genome.fa.s6.2.7.7.80.10.50.1000.274.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  274  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93332912--93333183	40	6.8	40	92	1	325	28	27	19	24	1.99
93332911--93333183	80	3.4	80	87	2	361	28	27	19	24	1.99
93340349--93340495	47	3.1	47	86	0	195	32	10	29	27	1.90
93340378--93340451	23	3.1	25	62	25	59	29	13	33	22	1.93
93340466--93340649	98	1.9	96	92	4	307	35	7	26	30	1.84
93340465--93340649	48	3.8	48	89	5	300	35	7	26	30	1.84
93340795--93340903	37	2.9	37	95	0	191	22	19	31	26	1.98
93342173--93342444	40	6.8	40	91	0	418	24	21	27	26	1.99
93346576--93346722	47	3.1	47	86	0	195	32	10	29	27	1.90
93346605--93346678	23	3.1	25	62	25	59	29	13	33	22	1.93
93346693--93346876	98	1.9	96	91	4	298	35	6	26	31	1.82
93346692--93346876	48	3.8	48	87	5	291	35	6	25	31	1.82
93347022--93347130	37	2.9	37	89	2	166	23	18	30	27	1.98
93356394--93356517	61	2.0	61	96	0	230	29	11	22	36	1.89
93361885--93361923	18	2.2	18	85	0	51	20	7	0	71	1.10
93374570--93374609	19	2.1	19	86	9	55	25	20	12	42	1.86
93375821--93376785	481	2.0	481	99	0	1912	33	15	23	26	1.95
93376889--93376942	27	2.0	27	96	0	99	22	16	29	31	1.96
93377002--93377117	39	3.0	39	85	0	160	27	14	23	34	1.94
93377138--93377183	22	2.1	22	95	0	83	30	17	6	45	1.73
93379079--93379132	26	2.2	23	83	9	63	35	0	0	64	0.94
93379132--93379175	19	2.3	19	84	4	52	47	0	13	38	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93379395--93379443	25	2.0	25	84	8	64	57	0	8	34	1.29
93383155--93383215	10	5.9	10	77	11	61	36	11	19	32	1.88
93383155--93383231	21	3.7	20	81	5	82	35	12	18	33	1.89
93383263--93383315	26	2.1	26	92	3	90	33	20	16	28	1.95
93384917--93385095	85	2.1	85	100	0	358	37	8	27	26	1.85
93386262--93386444	79	2.3	81	84	7	232	24	22	27	25	2.00
93386263--93386446	40	4.6	40	83	9	216	23	22	28	25	2.00
93386315--93386479	79	2.1	79	84	6	210	25	21	27	25	1.99
93394240--93394278	6	6.2	6	88	11	60	48	0	0	51	1.00
93398170--93398214	22	2.1	21	87	4	63	15	6	8	68	1.36
93406947--93407091	52	2.9	52	85	6	183	30	28	12	28	1.93
93410222--93410258	19	1.9	19	94	0	65	35	21	35	8	1.83
93410523--93410574	27	2.0	26	84	3	68	17	26	21	34	1.95
93410590--93410651	31	2.0	32	87	3	90	22	22	20	33	1.97
93410734--93410820	42	2.1	42	97	0	165	14	6	47	31	1.71
93411503--93411575	37	2.0	37	94	0	128	45	6	21	26	1.77
93421814--93421858	15	3.1	14	90	6	63	55	6	15	22	1.63
93436970--93437154	79	2.3	81	81	8	218	24	28	23	23	2.00
93436951--93437154	40	5.1	40	81	8	229	24	27	23	24	2.00
93446543--93446902	180	2.0	180	93	1	623	19	25	23	31	1.98
93449725--93449762	19	2.0	19	85	10	51	68	0	10	21	1.19
93453304--93453425	43	2.9	42	78	7	138	31	14	23	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93457348--93457668	47	6.7	47	91	2	498	33	7	29	29	1.85
93457347--93457668	96	3.4	96	92	2	535	33	7	29	29	1.85
93457787--93457888	37	2.8	37	90	0	159	26	18	28	26	1.98
93462432--93462503	35	2.1	35	100	0	144	22	12	16	48	1.79
93476294--93476405	43	2.6	44	79	10	117	31	21	19	27	1.97
93492373--93492627	94	2.7	94	81	7	297	21	25	20	32	1.98
93492373--93492624	48	5.3	48	80	7	243	21	25	20	32	1.97
93494665--93494711	23	2.0	23	100	0	94	25	19	17	38	1.92
93495443--93495583	76	1.9	76	100	0	282	21	16	23	39	1.92
93501939--93502033	24	4.0	24	86	6	131	29	22	20	28	1.98
93501960--93502032	23	3.1	23	94	2	119	31	20	19	28	1.97
93502084--93502150	20	3.3	20	93	0	116	32	20	11	34	1.90
93502084--93502139	11	5.5	11	71	16	57	32	19	12	35	1.89
93504426--93504595	92	1.8	93	91	1	279	29	29	19	21	1.98
93504421--93504589	46	3.7	46	74	15	159	30	28	18	22	1.97
93511992--93512161	92	1.8	93	92	1	288	29	28	20	22	1.98
93511987--93512156	46	3.7	46	75	14	170	30	27	19	22	1.98
93522698--93522827	48	2.7	49	81	2	154	23	30	20	26	1.98
93533540--93533600	30	2.0	30	83	0	77	29	26	8	36	1.85
93535396--93535440	19	2.3	19	92	3	72	26	11	13	48	1.75
93535404--93535441	19	2.0	19	100	0	76	26	10	15	47	1.78
93535522--93535564	18	2.5	18	85	7	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93535517--93535559	18	2.4	18	92	0	68	48	2	0	48	1.14
93538885--93538909	6	4.2	6	100	0	50	36	0	64	0	0.94
93539057--93539084	14	2.0	14	100	0	56	42	14	14	28	1.84
93548914--93548977	31	2.0	32	84	3	85	37	18	21	21	1.94
93548994--93549044	27	1.9	26	84	4	66	35	19	27	17	1.94
93554935--93555090	38	4.1	38	89	1	233	21	18	25	34	1.96
93554935--93555095	75	2.1	76	88	1	234	21	18	26	34	1.96
93555088--93555285	43	4.6	43	90	2	317	12	25	30	31	1.92
93560123--93560229	37	2.9	37	92	1	171	25	32	19	22	1.97
93560384--93560838	141	3.2	141	91	2	727	26	29	12	31	1.92
93560544--93560672	25	5.4	25	62	23	80	27	29	10	31	1.91
93560392--93560838	47	9.5	47	89	1	637	26	29	12	31	1.93
93564981--93565225	40	6.1	40	82	1	303	25	26	20	26	1.99
93564981--93565225	80	3.1	80	90	1	366	25	26	20	26	1.99
93566495--93566601	37	2.9	37	92	1	171	25	32	19	22	1.97
93566781--93567210	141	3.0	140	91	4	695	27	29	11	32	1.91
93566764--93567210	47	9.5	47	88	2	621	26	29	11	32	1.92
93574800--93574901	42	2.4	43	81	6	118	29	21	19	29	1.98
93584173--93584352	64	2.8	64	77	9	177	24	29	16	29	1.97
93587608--93587763	39	4.0	39	96	0	285	19	24	31	24	1.98
93597609--93597857	40	6.4	40	85	8	309	23	22	27	26	2.00
93597609--93597807	75	2.6	76	87	7	269	23	22	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93597621--93597843	115	1.9	115	86	7	319	22	22	27	26	1.99
93609941--93610062	46	2.7	46	80	12	151	26	17	30	26	1.97
93613517--93613605	29	3.1	29	85	1	117	26	32	14	25	1.95
93618765--93618929	46	3.6	46	78	11	167	27	18	29	24	1.98
93621729--93621760	14	2.2	15	94	5	57	56	18	0	25	1.42
93625941--93626187	122	2.0	123	96	0	451	39	20	12	27	1.88
93627756--93627994	48	5.0	48	84	5	277	25	30	17	25	1.97
93627757--93627994	96	2.5	96	86	1	316	25	31	18	25	1.97
93629834--93630330	27	18.6	27	75	9	374	38	17	10	33	1.84
93629853--93630293	241	1.8	241	87	3	665	38	16	11	33	1.84
93630323--93630712	27	14.4	27	86	1	458	36	17	20	25	1.95
93632489--93632713	40	5.6	40	85	2	290	25	24	27	23	2.00
93632489--93632749	80	3.3	80	83	3	303	26	23	26	23	2.00
93640693--93640917	40	5.6	40	80	7	233	25	24	26	23	2.00
93640693--93640953	80	3.3	80	82	3	294	26	24	26	23	2.00
93640695--93640917	120	1.9	121	82	4	290	25	24	26	22	2.00
93642760--93642824	22	3.0	22	80	8	78	21	26	21	30	1.98
93642983--93643062	26	3.0	26	89	3	115	16	23	22	37	1.93
93642990--93643062	27	2.8	26	89	4	110	17	24	20	36	1.94
93643180--93643222	6	7.0	6	80	15	52	18	18	16	46	1.84
93643183--93643246	25	2.6	25	89	0	92	18	20	14	46	1.83
93644630--93644861	49	4.7	49	77	6	243	29	26	16	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93644679--93644859	100	1.8	101	84	3	249	30	24	17	27	1.97
93660560--93660588	8	3.6	8	100	0	58	37	24	0	37	1.56
93664175--93664212	17	2.2	17	100	0	76	60	13	5	21	1.52
93671895--93672038	46	3.1	45	70	21	118	30	27	19	22	1.98
93673946--93674013	15	4.7	15	85	5	95	60	11	16	11	1.59
93673947--93674022	15	5.2	15	78	10	70	57	14	15	11	1.65
93676323--93676494	93	1.8	93	90	2	274	29	30	19	21	1.97
93676315--93676490	46	3.8	45	78	11	187	30	29	18	21	1.97
93681269--93681342	24	3.1	24	92	0	112	32	4	41	21	1.72
93682774--93682885	27	4.2	26	85	7	143	16	24	23	36	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345