	16	93	0	53	35	22	0	41	1.54
35114373--35114412	20	2.0	20	85	0	53	37	22	0	40	1.54
35114597--35114802	53	3.9	54	83	8	228	20	24	18	35	1.95
35118449--35118493	22	2.0	22	100	0	90	24	17	26	31	1.97
35122283--35122349	32	2.1	32	91	0	107	26	28	8	35	1.87
35122425--35122576	42	3.6	42	85	0	196	31	27	18	22	1.97
35130286--35130374	42	2.1	42	81	8	101	30	26	16	25	1.97
35130328--35130451	48	2.6	48	82	0	140	29	26	16	26	1.97
35130425--35130680	37	7.0	36	85	3	332	28	28	15	26	1.96
35130423--35130680	73	3.5	72	90	1	381	28	28	15	26	1.96
35134973--35135025	27	1.9	27	84	3	70	41	13	11	33	1.80
35134982--35135080	27	3.7	27	79	5	94	39	17	12	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35135066--35135127	27	2.3	27	85	0	79	37	27	6	29	1.82
35135077--35135270	27	6.8	27	77	13	138	28	25	8	37	1.85
35135077--35135270	54	3.4	55	73	16	162	28	25	8	37	1.85
35135098--35135172	37	2.0	38	86	2	107	25	33	5	36	1.79
35135139--35135271	27	5.0	27	88	0	178	27	21	9	40	1.85
35135263--35135441	54	3.3	53	83	6	225	41	20	8	29	1.81
35135249--35135443	81	2.4	81	87	4	261	40	21	8	30	1.82
35135263--35135441	27	6.7	26	84	8	198	41	20	8	29	1.81
35135263--35135468	27	7.7	26	77	14	115	41	20	8	29	1.82
35135298--35135469	54	3.2	53	79	12	174	41	20	8	29	1.81
35135480--35135531	27	1.9	27	88	7	79	40	13	11	34	1.81
35135572--35135649	27	2.9	27	77	11	88	35	21	20	21	1.96
35136892--35136962	20	3.5	20	92	0	115	33	11	22	32	1.90
35136904--35136957	11	5.3	11	70	17	53	35	12	20	31	1.90
35137009--35137202	25	8.0	24	86	5	225	29	19	22	28	1.98
35140614--35140680	32	2.1	32	97	0	125	29	28	8	32	1.88
35140745--35140914	42	4.0	42	81	3	198	33	26	17	22	1.96
35145744--35145923	35	5.1	35	75	4	166	41	18	10	29	1.84
35147113--35147711	27	22.2	27	85	4	724	27	21	9	41	1.84
35147716--35147910	27	7.2	27	83	2	221	35	17	20	27	1.94
35147716--35147911	54	3.6	54	84	2	250	35	17	19	27	1.95
35147716--35147892	81	2.2	81	86	0	246	36	18	19	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35148114--35148187	27	2.8	26	83	4	76	21	21	20	36	1.95
35148473--35148553	27	3.0	27	83	5	85	16	22	23	38	1.93
35148697--35148858	6	26.8	6	74	17	140	20	16	13	50	1.78
35148672--35148858	85	2.2	85	93	0	311	20	17	12	49	1.79
35156693--35156872	35	5.1	35	77	2	173	41	19	8	30	1.82
35173752--35173806	22	2.5	22	93	0	92	36	27	21	14	1.93
35179862--35179886	13	1.9	13	100	0	50	32	0	16	52	1.44
35189854--35189966	49	2.3	49	82	8	133	23	25	20	30	1.98
35189984--35190111	46	2.7	48	78	4	152	24	28	19	28	1.99
35198314--35198338	12	2.1	12	100	0	50	40	24	16	20	1.91
35198518--35198571	20	2.7	20	85	0	72	33	16	18	31	1.93
35198619--35198679	30	2.0	30	93	0	104	37	4	18	39	1.72
35199124--35199203	39	2.1	39	100	0	160	35	12	10	42	1.76
35202180--35202211	6	5.3	6	96	0	55	50	12	0	37	1.41
35204357--35204456	9	10.6	10	70	17	63	63	2	2	33	1.17
35204395--35204460	19	3.6	18	75	17	64	60	1	1	36	1.15
35204396--35204487	37	2.4	39	78	12	100	60	3	3	32	1.29
35204344--35204502	56	2.8	57	79	12	152	60	2	3	33	1.28
35204371--35204527	10	16.7	10	67	17	52	61	3	3	31	1.30
35204658--35204762	20	5.3	20	69	21	69	39	2	1	56	1.25
35205597--35205747	78	1.9	78	86	8	212	56	7	6	29	1.52
35210056--35210575	194	2.8	189	90	3	811	41	21	11	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35215034--35215101	33	2.1	33	100	0	136	26	8	14	50	1.72
35218609--35218731	49	2.5	49	85	0	156	24	11	30	34	1.90
35224709--35224888	48	3.8	47	81	1	207	22	29	21	27	1.99
35224708--35224888	96	1.9	96	86	2	256	22	29	20	27	1.99
35227129--35227213	24	3.5	24	85	7	102	25	30	15	28	1.96
35227150--35227236	24	3.6	24	85	0	102	25	32	18	24	1.97
35236066--35236243	48	3.7	47	76	10	164	20	28	22	28	1.99
35236069--35236246	96	1.9	96	81	2	223	21	28	22	27	1.99
35240126--35240171	23	2.0	23	100	0	92	39	8	8	43	1.66
35242822--35242877	16	3.5	16	85	0	76	37	7	28	26	1.83
35242890--35243011	49	2.5	49	100	0	244	29	3	30	36	1.73
35243116--35243238	58	2.1	58	86	3	167	53	4	0	42	1.19
35246588--35246630	16	2.5	17	85	7	52	51	0	2	46	1.13
35246594--35246652	21	2.8	21	82	10	68	55	0	1	42	1.09
35246642--35246675	17	1.9	17	88	5	50	79	2	8	8	1.03
35246651--35246723	16	4.5	17	66	8	53	72	4	19	4	1.17
35246705--35246729	6	4.2	6	100	0	50	84	0	16	0	0.63
35246651--35246736	21	3.9	22	73	13	70	73	3	19	3	1.13
35246651--35246729	33	2.4	33	77	6	81	73	3	18	3	1.14
35246652--35246734	27	3.1	27	76	6	89	72	3	20	3	1.15
35246728--35246782	26	2.1	26	100	0	110	40	0	30	29	1.57
35247613--35247651	6	6.5	6	87	0	60	17	12	15	53	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35247613--35247651	12	3.2	12	96	0	69	17	12	15	53	1.72
35248407--35248432	13	2.0	13	100	0	52	0	23	38	38	1.55
35248408--35248441	13	2.6	13	90	0	50	2	20	38	38	1.68
35256954--35257536	155	3.8	156	90	1	861	28	1	19	50	1.56
35256958--35257536	311	1.9	308	88	2	890	28	1	19	50	1.56
35263569--35263604	19	2.0	19	89	10	58	66	0	2	30	1.06
35274531--35274583	22	2.5	22	93	3	90	16	11	22	49	1.78
35281222--35281439	40	5.5	40	90	2	316	24	22	27	25	2.00
35284322--35284351	12	2.5	12	94	0	51	50	10	13	26	1.73
35290426--35290693	104	2.6	105	92	1	441	19	20	30	29	1.97
35297801--35298065	103	2.6	104	92	2	437	18	21	30	30	1.97
35297980--35298031	27	1.9	27	96	0	95	13	25	32	28	1.93
35303075--35303449	188	2.0	187	96	0	687	31	8	24	35	1.85
35318783--35319255	47	10.1	47	93	1	754	32	11	29	25	1.92
35318876--35318951	23	3.3	23	66	23	68	32	10	30	26	1.90
35318878--35318955	25	3.2	25	66	23	76	30	10	30	28	1.90
35319229--35319319	46	2.0	46	88	0	137	34	7	31	26	1.85
35320434--35320540	52	2.1	52	100	0	214	26	11	11	51	1.71
35323715--35323899	79	2.3	82	83	7	229	25	27	22	24	2.00
35323715--35323899	40	4.7	40	83	6	225	25	27	22	24	2.00
35327084--35327268	40	4.7	40	84	6	207	24	21	27	27	1.99
35335100--35335285	40	4.7	40	84	5	225	24	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35335153--35335318	80	2.1	79	83	5	201	25	19	27	27	1.99
35337050--35337076	14	1.9	14	100	0	54	62	7	7	22	1.46
35368113--35368242	49	2.6	48	79	7	127	24	26	20	29	1.99
35368260--35368380	46	2.6	48	81	2	138	24	25	19	30	1.98
35376508--35376704	27	7.4	27	83	4	202	29	12	17	39	1.87
35376508--35376704	79	2.5	81	84	2	272	29	12	17	39	1.87
35377011--35377047	18	2.1	18	94	0	65	21	21	16	40	1.91
35378121--35378295	49	3.6	49	76	5	151	24	27	20	27	1.99
35384816--35384946	55	2.4	55	82	0	154	14	25	29	29	1.95
35394988--35395040	18	2.9	18	91	0	88	26	15	26	32	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345