Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  282  of  345  ( 41358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96343910--96343953
21
2.1
21
95
0
79
31
18
36
13
1.90
96348076--96348138
19
3.4
19
72
16
60
41
9
11
38
1.73
96349499--96349535
16
2.2
17
86
13
51
16
0
8
75
1.02
96349500--96349560
6
10.3
6
75
16
56
13
0
8
78
0.95
96349500--96349563
29
2.2
29
83
5
76
14
0
7
78
0.96
96359421--96359488
18
3.7
18
73
23
54
41
2
1
54
1.24
96359416--96359492
19
4.3
18
70
14
61
45
2
1
50
1.23
96360786--96360828
21
2.0
21
95
0
77
27
0
37
34
1.57
96360809--96360841
16
2.1
16
94
0
57
33
0
36
30
1.58
96360820--96360914
45
2.1
44
88
1
136
34
5
27
32
1.79
96361076--96361110
18
2.0
17
88
5
52
54
0
0
45
0.99
96361034--96361106
27
2.7
27
76
8
76
52
2
0
45
1.15
96360995--96361266
144
1.9
147
94
3
487
46
3
2
47
1.34
96361220--96361254
18
2.0
17
88
5
52
54
0
0
45
0.99
96361240--96361418
55
3.1
54
64
22
128
49
7
2
41
1.43
96361235--96361422
61
3.1
61
68
14
190
49
6
2
41
1.41
96361203--96361425
120
1.9
120
97
0
419
49
6
2
42
1.40
96361340--96361374
18
2.0
17
88
5
52
60
0
0
40
0.97
96361415--96361461
17
2.9
16
78
18
53
46
2
6
44
1.40
96361434--96361467
17
2.0
17
94
0
59
50
0
5
44
1.26
96361500--96361694
93
2.1
92
88
4
286
47
4
4
44
1.41
96365447--96365620
9
19.6
9
69
13
67
60
1
5
32
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96365511--96365593
19
4.6
18
79
8
80
63
1
6
28
1.25
96365511--96365611
18
5.6
17
75
14
80
63
0
5
29
1.25
96365517--96365646
27
4.7
28
75
12
110
60
1
6
31
1.30
96365517--96365667
56
2.7
54
75
15
139
61
1
6
29
1.32
96365713--96365745
11
3.1
11
86
4
50
33
3
0
63
1.10
96365968--96366132
84
2.0
84
81
4
199
35
6
16
41
1.73
96367654--96367688
17
2.0
18
88
5
54
17
14
5
62
1.49
96371483--96371543
30
2.0
30
100
0
122
27
22
9
39
1.86
96375542--96375627
40
2.2
39
85
2
109
25
17
27
29
1.97
96375814--96375855
20
2.1
20
100
0
84
47
14
9
28
1.75
96378197--96378227
15
2.1
15
93
0
53
29
12
22
35
1.91
96390224--96390490
48
5.6
47
80
13
182
28
17
29
24
1.97
96390224--96390400
94
1.9
94
87
4
259
27
18
30
23
1.97
96395925--96396119
47
4.1
47
83
5
237
32
9
30
28
1.88
96395925--96396119
98
2.0
94
85
3
255
32
9
30
28
1.88
96396093--96396183
46
2.0
46
88
0
137
32
7
31
27
1.85
96396370--96396477
37
2.9
37
90
1
180
22
16
30
30
1.96
96397752--96397985
40
5.8
40
89
2
360
23
21
29
25
1.99
96397743--96397987
82
3.0
82
93
1
413
23
21
28
26
1.99
96398149--96398199
25
2.0
25
81
7
59
33
13
31
21
1.92
96401805--96401999
47
4.1
47
84
5
246
32
9
30
27
1.89
96401805--96401999
98
2.0
94
86
3
264
32
9
30
27
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96401973--96402109
46
3.0
46
91
0
211
34
8
31
26
1.85
96402296--96402403
37
2.9
37
90
1
180
22
16
30
30
1.96
96404495--96404519
11
2.3
11
100
0
50
48
0
16
36
1.46
96405571--96405724
6
25.7
6
100
0
308
33
0
16
50
1.46
96405840--96406105
48
5.6
48
76
3
241
31
19
24
24
1.98
96421470--96421766
72
4.1
72
73
4
210
34
6
13
45
1.70
96421923--96421947
13
1.9
13
100
0
50
40
16
0
44
1.47
96421956--96422024
35
2.0
35
82
5
86
37
2
2
56
1.29
96424788--96424875
35
2.7
33
78
11
94
48
1
4
45
1.30
96425410--96425441
5
6.4
5
100
0
64
0
0
37
62
0.95
96425648--96425694
24
2.0
24
84
16
62
34
0
14
51
1.43
96425864--96425983
40
3.1
39
75
8
127
30
16
20
32
1.95
96427778--96427829
21
2.5
21
100
0
104
38
17
11
32
1.85
96429942--96429983
5
8.4
5
100
0
84
40
0
0
59
0.97
96430038--96430093
19
3.0
19
92
7
89
69
0
28
1
0.98
96431753--96431886
54
2.5
54
93
0
223
32
23
16
27
1.96
96435892--96436142
43
5.9
43
78
6
251
25
18
27
28
1.98
96438160--96438202
5
8.6
5
97
0
77
16
0
2
81
0.79
96439434--96439478
23
1.9
24
86
4
65
26
51
2
20
1.59
96449261--96449308
23
2.1
23
96
0
87
29
12
18
39
1.88
96450451--96450646
81
2.4
82
88
2
304
52
16
5
26
1.64
96450729--96451156
158
2.7
158
83
5
499
34
14
16
35
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96456100--96456139
20
2.0
20
90
0
62
22
2
0
75
0.93
96456223--96456285
30
2.1
30
90
0
99
26
3
12
57
1.51
96456409--96456441
11
2.8
12
86
9
50
63
0
0
36
0.95
96457015--96457085
34
2.1
34
94
0
124
40
4
26
28
1.74
96457118--96457162
14
3.1
14
78
15
56
31
0
0
68
0.89
96457561--96457591
16
1.9
16
93
0
53
67
0
0
32
0.91
96460653--96460742
41
2.2
41
97
2
171
45
15
12
26
1.81
96465023--96465109
5
16.0
5
72
22
52
54
3
1
41
1.25
96471805--96471843
20
1.9
21
89
5
62
35
0
5
58
1.20
96473002--96473032
16
1.9
16
100
0
62
38
6
16
38
1.74
96483598--96483669
28
2.7
26
78
17
85
27
9
5
56
1.53
96483607--96483676
28
2.5
28
86
2
97
27
7
4
61
1.41
96483635--96483757
51
2.4
49
77
9
133
29
6
5
58
1.46
96483730--96483797
24
2.7
25
75
13
68
32
8
2
55
1.45
96486632--96486848
46
4.7
46
94
1
346
41
14
24
18
1.88
96486944--96487000
26
2.2
27
81
12
75
38
3
21
36
1.70
96486968--96487042
26
2.9
24
74
14
69
42
5
18
33
1.73
96501247--96501364
39
3.0
39
97
0
218
20
25
32
22
1.98
96503450--96503541
47
2.0
46
89
2
139
33
15
23
27
1.95
96503949--96504240
44
6.5
44
83
5
275
29
19
22
28
1.98
96503948--96504193
89
2.8
89
81
7
268
28
18
23
29
1.98
96503949--96504189
134
1.8
133
85
4
342
27
19
23
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96504085--96504235
45
3.4
44
78
6
126
31
19
21
27
1.97
96506067--96506144
28
2.9
25
81
7
75
28
8
3
58
1.46
96506082--96506144
28
2.3
26
89
5
90
30
7
1
60
1.35
96506104--96506225
51
2.5
48
77
11
140
28
6
4
59
1.43
96512789--96512844
27
2.1
27
93
0
94
26
16
39
17
1.91
96512829--96512894
27
2.4
27
87
0
96
24
25
27
22
2.00
96513601--96513644
21
2.2
20
84
12
54
72
2
0
25
0.96
96515146--96515202
20
2.7
22
75
17
59
43
0
0
56
0.99
96515146--96515197
23
2.5
20
81
9
59
46
0
0
53
1.00
96516706--96516754
21
2.3
21
78
0
53
28
26
24
20
1.99
96520177--96520213
12
3.0
13
80
11
51
35
0
8
56
1.29
96523397--96523542
51
2.9
49
81
4
175
26
26
20
26
1.99
96524350--96524410
30
2.0
30
87
0
86
31
22
6
39
1.80
96526258--96526414
56
2.8
56
83
3
192
28
33
18
19
1.96
96528291--96528352
16
3.7
16
69
12
52
46
24
9
19
1.79
96530252--96530302
24
2.1
25
85
3
68
52
7
3
35
1.49
96530698--96530773
37
2.1
36
83
11
93
42
2
2
52
1.29
96541686--96541774
46
1.9
46
93
0
151
37
19
8
34
1.83
96541686--96541759
23
3.2
23
65
14
62
40
16
8
35
1.78
96551127--96551216
40
2.3
39
81
11
94
41
21
7
30
1.81
96551129--96551216
20
4.4
20
73
13
74
42
20
6
30
1.78
96551478--96551567
26
3.7
25
77
14
89
25
18
24
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96551360--96551747
23
16.5
24
67
11
171
32
19
20
27
1.97
96551346--96551674
165
2.0
165
95
0
595
31
18
21
28
1.97
96551503--96551754
47
5.3
47
78
8
219
32
19
21
25
1.97
96551360--96551722
165
2.2
165
89
4
540
32
19
20
27
1.97
96551681--96551782
24
4.2
24
76
9
91
33
18
22
25
1.97
96551539--96551757
47
4.7
47
81
5
230
34
19
21
24
1.96
96553030--96553067
20
1.9
20
84
10
51
23
5
23
47
1.72
96556186--96556223
20
1.9
20
94
0
67
57
23
2
15
1.51
96561431--96561576
20
7.4
20
67
10
68
13
30
21
34
1.92
96561419--96561588
39
4.4
39
85
0
232
12
28
21
37
1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345