Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  143  of  345  ( 41358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48378720--48378776
9
5.8
10
73
22
50
38
10
17
33
1.84
48378717--48378793
20
3.9
21
86
9
101
38
10
18
32
1.84
48378738--48378793
11
5.5
11
71
16
57
37
12
17
32
1.88
48378842--48378927
26
3.4
26
87
6
124
29
20
24
25
1.99
48379434--48379472
20
1.9
21
89
5
62
30
7
2
58
1.39
48387664--48387836
45
3.9
45
90
3
262
23
20
28
26
1.99
48388983--48389063
37
2.2
37
97
0
153
29
6
16
48
1.70
48392666--48392824
39
4.1
39
95
0
264
26
20
23
28
1.99
48404720--48404845
28
4.5
28
92
2
191
32
27
12
26
1.93
48413134--48413203
27
2.6
26
95
2
95
31
28
12
27
1.93
48413134--48413231
28
3.5
28
90
2
135
31
28
13
26
1.94
48413678--48413703
12
2.2
12
100
0
52
42
0
7
50
1.31
48421702--48421845
54
2.7
54
91
0
234
26
19
22
31
1.98
48428319--48428375
30
1.9
30
85
0
78
35
19
7
38
1.79
48442276--48442346
33
2.2
33
87
10
101
26
23
19
29
1.98
48443662--48443876
46
4.8
46
79
10
246
20
21
29
27
1.98
48443656--48443783
47
2.8
45
82
5
157
21
21
28
27
1.99
48443656--48443827
93
1.8
93
93
0
299
20
21
29
27
1.98
48445318--48445373
26
2.2
26
83
0
67
26
16
17
39
1.91
48464289--48464408
40
3.0
40
87
3
170
29
27
20
23
1.98
48468166--48468235
27
2.6
26
95
2
95
31
28
12
27
1.93
48468166--48468263
28
3.5
28
90
2
135
31
28
13
26
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48476544--48476669
28
4.5
28
92
2
191
32
27
12
26
1.93
48479582--48479687
40
2.7
39
81
7
133
38
18
17
24
1.93
48480701--48480783
31
2.7
30
89
7
123
26
28
15
28
1.96
48481004--48481076
26
2.8
26
79
2
85
27
20
24
27
1.99
48481122--48481169
11
4.6
11
80
12
57
33
18
12
35
1.89
48483386--48483724
180
1.9
180
86
2
493
34
19
6
38
1.79
48484285--48484680
151
2.6
151
88
0
594
30
26
17
25
1.97
48484494--48484675
101
1.8
100
86
4
267
31
26
16
25
1.96
48484293--48484680
50
7.7
50
74
3
330
30
26
16
26
1.97
48499521--48499583
5
13.4
5
75
18
55
41
6
19
33
1.76
48499521--48499566
18
2.6
18
100
0
92
43
4
17
34
1.69
48499531--48499595
20
3.3
21
89
8
77
41
9
18
30
1.82
48499645--48499806
26
6.3
26
82
3
197
29
20
20
28
1.98
48500017--48500107
38
2.7
31
77
22
112
34
17
24
24
1.96
48521351--48521402
3
17.3
3
100
0
104
32
0
0
67
0.91
48531242--48531307
27
2.5
28
78
14
77
30
7
16
45
1.75
48540653--48540837
40
4.7
40
82
6
198
25
27
22
24
2.00
48542352--48542484
67
2.0
67
86
5
189
39
17
21
21
1.92
48572731--48572772
21
2.0
21
85
0
57
30
19
50
0
1.48
48573069--48573170
43
2.4
43
86
0
150
33
18
18
29
1.95
48573154--48573390
43
5.4
43
81
7
278
20
19
21
38
1.93
48573069--48573390
86
3.7
87
79
7
285
24
19
20
35
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48578952--48579127
46
3.8
45
75
11
178
22
20
28
28
1.99
48578948--48579119
93
1.8
93
90
2
274
22
20
29
27
1.99
48583604--48583734
47
2.8
48
87
5
187
22
17
28
32
1.96
48583607--48583753
47
3.1
46
76
15
126
22
16
27
33
1.95
48584882--48585066
40
4.7
40
79
7
191
25
22
27
25
2.00
48584882--48585066
79
2.3
81
81
7
209
25
22
27
25
2.00
48584937--48585089
79
1.9
79
81
7
186
27
20
26
25
1.99
48593177--48593330
42
3.7
42
81
3
184
28
16
27
27
1.97
48593177--48593338
84
1.9
83
84
1
216
28
15
27
28
1.96
48607658--48607833
50
3.5
49
84
3
181
29
27
17
25
1.97
48610593--48610634
20
2.1
20
100
0
84
45
23
11
19
1.83
48613847--48613966
54
2.2
54
86
5
172
23
20
18
38
1.93
48613847--48613966
27
4.4
27
76
10
111
23
20
18
38
1.93
48613959--48614247
27
10.8
26
86
4
319
38
16
12
32
1.85
48613959--48614246
54
5.4
54
89
2
400
38
16
12
32
1.85
48613959--48614247
81
3.6
81
91
0
427
38
16
12
32
1.85
48616274--48616381
20
5.8
18
70
18
71
50
3
2
42
1.34
48616286--48616346
25
2.4
26
81
10
72
50
4
3
40
1.40
48616307--48616364
17
3.6
16
75
15
57
53
1
3
41
1.28
48618312--48618360
25
2.0
25
92
8
82
26
22
28
22
1.99
48618481--48618534
25
2.2
25
82
0
63
33
20
25
20
1.97
48618707--48618793
21
4.3
21
64
21
60
47
14
2
35
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48618675--48618793
59
2.0
59
98
0
229
44
15
3
36
1.64
48625282--48625402
47
2.6
47
86
5
156
24
13
29
32
1.93
48630504--48630535
15
2.1
15
94
0
55
68
9
6
15
1.36
48642121--48642149
15
2.0
15
93
6
51
48
6
0
44
1.29
48644487--48644563
40
2.0
37
80
16
86
45
1
2
50
1.23
48644532--48644564
16
1.9
17
88
11
50
39
0
0
60
0.97
48647472--48647507
18
2.0
18
100
0
72
33
5
11
50
1.61
48647732--48647865
65
2.1
65
90
2
207
33
14
5
46
1.68
48656894--48656974
43
1.9
42
89
2
126
24
29
19
25
1.99
48656892--48656996
42
2.5
43
84
1
131
31
27
17
23
1.97
48659322--48659413
45
2.0
45
100
0
184
42
10
13
33
1.78
48661529--48661562
16
2.1
16
89
10
52
26
0
2
70
1.01
48661763--48661825
28
2.2
28
85
0
90
33
6
28
31
1.82
48667023--48667125
50
2.1
50
100
0
206
35
5
17
40
1.74
48667216--48667278
28
2.2
28
88
0
90
30
6
31
31
1.83
48667437--48667480
15
3.0
14
86
6
61
25
0
2
72
0.96
48667436--48667479
7
6.0
7
86
7
61
27
0
2
70
0.99
48668184--48668238
20
2.7
21
80
2
67
43
34
0
21
1.53
48668282--48668319
15
2.6
14
88
8
58
42
36
0
21
1.53
48668345--48668387
14
3.2
13
87
9
59
46
32
0
20
1.51
48668487--48668516
15
2.1
15
93
6
53
33
36
0
30
1.58
48668524--48668569
22
2.1
22
83
0
56
41
41
2
15
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48668535--48668581
22
2.2
22
85
11
62
40
44
0
14
1.46
48668071--48668765
295
2.3
304
84
6
857
46
22
1
30
1.61
48681701--48681829
63
2.0
63
83
2
161
25
24
22
27
2.00
48681766--48681934
45
3.9
42
77
8
135
26
21
26
25
1.99
48689897--48689922
13
2.0
13
100
0
52
53
0
0
46
1.00
48691963--48691992
7
4.3
7
95
0
51
50
0
0
50
1.00
48709921--48710094
86
2.0
86
96
0
321
47
5
8
38
1.57
48710686--48710722
9
4.1
9
92
0
65
29
0
13
56
1.37
48710774--48710806
9
3.7
9
91
0
57
39
24
12
24
1.89
48710774--48710808
18
1.9
18
100
0
70
37
22
11
28
1.89
48711338--48711567
115
2.0
115
96
0
424
31
27
14
26
1.95
48712878--48712923
21
2.2
20
92
3
74
32
30
10
26
1.90
48713061--48713102
13
3.2
13
82
0
57
66
9
11
11
1.44
48715630--48715814
39
4.7
39
95
0
307
29
28
21
21
1.98
48719851--48719929
37
2.1
37
86
4
106
25
29
18
26
1.98
48720048--48720395
47
7.4
47
92
1
543
29
28
8
33
1.87
48723089--48723345
40
6.5
40
87
4
337
25
28
22
23
1.99
48723099--48723345
79
3.1
78
87
5
329
26
28
21
23
1.99
48723647--48723725
29
2.7
29
86
5
106
27
32
15
24
1.95
48723707--48723809
43
2.4
43
100
0
206
26
35
15
22
1.94
48726994--48727255
40
6.6
40
86
3
307
24
20
28
26
1.99
48726994--48727255
79
3.3
78
86
3
319
24
20
28
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48727033--48727290
79
3.3
80
84
3
229
25
20
28
25
1.99
48734479--48734741
40
6.6
40
87
3
316
24
20
28
26
1.99
48734518--48734776
80
3.3
80
84
3
238
25
20
28
25
1.99
48739615--48739662
25
1.9
26
83
8
64
33
22
16
27
1.96
48739714--48739754
20
2.2
19
86
8
57
31
9
19
39
1.84
48739797--48739867
25
2.8
25
83
10
90
28
23
21
26
1.99
48739822--48739894
25
3.0
23
82
11
74
30
21
20
27
1.98
48740087--48740169
30
2.7
30
81
5
105
33
16
25
24
1.96
48742810--48742855
17
2.6
18
83
12
60
39
13
10
36
1.79
48742779--48742855
17
4.4
17
76
14
59
38
14
11
35
1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345